Csor.00g134880 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g134880
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	auxin-regulated gene involved in organ size
Location	Csor_Chr03: 1978329 .. 1978562 (-)
RNA-Seq Expression	Csor.00g134880
Synteny	Csor.00g134880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGGGCATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTGGCAGCGTCTCTTTTGATATTGCCTCTTGTGCTGCCACCGTTGCCGCCGCCGCCGGTGCTGCTGCTGTTTGTTCCGGTGCTGATTATGTTCTTTCTTCTGTTCTTGGCGCTGTCGCCGTCAGAGGTACCGGCGGAAGAGCACCGTGTCGGCGCCGACGGCGGCGGCGGTCACGATTCTGCTTGA

mRNA sequence

ATGGTGAGGGCATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTGGCAGCGTCTCTTTTGATATTGCCTCTTGTGCTGCCACCGTTGCCGCCGCCGCCGGTGCTGCTGCTGTTTGTTCCGGTGCTGATTATGTTCTTTCTTCTGTTCTTGGCGCTGTCGCCGTCAGAGGTACCGGCGGAAGAGCACCGTGTCGGCGCCGACGGCGGCGGCGGTCACGATTCTGCTTGA

Coding sequence (CDS)

ATGGTGAGGGCATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTGGCAGCGTCTCTTTTGATATTGCCTCTTGTGCTGCCACCGTTGCCGCCGCCGCCGGTGCTGCTGCTGTTTGTTCCGGTGCTGATTATGTTCTTTCTTCTGTTCTTGGCGCTGTCGCCGTCAGAGGTACCGGCGGAAGAGCACCGTGTCGGCGCCGACGGCGGCGGCGGTCACGATTCTGCTTGA

Protein sequence

MVRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEHRVGADGGGGHDSA

Homology

[Close]

BLAST of Csor.00g134880 vs. ExPASy Swiss-Prot
Match: Q7X6L2 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica OX=39947 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.4e-08
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 5   FFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEH 64
           +FS+ S+ +L+ V ASL+ILPLVLPPLPPPP +L+ VPV ++  LL LA  P+   +   
Sbjct: 99  YFSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALAFMPT-TTSSSS 158

Query: 65  RVGADGGGGHDSA 78
             G  GGGG + A
Sbjct: 159 SAGGGGGGGRNGA 170

[Close]

BLAST of Csor.00g134880 vs. ExPASy Swiss-Prot
Match: C7SFP6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis OX=51351 GN=ARGOS PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 5.4e-07
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 5   FFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPS 58
           +FSL S+ +L+ + ASLLILPLVLPPLPPPP +LL VP+ IM  L+ LA  PS
Sbjct: 71  YFSLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPS 123

[Close]

BLAST of Csor.00g134880 vs. ExPASy Swiss-Prot
Match: Q6NMD6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3702 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 5   FFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPS 58
           +FSL S+ +L+ + ASLLILPLVLPPLPPPP +LL VP+ IM  L+ LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of Csor.00g134880 vs. ExPASy Swiss-Prot
Match: Q8RXL7 (ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 4   AFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPS 58
           ++FSL S+ +L+ + ASLLILPL+LPPLPPPP +LL +P+ IM  L+ LA  PS
Sbjct: 69  SYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of Csor.00g134880 vs. ExPASy Swiss-Prot
Match: Q8RWS1 (Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.5e-06
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 4  AFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPA 62
          +  + RSVA+L+ ++  LLILP  LPPLPPPP  LL +P+L+M  L+FLA SPS  P+
Sbjct: 23 SLITARSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of Csor.00g134880 vs. NCBI nr
Match: KAG6603314.1 (hypothetical protein SDJN03_03923, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135 bits (339), Expect = 1.69e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MVRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVP 60
          MVRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVP
Sbjct: 1  MVRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVP 60

Query: 61 AEEHRVGADGGGGHDSA 77
          AEEHRVGADGGGGHDSA
Sbjct: 61 AEEHRVGADGGGGHDSA 77

[Close]

BLAST of Csor.00g134880 vs. NCBI nr
Match: KAA0025988.1 (hypothetical protein E6C27_scaffold34G003090 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 3.96e-20
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 13 MLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEHRVGADGGG 72
          MLIV+A SLLILPLVLPPLPPPPVLLLFVPVLIM  LLFLALSPSE PAE HR G D  G
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHR-GTDSDG 60

Query: 73 GHDSA 77
          G++SA
Sbjct: 61 GYNSA 64

[Close]

BLAST of Csor.00g134880 vs. NCBI nr
Match: TYK04223.1 (hypothetical protein E5676_scaffold24967G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 3.25e-19
Identity = 53/65 (81.54%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 13 MLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEHRVGADGGG 72
          MLIV+A SLLILPLVLPPLPPPPVLLLFVPVLIM  LLFLALSPSE PAE HR G D  G
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHR-GTDCDG 60

Query: 73 GHDSA 77
          G +SA
Sbjct: 61 GFNSA 64

[Close]

BLAST of Csor.00g134880 vs. NCBI nr
Match: KAG2683596.1 (hypothetical protein I3760_10G039000 [Carya illinoinensis] >KAG6690947.1 hypothetical protein I3842_10G039100 [Carya illinoinensis] >KAG7958838.1 hypothetical protein I3843_10G039300 [Carya illinoinensis])

HSP 1 Score: 65.5 bits (158), Expect = 4.93e-12
Identity = 37/56 (66.07%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 5  FFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVP 60
          +FS RS+ ++IV+A SL+++PL+LPPLPPPP+LLLFVPVLIM  L+ LALS S VP
Sbjct: 4  YFSARSIVVMIVLAVSLVVVPLLLPPLPPPPLLLLFVPVLIMSLLVVLALSSSHVP 59

[Close]

BLAST of Csor.00g134880 vs. NCBI nr
Match: KAG5242541.1 (hypothetical protein IMY05_006G0027000 [Salix suchowensis])

HSP 1 Score: 65.1 bits (157), Expect = 7.17e-12
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MVRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSE 58
          MVR F SLRS+  ++V+  SLL+LPLVLPPL PPP+  LF+PVLIM  LLFLALSPS+
Sbjct: 1  MVREF-SLRSIVTMVVLTVSLLVLPLVLPPLSPPPLFFLFIPVLIMILLLFLALSPSQ 57

[Close]

BLAST of Csor.00g134880 vs. ExPASy TrEMBL
Match: A0A0A0L0Y7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432970 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 3.64e-27
Identity = 65/77 (84.42%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1  MVRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVP 60
          MVR FFSLRSVAMLIVVA SLLILPLVLPPLPPPPVLLLFVPVLIM  LLFLALSPSEVP
Sbjct: 1  MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEVP 60

Query: 61 AEEHRVGADGGGGHDSA 77
          AEEH    DGG   +SA
Sbjct: 61 AEEHHE-TDGGDEDNSA 76

[Close]

BLAST of Csor.00g134880 vs. ExPASy TrEMBL
Match: A0A5A7SII5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003090 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.92e-20
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 13 MLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEHRVGADGGG 72
          MLIV+A SLLILPLVLPPLPPPPVLLLFVPVLIM  LLFLALSPSE PAE HR G D  G
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHR-GTDSDG 60

Query: 73 GHDSA 77
          G++SA
Sbjct: 61 GYNSA 64

[Close]

BLAST of Csor.00g134880 vs. ExPASy TrEMBL
Match: A0A5D3BWW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00300 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.58e-19
Identity = 53/65 (81.54%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 13 MLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEHRVGADGGG 72
          MLIV+A SLLILPLVLPPLPPPPVLLLFVPVLIM  LLFLALSPSE PAE HR G D  G
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHR-GTDCDG 60

Query: 73 GHDSA 77
          G +SA
Sbjct: 61 GFNSA 64

[Close]

BLAST of Csor.00g134880 vs. ExPASy TrEMBL
Match: A0A5B7AL58 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.23e-12
Identity = 36/60 (60.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1   MVRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVP 60
           M+  FFSLR+V +++V+  SLL+LP+VLPPLPPPP++LLF+P+LIM  L+ LA SPS++P
Sbjct: 89  MLVRFFSLRAVVIMVVLTVSLLVLPVVLPPLPPPPLMLLFIPILIMAVLILLAFSPSQLP 148

[Close]

BLAST of Csor.00g134880 vs. ExPASy TrEMBL
Match: A0A2N9F7M5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10977 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.39e-12
Identity = 34/55 (61.82%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 6  FSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVP 60
          +++R + +++++  SLL+LPLVLPPLPPPP+LLLFVPVL+M  L+FLAL+PS+VP
Sbjct: 5  YTVRFITVMLLLTVSLLVLPLVLPPLPPPPLLLLFVPVLMMSLLVFLALTPSQVP 59

[Close]

BLAST of Csor.00g134880 vs. TAIR 10
Match: AT2G44080.1 (ARGOS-like )

HSP 1 Score: 53.5 bits (127), Expect = 8.6e-08
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 4   AFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPS 58
           ++FSL S+ +L+ + ASLLILPL+LPPLPPPP +LL +P+ IM  L+ LA  PS
Sbjct: 69  SYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of Csor.00g134880 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 53.5 bits (127), Expect = 8.6e-08
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 5   FFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPS 58
           +FSL S+ +L+ + ASLLILPLVLPPLPPPP +LL VP+ IM  L+ LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of Csor.00g134880 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 2.5e-07
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 4  AFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPA 62
          +  + RSVA+L+ ++  LLILP  LPPLPPPP  LL +P+L+M  L+FLA SPS  P+
Sbjct: 23 SLITARSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

The following BLAST results are available for this feature:

BLAST of Csor.00g134880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7X6L2	8.4e-08	49.32	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon...	[more]
C7SFP6	5.4e-07	62.26	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
Q6NMD6	1.2e-06	62.26	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3...	[more]
Q8RXL7	1.2e-06	57.41	ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1	[more]
Q8RWS1	3.5e-06	53.45	Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1	[more]

BLAST of Csor.00g134880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603314.1	1.69e-39	100.00	hypothetical protein SDJN03_03923, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0025988.1	3.96e-20	81.54	hypothetical protein E6C27_scaffold34G003090 [Cucumis melo var. makuwa]	[more]
TYK04223.1	3.25e-19	81.54	hypothetical protein E5676_scaffold24967G00300 [Cucumis melo var. makuwa]	[more]
KAG2683596.1	4.93e-12	66.07	hypothetical protein I3760_10G039000 [Carya illinoinensis] >KAG6690947.1 hypothe...	[more]
KAG5242541.1	7.17e-12	67.24	hypothetical protein IMY05_006G0027000 [Salix suchowensis]	[more]

BLAST of Csor.00g134880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Y7	3.64e-27	84.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432970 PE=4 SV=1	[more]
A0A5A7SII5	1.92e-20	81.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BWW3	1.58e-19	81.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5B7AL58	1.23e-12	60.00	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276...	[more]
A0A2N9F7M5	3.39e-12	61.82	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10977 PE=4 SV=1	[more]

BLAST of Csor.00g134880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44080.1	8.6e-08	57.41	ARGOS-like	[more]
AT3G59900.1	8.6e-08	62.26	auxin-regulated gene involved in organ size	[more]
AT2G41230.1	2.5e-07	53.45	unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38928	ARGOS7	coord: 1..64
None	No IPR available	PANTHER	PTHR38928:SF8	ARGOS7	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g134880.m01	Csor.00g134880.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046622	positive regulation of organ growth
biological_process	GO:0009725	response to hormone
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus