Csor.00g133020 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g133020
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr16: 795516 .. 796167 (+)
RNA-Seq ExpressionCsor.00g133020
SyntenyCsor.00g133020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTTCATTTAATATCCGCTTTTACAACGGCCCCTTTTCCTTTCAACGTCTCTTTCTCCCTTCAAATTCCCCTTTCCAAGGTTCACAATTCAATCGCTACATTCCTCTTCTCTCAAATCATTCCTCCAATCCTTCACCAGATTGCTTCTTCTTCAGGTGCACTTTCAAATCCTCGTCTACCATATATGGATGTTCTTTTAATTTCTTGATAATCCGGCATGACCCATTAGGTTAATTCGCTTCAATCATGTTTTTTAGTAGTTCCAACACATTGAGCTGATTTGTACATAACTTTTAGAAATGGATTCAATCATTTGGTCTCGATTTTTGTCGGTTATGCTGAATTTGACGGTTCCCATTTGTGTTCTTAGCAAATATTTTAACAAATTGTAATTTGATGCTGTAGACAATTTGGGGTTCTTGAAATTTGATTCCTTTGTTACTATGTTTCTCTAATTGTTGTTTATTGTAGATTTGGCCTTCTTTCGTGAAATCTCTTCAAGATGTCTGTCACTCAAAATGATCCACTTCTGCAAGTGGAAACCACGTGTGGTTCACTTCTTTATGAACTTCAGGTTTGTCTCGAACTTCAATCTCTTTTTTGATGCTTATCTCATTCTGTACATAACAATTTTGAATATCAGATAA

mRNA sequence

ATGGGGCTTCATTTAATATCCGCTTTTACAACGGCCCCTTTTCCTTTCAACGTCTCTTTCTCCCTTCAAATTCCCCTTTCCAAGGTTCACAATTCAATCGCTACATTCCTCTTCTCTCAAATCATTCCTCCAATCCTTCACCAGATTGCTTCTTCTTCAGATTTGGCCTTCTTTCGTGAAATCTCTTCAAGATGTCTGTCACTCAAAATGATCCACTTCTGCAAGTGGAAACCACGTGTGGTTCACTTCTTTATGAACTTCAGATAA

Coding sequence (CDS)

ATGGGGCTTCATTTAATATCCGCTTTTACAACGGCCCCTTTTCCTTTCAACGTCTCTTTCTCCCTTCAAATTCCCCTTTCCAAGGTTCACAATTCAATCGCTACATTCCTCTTCTCTCAAATCATTCCTCCAATCCTTCACCAGATTGCTTCTTCTTCAGATTTGGCCTTCTTTCGTGAAATCTCTTCAAGATGTCTGTCACTCAAAATGATCCACTTCTGCAAGTGGAAACCACGTGTGGTTCACTTCTTTATGAACTTCAGATAA

Protein sequence

MGLHLISAFTTAPFPFNVSFSLQIPLSKVHNSIATFLFSQIIPPILHQIASSSDLAFFREISSRCLSLKMIHFCKWKPRVVHFFMNFR
Homology
[Close]
BLAST of Csor.00g133020 vs. NCBI nr
Match: KAG6576778.1 (hypothetical protein SDJN03_24352, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176 bits (447), Expect = 1.22e-55
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MGLHLISAFTTAPFPFNVSFSLQIPLSKVHNSIATFLFSQIIPPILHQIASSSDLAFFRE 60
          MGLHLISAFTTAPFPFNVSFSLQIPLSKVHNSIATFLFSQIIPPILHQIASSSDLAFFRE
Sbjct: 1  MGLHLISAFTTAPFPFNVSFSLQIPLSKVHNSIATFLFSQIIPPILHQIASSSDLAFFRE 60

Query: 61 ISSRCLSLKMIHFCKWKPRVVHFFMNFR 88
          ISSRCLSLKMIHFCKWKPRVVHFFMNFR
Sbjct: 61 ISSRCLSLKMIHFCKWKPRVVHFFMNFR 88

[Close]
BLAST of Csor.00g133020 vs. ExPASy TrEMBL
Match: A0A0A0L686 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176880 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.20e-11
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0 

Query: 60  EISSRCLSLKMIHFCKWKPRVVHFFMNFR 88
           EISSRCLSLKMIH CKWKPRVVHFFMNFR
Sbjct: 89  EISSRCLSLKMIHSCKWKPRVVHFFMNFR 117

The following BLAST results are available for this feature:
BLAST of Csor.00g133020 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g133020 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6576778.11.22e-55100.00hypothetical protein SDJN03_24352, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g133020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6867.20e-1196.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176880 PE=4 SV=1[more]
BLAST of Csor.00g133020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g133020.m01Csor.00g133020.m01mRNA