Csor.00g135840 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g135840
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionFormin-like protein
LocationCsor_Chr05: 7179270 .. 7180140 (-)
RNA-Seq ExpressionCsor.00g135840
SyntenyCsor.00g135840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTGGGCCACAGGAGCGTTTGGCTGCAGGCCAGATTTTGGGCTGCGGGGTTCTCATGCTAGAACGATCTCTAGTTGCTGGGCCGTTGGATTTTGGGCCGCGGGCTTCCGTGCTGGACCTCGGGTTCGAATCGGGTCCTTGCATGATTTTCTGATGAATTTTCTCTCTTCTACCCGCAACGTTTCCGATGTCTTTTAAAATCATTTTTCTTTCCTTTCCTCTCTGTTTGCTTCTCCTCCTCTCCCATGAAGTTTCGTGGTTGTTTGACGTCGGGGGAGGCAGATCTTGTTTCTCAAAAATCTAATTTCGAACTTCTTCTCCAATGGTGACTACGGCGACCACCACGGCGTAGGTTAGTGAGATTTTTCCTGGTTGGTTTACTCGGTATTATGGTCAGAAGGGAGGTTTTCGACGTCGTTTGAAAAGATCTTGGTTCCTCTCTTTCTCTTCTGTTTCTTTGTTGAAGTGTTTCTTGGGAGCTTGGGGGGGCGTTGGCTGAGATCGTCTGGCTGAAGGTTGGCGTTTGGAGAGGGACGTGGAGCATGGTTCCTTGTGAAAAGGAGATGTAGATCATCCTGTGGTGTGGGACAAGATTCATGGCGATTCTTTCATGTAAAACCCATCATAATTCAATTTGAAAGAGATTTCATTTTGATTTTGCTCTTCTTCTTTGATCTTATCTCAGTTCTTCAACTTTAATGGCAACCTTATACAAGCTCTGTTTGGGTATGTAGCCACAAACAAGAAATCGCCATTAGAGCAGAGTGGCCTCAACAATGGCAGACGAGCACTGATCTCAATTCTTGATTACCGAAGGACAAGAAACAATTCAATAACGAAGGACAAGAAACAATTCAATAATCCTTGA

mRNA sequence

ATGAGCTGGGCCACAGGAGCGTTTGGCTGCAGGCCAGATTTTGGGCTGCGGGGTTCTCATGCTAGAACGATCTCTAGTTGCTGGGCCGTTGGATTTTGGGCCGCGGGCTTCCGTGCTGGACCTCGGTTCTTCAACTTTAATGGCAACCTTATACAAGCTCTGTTTGGGTATGTAGCCACAAACAAGAAATCGCCATTAGAGCAGAGTGGCCTCAACAATGGCAGACGAGCACTGATCTCAATTCTTGATTACCGAAGGACAAGAAACAATTCAATAACGAAGGACAAGAAACAATTCAATAATCCTTGA

Coding sequence (CDS)

ATGAGCTGGGCCACAGGAGCGTTTGGCTGCAGGCCAGATTTTGGGCTGCGGGGTTCTCATGCTAGAACGATCTCTAGTTGCTGGGCCGTTGGATTTTGGGCCGCGGGCTTCCGTGCTGGACCTCGGTTCTTCAACTTTAATGGCAACCTTATACAAGCTCTGTTTGGGTATGTAGCCACAAACAAGAAATCGCCATTAGAGCAGAGTGGCCTCAACAATGGCAGACGAGCACTGATCTCAATTCTTGATTACCGAAGGACAAGAAACAATTCAATAACGAAGGACAAGAAACAATTCAATAATCCTTGA

Protein sequence

MSWATGAFGCRPDFGLRGSHARTISSCWAVGFWAAGFRAGPRFFNFNGNLIQALFGYVATNKKSPLEQSGLNNGRRALISILDYRRTRNNSITKDKKQFNNP
Homology
BLAST of Csor.00g135840 vs. ExPASy Swiss-Prot
Match: O04532 (Formin-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=FH8 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.1e-05
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 44  FNFNGNLIQALFGYVATNKKSPLEQSGLNNGRRALISILDYRRTRNNSI 93
           F+F+G+L++ALFGYVA  KKSP EQ    N +   I ILD R+++N +I
Sbjct: 332 FSFDGDLMEALFGYVAVGKKSP-EQGDEKNPKSTQIFILDPRKSQNTAI 379

BLAST of Csor.00g135840 vs. NCBI nr
Match: KAG6599024.1 (Formin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 214 bits (545), Expect = 3.76e-70
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 1   MSWATGAFGCRPDFGLRGSHARTISSCWAVGFWAAGFRAGPRFFNFNGNLIQALFGYVAT 60
           MSWATGAFGCRPDFGLRGSHARTISSCWAVGFWAAGFRAGPRFFNFNGNLIQALFGYVAT
Sbjct: 1   MSWATGAFGCRPDFGLRGSHARTISSCWAVGFWAAGFRAGPRFFNFNGNLIQALFGYVAT 60

Query: 61  NKKSPLEQSGLNNGRRALISILDYRRTRNNSITKDKKQFNNP 102
           NKKSPLEQSGLNNGRRALISILDYRRTRNNSITKDKKQFNNP
Sbjct: 61  NKKSPLEQSGLNNGRRALISILDYRRTRNNSITKDKKQFNNP 102

BLAST of Csor.00g135840 vs. NCBI nr
Match: XP_022999645.1 (formin-like protein 8 [Cucurbita maxima])

HSP 1 Score: 80.5 bits (197), Expect = 4.90e-15
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 45  NFNGNLIQALFGYVATNKKSPLEQSGLNNGRRALISILDYRRTRNNSI 92
           +FNGNL++ALFGYVATNKKSP+EQSGLNNGRR LISILD RR RN +I
Sbjct: 261 SFNGNLMEALFGYVATNKKSPIEQSGLNNGRRVLISILDSRRARNIAI 308

BLAST of Csor.00g135840 vs. NCBI nr
Match: XP_023546030.1 (formin-like protein 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.7 bits (182), Expect = 5.22e-13
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0

Query: 44  FNFNGNLIQALFGYVATNKKSPLEQSGLNNGRRALISILDYRRTRN 89
           F+FNGNL++ALFGYVATNKKS +EQSGLNNG RA ISILD RR RN
Sbjct: 257 FSFNGNLMEALFGYVATNKKSSIEQSGLNNGGRAPISILDSRRARN 302

BLAST of Csor.00g135840 vs. NCBI nr
Match: KAG6599025.1 (Formin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.0 bits (175), Expect = 4.61e-12
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 44  FNFNGNLIQALFGYVATNKKSPLEQSGLNNGRRALISILDYRRTRN 89
           F+FNGNL++ALFGYVAT KKSP+EQSGL+NG R  ISILD RR RN
Sbjct: 245 FSFNGNLMEALFGYVATTKKSPIEQSGLSNGGRGPISILDSRRARN 290

BLAST of Csor.00g135840 vs. NCBI nr
Match: XP_022946590.1 (formin-like protein 8 [Cucurbita moschata])

HSP 1 Score: 72.0 bits (175), Expect = 4.61e-12
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 44  FNFNGNLIQALFGYVATNKKSPLEQSGLNNGRRALISILDYRRTRN 89
           F+FNGNL++ALFGYVAT KKSP+EQSGL+NG R  ISILD RR RN
Sbjct: 245 FSFNGNLMEALFGYVATTKKSPIEQSGLSNGGRGPISILDSRRARN 290

BLAST of Csor.00g135840 vs. ExPASy TrEMBL
Match: A0A6J1KG27 (Formin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493942 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.37e-15
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 45  NFNGNLIQALFGYVATNKKSPLEQSGLNNGRRALISILDYRRTRNNSI 92
           +FNGNL++ALFGYVATNKKSP+EQSGLNNGRR LISILD RR RN +I
Sbjct: 261 SFNGNLMEALFGYVATNKKSPIEQSGLNNGRRVLISILDSRRARNIAI 308

BLAST of Csor.00g135840 vs. ExPASy TrEMBL
Match: A0A6J1G4B5 (Formin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111450608 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.23e-12
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 44  FNFNGNLIQALFGYVATNKKSPLEQSGLNNGRRALISILDYRRTRN 89
           F+FNGNL++ALFGYVAT KKSP+EQSGL+NG R  ISILD RR RN
Sbjct: 245 FSFNGNLMEALFGYVATTKKSPIEQSGLSNGGRGPISILDSRRARN 290

BLAST of Csor.00g135840 vs. ExPASy TrEMBL
Match: A0A6J1KCS2 (Formin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493742 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.24e-12
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 44  FNFNGNLIQALFGYVATNKKSPLEQSGLNNGRRALISILDYRRTRNNSI 92
           F+FNGN ++ LFG+VATNKK P+EQSGLNNGRR LISILD +R RN +I
Sbjct: 279 FSFNGNRMEDLFGFVATNKKLPIEQSGLNNGRRPLISILDSQRARNIAI 327

BLAST of Csor.00g135840 vs. ExPASy TrEMBL
Match: A0A5D3BLW1 (Formin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00800 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.14e-09
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 44  FNFNGNLIQALFGYVATNKKSP---------LEQSGLNNGRRALISILDYRRTRNNSI 92
           F FNG+L++ALFGYVATNKKSP          E SG NNGRR  ISILD RR+RN +I
Sbjct: 306 FRFNGDLMEALFGYVATNKKSPPKQSGNHEQTESSGPNNGRREQISILDSRRSRNIAI 363

BLAST of Csor.00g135840 vs. ExPASy TrEMBL
Match: A0A5A7T4H1 (Formin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00200 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.14e-09
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 44  FNFNGNLIQALFGYVATNKKSP---------LEQSGLNNGRRALISILDYRRTRNNSI 92
           F FNG+L++ALFGYVATNKKSP          E SG NNGRR  ISILD RR+RN +I
Sbjct: 306 FRFNGDLMEALFGYVATNKKSPPKQSGNHEQTESSGPNNGRREQISILDSRRSRNIAI 363

BLAST of Csor.00g135840 vs. TAIR 10
Match: AT1G70140.1 (formin 8 )

HSP 1 Score: 48.5 bits (114), Expect = 3.7e-06
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 44  FNFNGNLIQALFGYVATNKKSPLEQSGLNNGRRALISILDYRRTRNNSI 93
           F+F+G+L++ALFGYVA  KKSP EQ    N +   I ILD R+++N +I
Sbjct: 332 FSFDGDLMEALFGYVAVGKKSP-EQGDEKNPKSTQIFILDPRKSQNTAI 379

BLAST of Csor.00g135840 vs. TAIR 10
Match: AT1G24150.1 (formin homologue 4 )

HSP 1 Score: 42.4 bits (98), Expect = 2.6e-04
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 0

Query: 44  FNFNGNLIQALFGYVATNKKSPLE--QSGLNNGRRALISILDYRRTRNNSI 93
           F+F+G+L++ALFGYVA  KKSP +      ++   A I ILD R+++N +I
Sbjct: 339 FSFDGDLMEALFGYVAVGKKSPDDGGDKKPSSASPAQIFILDPRKSQNTAI 389

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O045325.1e-0551.02Formin-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=FH8 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
KAG6599024.13.76e-70100.00Formin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022999645.14.90e-1581.25formin-like protein 8 [Cucurbita maxima][more]
XP_023546030.15.22e-1380.43formin-like protein 8 [Cucurbita pepo subsp. pepo][more]
KAG6599025.14.61e-1276.09Formin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022946590.14.61e-1276.09formin-like protein 8 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A0A6J1KG272.37e-1581.25Formin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493942 PE=3 SV=1[more]
A0A6J1G4B52.23e-1276.09Formin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111450608 PE=3 SV=1[more]
A0A6J1KCS22.24e-1271.43Formin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493742 PE=3 SV=1[more]
A0A5D3BLW11.14e-0962.07Formin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G... [more]
A0A5A7T4H11.14e-0962.07Formin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G... [more]
Match NameE-valueIdentityDescription
AT1G70140.13.7e-0651.02formin 8 [more]
AT1G24150.12.6e-0445.10formin homologue 4 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g135840.m01Csor.00g135840.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane