Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACATCCGCCTGACCATAAGATTCTAGCACTTGCTGCGGCGAGCCCGACAGGACCGGCACGGCAAGAGTTGTCTGTGGTAATTCCACGGCATGGAGATCTTCGTCTCTCACAAGAAATTCTCGGAGTTGAATCGTATCACGGCAATCGAGTTTCGTCGTGGGGAGAAGATGAGAAGGTTATAAGAACCCATTACAGAGAAGTGGATTTTGTTTTGCATCGAACAGCAATCTGGATAGACCACGTGGCGGGTGGCTTGATGTCGTTAGATCGAGGAAAATAGTCAACGCCGCCACCGTCGGTGGTGGGGTTTAAAACGCGATGGAGCAAAAAGATCTGTTTGGAGGGGTGGTCCGGTGGGTCGACGACGCATCTTTGCTGCATCGGGAAAGGGCCTCATGTTGGTGACGAAAGTGGGGGCGGAGGTATCGAAGTCCGGCGGCGATGGGAGGAGGAGGAGGAGGAGCCAGTGGGTTGTGAAGGTGGATAAATGCACCGGAGAAGAAGAACAGAACATGTCTTTAGGGTTAGGCTTCCACAGGGGAAAGTCATTCAAGCCCTGA
mRNA sequence
ATGAAACATCCGCCTGACCATAAGATTCTAGCACTTGCTGCGGCGAGCCCGACAGGACCGGCACGGCAAGAGTTGTCTGTGGTAATTCCACGGCATGGAGATCTTCGTCTCTCACAAGAAATTCTCGGAGTTGAATCGTATCACGGCAATCGAGTTTCGTCGTGGGGAGAAGATGAGAAGATCGAGGAAAATAGTCAACGCCGCCACCGTCGGTGGTGGGGTTTAAAACGCGATGGAGCAAAAAGATCTGTTTGGAGGGGTGGTCCGGTGGGTCGACGACGCATCTTTGCTGCATCGGGAAAGGGCCTCATGTTGGTGACGAAAGTGGGGGCGGAGGTATCGAAGTCCGGCGGCGATGGGAGGAGGAGGAGGAGGAGCCAGTGGGTTGTGAAGGTGGATAAATGCACCGGAGAAGAAGAACAGAACATGTCTTTAGGGTTAGGCTTCCACAGGGGAAAGTCATTCAAGCCCTGA
Coding sequence (CDS)
ATGAAACATCCGCCTGACCATAAGATTCTAGCACTTGCTGCGGCGAGCCCGACAGGACCGGCACGGCAAGAGTTGTCTGTGGTAATTCCACGGCATGGAGATCTTCGTCTCTCACAAGAAATTCTCGGAGTTGAATCGTATCACGGCAATCGAGTTTCGTCGTGGGGAGAAGATGAGAAGATCGAGGAAAATAGTCAACGCCGCCACCGTCGGTGGTGGGGTTTAAAACGCGATGGAGCAAAAAGATCTGTTTGGAGGGGTGGTCCGGTGGGTCGACGACGCATCTTTGCTGCATCGGGAAAGGGCCTCATGTTGGTGACGAAAGTGGGGGCGGAGGTATCGAAGTCCGGCGGCGATGGGAGGAGGAGGAGGAGGAGCCAGTGGGTTGTGAAGGTGGATAAATGCACCGGAGAAGAAGAACAGAACATGTCTTTAGGGTTAGGCTTCCACAGGGGAAAGTCATTCAAGCCCTGA
Protein sequence
MKHPPDHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKIEENSQRRHRRWWGLKRDGAKRSVWRGGPVGRRRIFAASGKGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEEEQNMSLGLGFHRGKSFKP
Homology
BLAST of Csor.00g132970 vs. NCBI nr
Match:
KAG6576783.1 (hypothetical protein SDJN03_24357, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 320 bits (819), Expect = 3.65e-110
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query: 1 MKHPPDHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEK 60
MKHPPDHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEK
Sbjct: 1 MKHPPDHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEK 60
Query: 61 IEENSQRRHRRWWGLKRDGAKRSVWRGGPVGRRRIFAASGKGLMLVTKVGAEVSKSGGDG 120
IEENSQRRHRRWWGLKRDGAKRSVWRGGPVGRRRIFAASGKGLMLVTKVGAEVSKSGGDG
Sbjct: 61 IEENSQRRHRRWWGLKRDGAKRSVWRGGPVGRRRIFAASGKGLMLVTKVGAEVSKSGGDG 120
Query: 121 RRRRRSQWVVKVDKCTGEEEQNMSLGLGFHRGKSFKP 157
RRRRRSQWVVKVDKCTGEEEQNMSLGLGFHRGKSFKP
Sbjct: 121 RRRRRSQWVVKVDKCTGEEEQNMSLGLGFHRGKSFKP 157
BLAST of Csor.00g132970 vs. NCBI nr
Match:
XP_023522325.1 (uncharacterized protein LOC111786241 [Cucurbita pepo subsp. pepo] >XP_023551838.1 uncharacterized protein LOC111809688 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 105 bits (262), Expect = 9.32e-25
Identity = 85/169 (50.30%), Postives = 91/169 (53.85%), Query Frame = 0
Query: 6 DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKI---- 65
DHKILALAAA+ R + VIPR DLRLSQEILGVESYHG GE E++
Sbjct: 53 DHKILALAAAARQTGGR--VVCVIPRQEDLRLSQEILGVESYHGIEFVV-GEAERVIRTH 112
Query: 66 -------------------------EENSQRRHRRWWGLKRDG----AKRSV--WRGGPV 125
+NSQR G +KRSV W GG
Sbjct: 113 YREVDFVLIDCNLDSHVAVLDVVRSRKNSQR------ATVVVGFNAMSKRSVGGWSGGST 172
Query: 126 GRRRIFAASGKGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 139
GKGLM VTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE
Sbjct: 173 TH---LLPIGKGLM-VTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 208
BLAST of Csor.00g132970 vs. NCBI nr
Match:
XP_022985506.1 (uncharacterized protein LOC111483494 [Cucurbita maxima])
HSP 1 Score: 104 bits (259), Expect = 2.61e-24
Identity = 83/163 (50.92%), Postives = 91/163 (55.83%), Query Frame = 0
Query: 6 DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKIEEN- 65
DHKILALAAA+ R + VIPR DLRLSQEILGVESYHG GE EK+
Sbjct: 53 DHKILALAAAARQTGGR--VICVIPRQEDLRLSQEILGVESYHGIEFVV-GEAEKVIRTH 112
Query: 66 ------------------------SQRRHRRWWGLKRDGA--KRSV--WRGGPVGRRRIF 125
S++ ++R + A KRSV W GG
Sbjct: 113 YREVDFVLIDCNLDSHVAVLDVVRSRKNNQRATVVVGFNAMSKRSVGGWSGGSTTH---L 172
Query: 126 AASGKGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 139
GKGLM VTKVGAEVSKSG DGRRRRRSQWVVKVDKCTGEE
Sbjct: 173 LPIGKGLM-VTKVGAEVSKSGSDGRRRRRSQWVVKVDKCTGEE 208
BLAST of Csor.00g132970 vs. NCBI nr
Match:
KAG6576788.1 (40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 107 bits (266), Expect = 4.27e-24
Identity = 84/164 (51.22%), Postives = 90/164 (54.88%), Query Frame = 0
Query: 6 DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKI---- 65
DHKILALAAA+ R + VIPR DLRLSQEILGVESYHG GE EK+
Sbjct: 53 DHKILALAAAARQTGGR--VVCVIPRQEDLRLSQEILGVESYHGIEFVV-GEAEKVIRTH 112
Query: 66 ------------------------EENSQRRHRRWWGLKRDGAKRSV--WRGGPVGRRRI 125
N+ +R G +KRSV W GG
Sbjct: 113 YREVDFVLIDCNLDSHVAVLDVVRSRNNSQRATVVVGFNAM-SKRSVGGWSGGSTTH--- 172
Query: 126 FAASGKGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 139
GKGL LVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE
Sbjct: 173 LLPIGKGL-LVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 208
BLAST of Csor.00g132970 vs. NCBI nr
Match:
XP_022922645.1 (uncharacterized protein LOC111430589 [Cucurbita moschata])
HSP 1 Score: 100 bits (248), Expect = 1.10e-22
Identity = 85/169 (50.30%), Postives = 90/169 (53.25%), Query Frame = 0
Query: 6 DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKI---- 65
DHKILALAAA+ R + VIPR DLRLSQEILGVESYHG GE EK+
Sbjct: 53 DHKILALAAAARQTGGR--VVCVIPRQEDLRLSQEILGVESYHGIEFVV-GEAEKVIRTH 112
Query: 66 -------------------------EENSQRRHRRWWGLKRDG----AKRSV--WRGGPV 125
+NSQR G +KRSV W GG
Sbjct: 113 YREVDFVLIDCNLDSHVAVLDVVRSRKNSQR------ATVVVGFNAMSKRSVGGWSGGST 172
Query: 126 GRRRIFAASGKGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 139
GKGL LVTKVGAEVSKSGGDGRRRR SQWVVKVDKCTGEE
Sbjct: 173 TH---LLPIGKGL-LVTKVGAEVSKSGGDGRRRR-SQWVVKVDKCTGEE 207
BLAST of Csor.00g132970 vs. ExPASy TrEMBL
Match:
A0A6J1J8E3 (uncharacterized protein LOC111483494 OS=Cucurbita maxima OX=3661 GN=LOC111483494 PE=4 SV=1)
HSP 1 Score: 104 bits (259), Expect = 1.26e-24
Identity = 83/163 (50.92%), Postives = 91/163 (55.83%), Query Frame = 0
Query: 6 DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKIEEN- 65
DHKILALAAA+ R + VIPR DLRLSQEILGVESYHG GE EK+
Sbjct: 53 DHKILALAAAARQTGGR--VICVIPRQEDLRLSQEILGVESYHGIEFVV-GEAEKVIRTH 112
Query: 66 ------------------------SQRRHRRWWGLKRDGA--KRSV--WRGGPVGRRRIF 125
S++ ++R + A KRSV W GG
Sbjct: 113 YREVDFVLIDCNLDSHVAVLDVVRSRKNNQRATVVVGFNAMSKRSVGGWSGGSTTH---L 172
Query: 126 AASGKGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 139
GKGLM VTKVGAEVSKSG DGRRRRRSQWVVKVDKCTGEE
Sbjct: 173 LPIGKGLM-VTKVGAEVSKSGSDGRRRRRSQWVVKVDKCTGEE 208
BLAST of Csor.00g132970 vs. ExPASy TrEMBL
Match:
A0A6J1E9C9 (uncharacterized protein LOC111430589 OS=Cucurbita moschata OX=3662 GN=LOC111430589 PE=4 SV=1)
HSP 1 Score: 100 bits (248), Expect = 5.34e-23
Identity = 85/169 (50.30%), Postives = 90/169 (53.25%), Query Frame = 0
Query: 6 DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKI---- 65
DHKILALAAA+ R + VIPR DLRLSQEILGVESYHG GE EK+
Sbjct: 53 DHKILALAAAARQTGGR--VVCVIPRQEDLRLSQEILGVESYHGIEFVV-GEAEKVIRTH 112
Query: 66 -------------------------EENSQRRHRRWWGLKRDG----AKRSV--WRGGPV 125
+NSQR G +KRSV W GG
Sbjct: 113 YREVDFVLIDCNLDSHVAVLDVVRSRKNSQR------ATVVVGFNAMSKRSVGGWSGGST 172
Query: 126 GRRRIFAASGKGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 139
GKGL LVTKVGAEVSKSGGDGRRRR SQWVVKVDKCTGEE
Sbjct: 173 TH---LLPIGKGL-LVTKVGAEVSKSGGDGRRRR-SQWVVKVDKCTGEE 207
BLAST of Csor.00g132970 vs. ExPASy TrEMBL
Match:
A0A1S3AY08 (uncharacterized protein LOC103484000 OS=Cucumis melo OX=3656 GN=LOC103484000 PE=4 SV=1)
HSP 1 Score: 72.0 bits (175), Expect = 3.22e-12
Identity = 68/171 (39.77%), Postives = 80/171 (46.78%), Query Frame = 0
Query: 6 DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKIEENS 65
DHKILALAAA+ G + +I R DL +SQ ILG+ S+ GE EK+ +
Sbjct: 53 DHKILALAAAA--GQTGGRVVCIIQRQEDLHVSQAILGMVSHDHGIEFVVGEAEKLIKTQ 112
Query: 66 QR---------------------RHRRWWGLKRD---------GAKRSVWRGGPVGRRRI 125
R RR K D A GG G
Sbjct: 113 YTEVDFVLIDCNLDSHAAVLEAVRSRR----KNDQGATLVVGFNAMSKRCEGGATGWSEG 172
Query: 126 FAAS----GKGLMLVTKVGAEVSKSGGDGRR---RRRSQWVVKVDKCTGEE 139
GKG+M VT+VGAEVSK+G DGRR RR+SQWVVKVDKCTGEE
Sbjct: 173 LTTHLLPIGKGVM-VTRVGAEVSKAGDDGRRMRRRRQSQWVVKVDKCTGEE 216
BLAST of Csor.00g132970 vs. ExPASy TrEMBL
Match:
A0A5D3DJF3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00580 PE=4 SV=1)
HSP 1 Score: 71.2 bits (173), Expect = 6.26e-12
Identity = 68/171 (39.77%), Postives = 79/171 (46.20%), Query Frame = 0
Query: 6 DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKIEENS 65
DHKILALAAA+ G + +I R DL +SQ ILG+ S+ GE EK+ +
Sbjct: 53 DHKILALAAAA--GQTGGRVVCIIQRQEDLHVSQAILGMVSHDHGIEFVVGEAEKLIKTQ 112
Query: 66 QR---------------------RHRRWWGLKRD---------GAKRSVWRGGPVGRRRI 125
R RR K D A GG G
Sbjct: 113 YTEVDFVLIDCNLDSHVAVLEAVRSRR----KNDQGATLVVGFNAMSKRCEGGATGWSEG 172
Query: 126 FAAS----GKGLMLVTKVGAEVSKSGGDGRRRRR---SQWVVKVDKCTGEE 139
GKG+M VT+VGAEVSK+G DGRR RR SQWVVKVDKCTGEE
Sbjct: 173 LTTHLLPIGKGVM-VTRVGAEVSKAGDDGRRMRRRGQSQWVVKVDKCTGEE 216
BLAST of Csor.00g132970 vs. ExPASy TrEMBL
Match:
A0A6J1FT52 (uncharacterized protein LOC111447905 OS=Cucurbita moschata OX=3662 GN=LOC111447905 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 1.42e-11
Identity = 62/159 (38.99%), Postives = 78/159 (49.06%), Query Frame = 0
Query: 6 DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKIEEN- 65
DHKILALAAA G + +IPR DL S+ ILG+E ++ GE EK+ +
Sbjct: 53 DHKILALAAAG--GLTGGRVVCIIPRQEDLHPSRAILGLEPHYPIEFVV-GEAEKLLQTH 112
Query: 66 ------------------------SQRRHRRWWGLKRDGAKRSVWRGGPVGRRRIFAASG 125
S+R+ R + A R G G R G
Sbjct: 113 YREADFVLIDCNLDSHVAVIEGIGSRRKFERATVVVGFNAMRKRCGGWSGGWRTQLLPIG 172
Query: 126 KGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 139
KG+M++ K+ AE+SKS GDGRRR QWVVKVDKCTGEE
Sbjct: 173 KGVMVM-KLAAEISKSSGDGRRR---QWVVKVDKCTGEE 204
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6576783.1 | 3.65e-110 | 100.00 | hypothetical protein SDJN03_24357, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023522325.1 | 9.32e-25 | 50.30 | uncharacterized protein LOC111786241 [Cucurbita pepo subsp. pepo] >XP_023551838.... | [more] |
XP_022985506.1 | 2.61e-24 | 50.92 | uncharacterized protein LOC111483494 [Cucurbita maxima] | [more] |
KAG6576788.1 | 4.27e-24 | 51.22 | 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_022922645.1 | 1.10e-22 | 50.30 | uncharacterized protein LOC111430589 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1J8E3 | 1.26e-24 | 50.92 | uncharacterized protein LOC111483494 OS=Cucurbita maxima OX=3661 GN=LOC111483494... | [more] |
A0A6J1E9C9 | 5.34e-23 | 50.30 | uncharacterized protein LOC111430589 OS=Cucurbita moschata OX=3662 GN=LOC1114305... | [more] |
A0A1S3AY08 | 3.22e-12 | 39.77 | uncharacterized protein LOC103484000 OS=Cucumis melo OX=3656 GN=LOC103484000 PE=... | [more] |
A0A5D3DJF3 | 6.26e-12 | 39.77 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A6J1FT52 | 1.42e-11 | 38.99 | uncharacterized protein LOC111447905 OS=Cucurbita moschata OX=3662 GN=LOC1114479... | [more] |
Match Name | E-value | Identity | Description | |