Csor.00g133260 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g133260
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr14: 13496879 .. 13497181 (-)
RNA-Seq Expression	Csor.00g133260
Synteny	Csor.00g133260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAATGTGAGTTGGGAGATAACCCGAGTTCACGACGGCGGCGTTCCTGCAGTTACAGGCGGCAGCGGACGGAGGACTCCATGCGAGGGAACGCGGGTCCATGGTTCCGGGATCGTCGAGCAATCTGAAACCGGCGAACGACTCACGACTATGCAGAAGCAACCGGCGAACCCCACTGCAACTCCTGCGGGCTCCTACACCTGCTGCAGCTTCTTCCTATTGACGATGATTCAAGACCGCAGCAGACTCCGGCGACGGCTGATTCTCAGGCATCCAGACAGTGGTGGAGGAAGAAAATAA

mRNA sequence

ATGCATAATGTGAGTTGGGAGATAACCCGAGTTCACGACGGCGGCGTTCCTGCAGTTACAGGCGGCAGCGGACGGAGGACTCCATGCGAGGGAACGCGGGTCCATGGTTCCGGGATCGTCGAGCAATCTGAAACCGGCGAACGACTCACGACTATGCAGAAGCAACCGGCGAACCCCACTGCAACTCCTGCGGGCTCCTACACCTGCTGCAGCTTCTTCCTATTGACGATGATTCAAGACCGCAGCAGACTCCGGCGACGGCTGATTCTCAGGCATCCAGACAGTGGTGGAGGAAGAAAATAA

Coding sequence (CDS)

ATGCATAATGTGAGTTGGGAGATAACCCGAGTTCACGACGGCGGCGTTCCTGCAGTTACAGGCGGCAGCGGACGGAGGACTCCATGCGAGGGAACGCGGGTCCATGGTTCCGGGATCGTCGAGCAATCTGAAACCGGCGAACGACTCACGACTATGCAGAAGCAACCGGCGAACCCCACTGCAACTCCTGCGGGCTCCTACACCTGCTGCAGCTTCTTCCTATTGACGATGATTCAAGACCGCAGCAGACTCCGGCGACGGCTGATTCTCAGGCATCCAGACAGTGGTGGAGGAAGAAAATAA

Protein sequence

MHNVSWEITRVHDGGVPAVTGGSGRRTPCEGTRVHGSGIVEQSETGERLTTMQKQPANPTATPAGSYTCCSFFLLTMIQDRSRLRRRLILRHPDSGGGRK

Homology

[Close]

BLAST of Csor.00g133260 vs. NCBI nr
Match: KAG6582067.1 (hypothetical protein SDJN03_22069, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207 bits (528), Expect = 1.28e-67
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MHNVSWEITRVHDGGVPAVTGGSGRRTPCEGTRVHGSGIVEQSETGERLTTMQKQPANPT 60
           MHNVSWEITRVHDGGVPAVTGGSGRRTPCEGTRVHGSGIVEQSETGERLTTMQKQPANPT
Sbjct: 1   MHNVSWEITRVHDGGVPAVTGGSGRRTPCEGTRVHGSGIVEQSETGERLTTMQKQPANPT 60

Query: 61  ATPAGSYTCCSFFLLTMIQDRSRLRRRLILRHPDSGGGRK 100
           ATPAGSYTCCSFFLLTMIQDRSRLRRRLILRHPDSGGGRK
Sbjct: 61  ATPAGSYTCCSFFLLTMIQDRSRLRRRLILRHPDSGGGRK 100

The following BLAST results are available for this feature:

BLAST of Csor.00g133260 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g133260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6582067.1	1.28e-67	100.00	hypothetical protein SDJN03_22069, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g133260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g133260 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g133260.m01	Csor.00g133260.m01	mRNA