Csor.00g134350 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g134350
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr14: 12845806 .. 12847220 (+)
RNA-Seq ExpressionCsor.00g134350
SyntenyCsor.00g134350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCGACGGCGGCAGCAACCGTAGCTTGGAAGATCGGCGTTCCGGCTCCGGTCAAATCTGAAAAGAAGCCGCCGACGAACTTCACGAGGCTCACAGTTCGCTATCCAAATTGCTTTCTCAATACACGGCCGAAAGTTCCTGCCATTCGAGCACTTGGACAAGAAGGGAATTCGAGCGGCGGCGACGACGACACCGGTATCAGTCAGGTGTGTGTTTCTTTCTAATTGTGTCTTCAAGTTCATACGCTTTGCATATTTCTGTTACCACCTGATAATTCTAGGGCTAATTAGCTGAATAATCTAGGCTGAATGCGGGAGAAATCGATAGAATTCTATAATTGACCACTTTTACTGTATTTGACGAGGAAATCTGGAATTGAGTAAACCAGCTGCATCAGGTTCTTGTTAGGTTGAGTAAGCATTCCTCTCGATAATCAAACCTGGAAAAAGAATGGATTTCATGTTCACGATGATTTATTGTAACGGTACAAGCCCACTGCTAGCAGATACTATTCTCGATGTTTCGTTCTCCTCCCCCACCGATGTGAGATCATTTATTGTAACGGTACAAGCCCACTGCTAACAGATACTGTCCTCGATGTTTCACTCTCCTCCCCAGCCAACGTGGGATCTCACAATCCACCCCCTTTCAAGTCCCAGCGTCCTCGTTGGCACTCATTCTCTTCTCCAATCGATGTGAGACCCCCAAATCTACTCCCTTCAAGATCCAGTGTCATTGCTTGCACATCGCCTCATGTCCACTGTCTTCGAGGCTCAGTCTCCTCGCTAACACATCGCCTTGTGTTCACCCCCTTTTGAGGCTTAACCCCCTCACCGGCACATCACCCCGTGTCTGGCTCTAATATCATTTGTAATGGTCCAAGCCCACCGCTAACAAATATTGTCCTACTTTGGCTTTTCCTTTCGGACCTACCCTCAAAGGTTTTTAAAACATCTGTTAGGGAGATGTTTCCACACCCTTTATAAAGGGTGTTTCGTTCTCCTTCCCAACCGATGTGAGATCTCACATTTCTCCAATGCATTCTCAACTCTGATATGTATCCAATTCATTTTTAGACAATTTCCTTTCAAGATCATCATCATCATAGTTCAGTAAATTCGGAATGATTATAATCAATAATTATGGGGTAAGATCTAAAAGAGGATGATATGAGGATATATAGCAACAATTACTTCACTTACTGTGTACTATGATGCAGGAGGATGTGCAGTTTGTGTTGAAAATGGCAGCAGGTTCCATAGCAGTGGGCGGTGGAATAAAGTATGGAAGCACAATCTTTCCGGAGATGACTAAACCCAATATTGTACAAGCTCTTATTATGGTATCAACTCCTGTGGTTGTAGCCATATGGCTTTTGATCAACCAAAGTCGTCAAGACAGACAAAGCTAA

mRNA sequence

ATGGCAGCGACGGCGGCAGCAACCGTAGCTTGGAAGATCGGCGTTCCGGCTCCGGTCAAATCTGAAAAGAAGCCGCCGACGAACTTCACGAGGCTCACAGTTCGCTATCCAAATTGCTTTCTCAATACACGGCCGAAAGTTCCTGCCATTCGAGCACTTGGACAAGAAGGGAATTCGAGCGGCGGCGACGACGACACCGGTATCAGTCAGGAGGATGTGCAGTTTGTGTTGAAAATGGCAGCAGGTTCCATAGCAGTGGGCGGTGGAATAAAGTATGGAAGCACAATCTTTCCGGAGATGACTAAACCCAATATTGTACAAGCTCTTATTATGGTATCAACTCCTGTGGTTGTAGCCATATGGCTTTTGATCAACCAAAGTCGTCAAGACAGACAAAGCTAA

Coding sequence (CDS)

ATGGCAGCGACGGCGGCAGCAACCGTAGCTTGGAAGATCGGCGTTCCGGCTCCGGTCAAATCTGAAAAGAAGCCGCCGACGAACTTCACGAGGCTCACAGTTCGCTATCCAAATTGCTTTCTCAATACACGGCCGAAAGTTCCTGCCATTCGAGCACTTGGACAAGAAGGGAATTCGAGCGGCGGCGACGACGACACCGGTATCAGTCAGGAGGATGTGCAGTTTGTGTTGAAAATGGCAGCAGGTTCCATAGCAGTGGGCGGTGGAATAAAGTATGGAAGCACAATCTTTCCGGAGATGACTAAACCCAATATTGTACAAGCTCTTATTATGGTATCAACTCCTGTGGTTGTAGCCATATGGCTTTTGATCAACCAAAGTCGTCAAGACAGACAAAGCTAA

Protein sequence

MAATAAATVAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSSGGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGSTIFPEMTKPNIVQALIMVSTPVVVAIWLLINQSRQDRQS
Homology
BLAST of Csor.00g134350 vs. NCBI nr
Match: KAG6581960.1 (hypothetical protein SDJN03_21962, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260 bits (664), Expect = 2.63e-87
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query: 1   MAATAAATVAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS 60
           MAATAAATVAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS
Sbjct: 1   MAATAAATVAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS 60

Query: 61  GGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGSTIFPEMTKPNIVQALIMVSTPVVVAI 120
           GGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGSTIFPEMTKPNIVQALIMVSTPVVVAI
Sbjct: 61  GGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGSTIFPEMTKPNIVQALIMVSTPVVVAI 120

Query: 121 WLLINQSRQDRQS 133
           WLLINQSRQDRQS
Sbjct: 121 WLLINQSRQDRQS 133

BLAST of Csor.00g134350 vs. NCBI nr
Match: XP_022955512.1 (uncharacterized protein LOC111457518 isoform X1 [Cucurbita moschata] >KAG7018380.1 hypothetical protein SDJN02_20248 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255 bits (651), Expect = 2.52e-85
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 0

Query: 1   MAATAAATVAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS 60
           MAATAAAT AWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS
Sbjct: 1   MAATAAATGAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS 60

Query: 61  GGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGSTIFPEMTKPNIVQALIMVSTPVVVAI 120
           GGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGS IFPEMTKPNIVQALIMVSTPVVVAI
Sbjct: 61  GGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGSIIFPEMTKPNIVQALIMVSTPVVVAI 120

Query: 121 WLLINQSRQDRQS 133
           WLLINQSRQDRQS
Sbjct: 121 WLLINQSRQDRQS 133

BLAST of Csor.00g134350 vs. NCBI nr
Match: XP_022955513.1 (uncharacterized protein LOC111457518 isoform X2 [Cucurbita moschata])

HSP 1 Score: 248 bits (634), Expect = 9.56e-83
Identity = 130/133 (97.74%), Postives = 130/133 (97.74%), Query Frame = 0

Query: 1   MAATAAATVAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS 60
           MAATAAAT AWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS
Sbjct: 1   MAATAAATGAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS 60

Query: 61  GGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGSTIFPEMTKPNIVQALIMVSTPVVVAI 120
           GGDDDTGISQ DVQFVLKMAAGSIAVGGGIKYGS IFPEMTKPNIVQALIMVSTPVVVAI
Sbjct: 61  GGDDDTGISQ-DVQFVLKMAAGSIAVGGGIKYGSIIFPEMTKPNIVQALIMVSTPVVVAI 120

Query: 121 WLLINQSRQDRQS 133
           WLLINQSRQDRQS
Sbjct: 121 WLLINQSRQDRQS 132

BLAST of Csor.00g134350 vs. NCBI nr
Match: XP_023528959.1 (uncharacterized protein LOC111791721 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243 bits (620), Expect = 1.35e-80
Identity = 127/133 (95.49%), Postives = 128/133 (96.24%), Query Frame = 0

Query: 1   MAATAAATVAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS 60
           MAATAAAT A KIGV +PVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS
Sbjct: 1   MAATAAATGALKIGVLSPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS 60

Query: 61  GGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGSTIFPEMTKPNIVQALIMVSTPVVVAI 120
           GGDDDTGIS EDVQFVLKMAAGSIAVGGGIKYGS IFPEMTKPNIVQALIMVSTPVVVAI
Sbjct: 61  GGDDDTGISHEDVQFVLKMAAGSIAVGGGIKYGSIIFPEMTKPNIVQALIMVSTPVVVAI 120

Query: 121 WLLINQSRQDRQS 133
           WLLINQSRQDRQS
Sbjct: 121 WLLINQSRQDRQS 133

BLAST of Csor.00g134350 vs. NCBI nr
Match: XP_022980152.1 (uncharacterized protein LOC111479627 isoform X1 [Cucurbita maxima])

HSP 1 Score: 237 bits (604), Expect = 1.24e-77
Identity = 123/133 (92.48%), Postives = 126/133 (94.74%), Query Frame = 0

Query: 1   MAATAAATVAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS 60
           M +TAAAT A KIGVPAP+KSEKKPPTNFTRL V YPNCFLNTRPKVPAIRALGQEGNSS
Sbjct: 37  MVSTAAATAALKIGVPAPIKSEKKPPTNFTRLAVCYPNCFLNTRPKVPAIRALGQEGNSS 96

Query: 61  GGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGSTIFPEMTKPNIVQALIMVSTPVVVAI 120
           GGDDDTGISQ+DVQFVLKMAAGSIAVGGGIKYGS IFPEMTKPNIVQALIMVSTPVVVAI
Sbjct: 97  GGDDDTGISQQDVQFVLKMAAGSIAVGGGIKYGSIIFPEMTKPNIVQALIMVSTPVVVAI 156

Query: 121 WLLINQSRQDRQS 133
            LLINQSRQDRQS
Sbjct: 157 CLLINQSRQDRQS 169

BLAST of Csor.00g134350 vs. ExPASy TrEMBL
Match: A0A6J1GTV4 (uncharacterized protein LOC111457518 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457518 PE=4 SV=1)

HSP 1 Score: 255 bits (651), Expect = 1.22e-85
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 0

Query: 1   MAATAAATVAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS 60
           MAATAAAT AWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS
Sbjct: 1   MAATAAATGAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS 60

Query: 61  GGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGSTIFPEMTKPNIVQALIMVSTPVVVAI 120
           GGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGS IFPEMTKPNIVQALIMVSTPVVVAI
Sbjct: 61  GGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGSIIFPEMTKPNIVQALIMVSTPVVVAI 120

Query: 121 WLLINQSRQDRQS 133
           WLLINQSRQDRQS
Sbjct: 121 WLLINQSRQDRQS 133

BLAST of Csor.00g134350 vs. ExPASy TrEMBL
Match: A0A6J1GU58 (uncharacterized protein LOC111457518 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457518 PE=4 SV=1)

HSP 1 Score: 248 bits (634), Expect = 4.63e-83
Identity = 130/133 (97.74%), Postives = 130/133 (97.74%), Query Frame = 0

Query: 1   MAATAAATVAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS 60
           MAATAAAT AWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS
Sbjct: 1   MAATAAATGAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS 60

Query: 61  GGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGSTIFPEMTKPNIVQALIMVSTPVVVAI 120
           GGDDDTGISQ DVQFVLKMAAGSIAVGGGIKYGS IFPEMTKPNIVQALIMVSTPVVVAI
Sbjct: 61  GGDDDTGISQ-DVQFVLKMAAGSIAVGGGIKYGSIIFPEMTKPNIVQALIMVSTPVVVAI 120

Query: 121 WLLINQSRQDRQS 133
           WLLINQSRQDRQS
Sbjct: 121 WLLINQSRQDRQS 132

BLAST of Csor.00g134350 vs. ExPASy TrEMBL
Match: A0A6J1IQM2 (uncharacterized protein LOC111479627 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479627 PE=4 SV=1)

HSP 1 Score: 237 bits (604), Expect = 5.99e-78
Identity = 123/133 (92.48%), Postives = 126/133 (94.74%), Query Frame = 0

Query: 1   MAATAAATVAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS 60
           M +TAAAT A KIGVPAP+KSEKKPPTNFTRL V YPNCFLNTRPKVPAIRALGQEGNSS
Sbjct: 37  MVSTAAATAALKIGVPAPIKSEKKPPTNFTRLAVCYPNCFLNTRPKVPAIRALGQEGNSS 96

Query: 61  GGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGSTIFPEMTKPNIVQALIMVSTPVVVAI 120
           GGDDDTGISQ+DVQFVLKMAAGSIAVGGGIKYGS IFPEMTKPNIVQALIMVSTPVVVAI
Sbjct: 97  GGDDDTGISQQDVQFVLKMAAGSIAVGGGIKYGSIIFPEMTKPNIVQALIMVSTPVVVAI 156

Query: 121 WLLINQSRQDRQS 133
            LLINQSRQDRQS
Sbjct: 157 CLLINQSRQDRQS 169

BLAST of Csor.00g134350 vs. ExPASy TrEMBL
Match: A0A6J1IYF9 (uncharacterized protein LOC111479627 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479627 PE=4 SV=1)

HSP 1 Score: 231 bits (590), Expect = 2.37e-76
Identity = 123/133 (92.48%), Postives = 125/133 (93.98%), Query Frame = 0

Query: 1   MAATAAATVAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRALGQEGNSS 60
           M +TAAAT A KIGVPAP+KSEKKPPTNFTRL V YPNCFLNTRPKVPAIRALGQEGNSS
Sbjct: 1   MVSTAAATAALKIGVPAPIKSEKKPPTNFTRLAVCYPNCFLNTRPKVPAIRALGQEGNSS 60

Query: 61  GGDDDTGISQEDVQFVLKMAAGSIAVGGGIKYGSTIFPEMTKPNIVQALIMVSTPVVVAI 120
           GGDDDTGISQ DVQFVLKMAAGSIAVGGGIKYGS IFPEMTKPNIVQALIMVSTPVVVAI
Sbjct: 61  GGDDDTGISQ-DVQFVLKMAAGSIAVGGGIKYGSIIFPEMTKPNIVQALIMVSTPVVVAI 120

Query: 121 WLLINQSRQDRQS 133
            LLINQSRQDRQS
Sbjct: 121 CLLINQSRQDRQS 132

BLAST of Csor.00g134350 vs. ExPASy TrEMBL
Match: A0A6J1DKQ3 (uncharacterized protein LOC111020963 OS=Momordica charantia OX=3673 GN=LOC111020963 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 9.70e-55
Identity = 104/143 (72.73%), Postives = 116/143 (81.12%), Query Frame = 0

Query: 1   MAATAA-ATVAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRAL-----G 60
           MAATAA AT A KIG+PAPVK EKK  TNFTRLTVRYPNC LNT PKV AIRAL     G
Sbjct: 1   MAATAATATGALKIGIPAPVKPEKKA-TNFTRLTVRYPNCTLNTWPKVSAIRALDPETRG 60

Query: 61  QEGNSSGGDDDTG----ISQEDVQFVLKMAAGSIAVGGGIKYGSTIFPEMTKPNIVQALI 120
           + GNSSG  DDTG    I+QEDVQF+LK+ AGSIA G GIKYGS IFP++ KPN+VQALI
Sbjct: 61  EGGNSSG-SDDTGAGDFINQEDVQFLLKLVAGSIAGGAGIKYGSIIFPDIAKPNLVQALI 120

Query: 121 MVSTPVVVAIWLLINQSRQDRQS 133
           M+STPVV+AIWLLI QSR++RQS
Sbjct: 121 MISTPVVLAIWLLIKQSREERQS 141

BLAST of Csor.00g134350 vs. TAIR 10
Match: AT3G15900.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.9e-11
Identity = 40/119 (33.61%), Postives = 64/119 (53.78%), Query Frame = 0

Query: 13  IGVPAPVKSEK-----KPPTNFTRLTVRYPNCF---LNTRPKVPAIRALGQEGNSSGGDD 72
           IGVP   +S       +P    T  +V++   F    N      + R +  +  S   D+
Sbjct: 12  IGVPTLSRSSSVHRSLEPTKKMTMSSVKFVTSFRNPSNCSGTKRSFRVMASDDRSEQADN 71

Query: 73  DTGISQEDVQFVLKMAAGSIAVGGGIKYGSTIFPEMTKPNIVQALIMVSTPVVVAIWLL 124
             GI QED+ ++LK+  GS+A    IKYGS +FP++T+PN+  AL ++  PVV+++ LL
Sbjct: 72  GQGI-QEDLNYLLKIGVGSVAGAAIIKYGSVLFPQITRPNLTLALFIIIAPVVISVILL 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6581960.12.63e-87100.00hypothetical protein SDJN03_21962, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022955512.12.52e-8598.50uncharacterized protein LOC111457518 isoform X1 [Cucurbita moschata] >KAG7018380... [more]
XP_022955513.19.56e-8397.74uncharacterized protein LOC111457518 isoform X2 [Cucurbita moschata][more]
XP_023528959.11.35e-8095.49uncharacterized protein LOC111791721 [Cucurbita pepo subsp. pepo][more]
XP_022980152.11.24e-7792.48uncharacterized protein LOC111479627 isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1GTV41.22e-8598.50uncharacterized protein LOC111457518 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1GU584.63e-8397.74uncharacterized protein LOC111457518 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1IQM25.99e-7892.48uncharacterized protein LOC111479627 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1IYF92.37e-7692.48uncharacterized protein LOC111479627 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1DKQ39.70e-5572.73uncharacterized protein LOC111020963 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
Match NameE-valueIdentityDescription
AT3G15900.12.9e-1133.61unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37224OS02G0804400 PROTEINcoord: 22..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g134350.m01Csor.00g134350.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane