Csor.00g132970 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g132970
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr16: 819588 .. 820152 (+)
RNA-Seq ExpressionCsor.00g132970
SyntenyCsor.00g132970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACATCCGCCTGACCATAAGATTCTAGCACTTGCTGCGGCGAGCCCGACAGGACCGGCACGGCAAGAGTTGTCTGTGGTAATTCCACGGCATGGAGATCTTCGTCTCTCACAAGAAATTCTCGGAGTTGAATCGTATCACGGCAATCGAGTTTCGTCGTGGGGAGAAGATGAGAAGGTTATAAGAACCCATTACAGAGAAGTGGATTTTGTTTTGCATCGAACAGCAATCTGGATAGACCACGTGGCGGGTGGCTTGATGTCGTTAGATCGAGGAAAATAGTCAACGCCGCCACCGTCGGTGGTGGGGTTTAAAACGCGATGGAGCAAAAAGATCTGTTTGGAGGGGTGGTCCGGTGGGTCGACGACGCATCTTTGCTGCATCGGGAAAGGGCCTCATGTTGGTGACGAAAGTGGGGGCGGAGGTATCGAAGTCCGGCGGCGATGGGAGGAGGAGGAGGAGGAGCCAGTGGGTTGTGAAGGTGGATAAATGCACCGGAGAAGAAGAACAGAACATGTCTTTAGGGTTAGGCTTCCACAGGGGAAAGTCATTCAAGCCCTGA

mRNA sequence

ATGAAACATCCGCCTGACCATAAGATTCTAGCACTTGCTGCGGCGAGCCCGACAGGACCGGCACGGCAAGAGTTGTCTGTGGTAATTCCACGGCATGGAGATCTTCGTCTCTCACAAGAAATTCTCGGAGTTGAATCGTATCACGGCAATCGAGTTTCGTCGTGGGGAGAAGATGAGAAGATCGAGGAAAATAGTCAACGCCGCCACCGTCGGTGGTGGGGTTTAAAACGCGATGGAGCAAAAAGATCTGTTTGGAGGGGTGGTCCGGTGGGTCGACGACGCATCTTTGCTGCATCGGGAAAGGGCCTCATGTTGGTGACGAAAGTGGGGGCGGAGGTATCGAAGTCCGGCGGCGATGGGAGGAGGAGGAGGAGGAGCCAGTGGGTTGTGAAGGTGGATAAATGCACCGGAGAAGAAGAACAGAACATGTCTTTAGGGTTAGGCTTCCACAGGGGAAAGTCATTCAAGCCCTGA

Coding sequence (CDS)

ATGAAACATCCGCCTGACCATAAGATTCTAGCACTTGCTGCGGCGAGCCCGACAGGACCGGCACGGCAAGAGTTGTCTGTGGTAATTCCACGGCATGGAGATCTTCGTCTCTCACAAGAAATTCTCGGAGTTGAATCGTATCACGGCAATCGAGTTTCGTCGTGGGGAGAAGATGAGAAGATCGAGGAAAATAGTCAACGCCGCCACCGTCGGTGGTGGGGTTTAAAACGCGATGGAGCAAAAAGATCTGTTTGGAGGGGTGGTCCGGTGGGTCGACGACGCATCTTTGCTGCATCGGGAAAGGGCCTCATGTTGGTGACGAAAGTGGGGGCGGAGGTATCGAAGTCCGGCGGCGATGGGAGGAGGAGGAGGAGGAGCCAGTGGGTTGTGAAGGTGGATAAATGCACCGGAGAAGAAGAACAGAACATGTCTTTAGGGTTAGGCTTCCACAGGGGAAAGTCATTCAAGCCCTGA

Protein sequence

MKHPPDHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKIEENSQRRHRRWWGLKRDGAKRSVWRGGPVGRRRIFAASGKGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEEEQNMSLGLGFHRGKSFKP
Homology
BLAST of Csor.00g132970 vs. NCBI nr
Match: KAG6576783.1 (hypothetical protein SDJN03_24357, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 320 bits (819), Expect = 3.65e-110
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0

Query: 1   MKHPPDHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEK 60
           MKHPPDHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEK
Sbjct: 1   MKHPPDHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEK 60

Query: 61  IEENSQRRHRRWWGLKRDGAKRSVWRGGPVGRRRIFAASGKGLMLVTKVGAEVSKSGGDG 120
           IEENSQRRHRRWWGLKRDGAKRSVWRGGPVGRRRIFAASGKGLMLVTKVGAEVSKSGGDG
Sbjct: 61  IEENSQRRHRRWWGLKRDGAKRSVWRGGPVGRRRIFAASGKGLMLVTKVGAEVSKSGGDG 120

Query: 121 RRRRRSQWVVKVDKCTGEEEQNMSLGLGFHRGKSFKP 157
           RRRRRSQWVVKVDKCTGEEEQNMSLGLGFHRGKSFKP
Sbjct: 121 RRRRRSQWVVKVDKCTGEEEQNMSLGLGFHRGKSFKP 157

BLAST of Csor.00g132970 vs. NCBI nr
Match: XP_023522325.1 (uncharacterized protein LOC111786241 [Cucurbita pepo subsp. pepo] >XP_023551838.1 uncharacterized protein LOC111809688 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105 bits (262), Expect = 9.32e-25
Identity = 85/169 (50.30%), Postives = 91/169 (53.85%), Query Frame = 0

Query: 6   DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKI---- 65
           DHKILALAAA+     R  +  VIPR  DLRLSQEILGVESYHG      GE E++    
Sbjct: 53  DHKILALAAAARQTGGR--VVCVIPRQEDLRLSQEILGVESYHGIEFVV-GEAERVIRTH 112

Query: 66  -------------------------EENSQRRHRRWWGLKRDG----AKRSV--WRGGPV 125
                                     +NSQR           G    +KRSV  W GG  
Sbjct: 113 YREVDFVLIDCNLDSHVAVLDVVRSRKNSQR------ATVVVGFNAMSKRSVGGWSGGST 172

Query: 126 GRRRIFAASGKGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 139
                    GKGLM VTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE
Sbjct: 173 TH---LLPIGKGLM-VTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 208

BLAST of Csor.00g132970 vs. NCBI nr
Match: XP_022985506.1 (uncharacterized protein LOC111483494 [Cucurbita maxima])

HSP 1 Score: 104 bits (259), Expect = 2.61e-24
Identity = 83/163 (50.92%), Postives = 91/163 (55.83%), Query Frame = 0

Query: 6   DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKIEEN- 65
           DHKILALAAA+     R  +  VIPR  DLRLSQEILGVESYHG      GE EK+    
Sbjct: 53  DHKILALAAAARQTGGR--VICVIPRQEDLRLSQEILGVESYHGIEFVV-GEAEKVIRTH 112

Query: 66  ------------------------SQRRHRRWWGLKRDGA--KRSV--WRGGPVGRRRIF 125
                                   S++ ++R   +    A  KRSV  W GG        
Sbjct: 113 YREVDFVLIDCNLDSHVAVLDVVRSRKNNQRATVVVGFNAMSKRSVGGWSGGSTTH---L 172

Query: 126 AASGKGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 139
              GKGLM VTKVGAEVSKSG DGRRRRRSQWVVKVDKCTGEE
Sbjct: 173 LPIGKGLM-VTKVGAEVSKSGSDGRRRRRSQWVVKVDKCTGEE 208

BLAST of Csor.00g132970 vs. NCBI nr
Match: KAG6576788.1 (40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107 bits (266), Expect = 4.27e-24
Identity = 84/164 (51.22%), Postives = 90/164 (54.88%), Query Frame = 0

Query: 6   DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKI---- 65
           DHKILALAAA+     R  +  VIPR  DLRLSQEILGVESYHG      GE EK+    
Sbjct: 53  DHKILALAAAARQTGGR--VVCVIPRQEDLRLSQEILGVESYHGIEFVV-GEAEKVIRTH 112

Query: 66  ------------------------EENSQRRHRRWWGLKRDGAKRSV--WRGGPVGRRRI 125
                                     N+ +R     G     +KRSV  W GG       
Sbjct: 113 YREVDFVLIDCNLDSHVAVLDVVRSRNNSQRATVVVGFNAM-SKRSVGGWSGGSTTH--- 172

Query: 126 FAASGKGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 139
               GKGL LVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE
Sbjct: 173 LLPIGKGL-LVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 208

BLAST of Csor.00g132970 vs. NCBI nr
Match: XP_022922645.1 (uncharacterized protein LOC111430589 [Cucurbita moschata])

HSP 1 Score: 100 bits (248), Expect = 1.10e-22
Identity = 85/169 (50.30%), Postives = 90/169 (53.25%), Query Frame = 0

Query: 6   DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKI---- 65
           DHKILALAAA+     R  +  VIPR  DLRLSQEILGVESYHG      GE EK+    
Sbjct: 53  DHKILALAAAARQTGGR--VVCVIPRQEDLRLSQEILGVESYHGIEFVV-GEAEKVIRTH 112

Query: 66  -------------------------EENSQRRHRRWWGLKRDG----AKRSV--WRGGPV 125
                                     +NSQR           G    +KRSV  W GG  
Sbjct: 113 YREVDFVLIDCNLDSHVAVLDVVRSRKNSQR------ATVVVGFNAMSKRSVGGWSGGST 172

Query: 126 GRRRIFAASGKGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 139
                    GKGL LVTKVGAEVSKSGGDGRRRR SQWVVKVDKCTGEE
Sbjct: 173 TH---LLPIGKGL-LVTKVGAEVSKSGGDGRRRR-SQWVVKVDKCTGEE 207

BLAST of Csor.00g132970 vs. ExPASy TrEMBL
Match: A0A6J1J8E3 (uncharacterized protein LOC111483494 OS=Cucurbita maxima OX=3661 GN=LOC111483494 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 1.26e-24
Identity = 83/163 (50.92%), Postives = 91/163 (55.83%), Query Frame = 0

Query: 6   DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKIEEN- 65
           DHKILALAAA+     R  +  VIPR  DLRLSQEILGVESYHG      GE EK+    
Sbjct: 53  DHKILALAAAARQTGGR--VICVIPRQEDLRLSQEILGVESYHGIEFVV-GEAEKVIRTH 112

Query: 66  ------------------------SQRRHRRWWGLKRDGA--KRSV--WRGGPVGRRRIF 125
                                   S++ ++R   +    A  KRSV  W GG        
Sbjct: 113 YREVDFVLIDCNLDSHVAVLDVVRSRKNNQRATVVVGFNAMSKRSVGGWSGGSTTH---L 172

Query: 126 AASGKGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 139
              GKGLM VTKVGAEVSKSG DGRRRRRSQWVVKVDKCTGEE
Sbjct: 173 LPIGKGLM-VTKVGAEVSKSGSDGRRRRRSQWVVKVDKCTGEE 208

BLAST of Csor.00g132970 vs. ExPASy TrEMBL
Match: A0A6J1E9C9 (uncharacterized protein LOC111430589 OS=Cucurbita moschata OX=3662 GN=LOC111430589 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 5.34e-23
Identity = 85/169 (50.30%), Postives = 90/169 (53.25%), Query Frame = 0

Query: 6   DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKI---- 65
           DHKILALAAA+     R  +  VIPR  DLRLSQEILGVESYHG      GE EK+    
Sbjct: 53  DHKILALAAAARQTGGR--VVCVIPRQEDLRLSQEILGVESYHGIEFVV-GEAEKVIRTH 112

Query: 66  -------------------------EENSQRRHRRWWGLKRDG----AKRSV--WRGGPV 125
                                     +NSQR           G    +KRSV  W GG  
Sbjct: 113 YREVDFVLIDCNLDSHVAVLDVVRSRKNSQR------ATVVVGFNAMSKRSVGGWSGGST 172

Query: 126 GRRRIFAASGKGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 139
                    GKGL LVTKVGAEVSKSGGDGRRRR SQWVVKVDKCTGEE
Sbjct: 173 TH---LLPIGKGL-LVTKVGAEVSKSGGDGRRRR-SQWVVKVDKCTGEE 207

BLAST of Csor.00g132970 vs. ExPASy TrEMBL
Match: A0A1S3AY08 (uncharacterized protein LOC103484000 OS=Cucumis melo OX=3656 GN=LOC103484000 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.22e-12
Identity = 68/171 (39.77%), Postives = 80/171 (46.78%), Query Frame = 0

Query: 6   DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKIEENS 65
           DHKILALAAA+  G     +  +I R  DL +SQ ILG+ S+        GE EK+ +  
Sbjct: 53  DHKILALAAAA--GQTGGRVVCIIQRQEDLHVSQAILGMVSHDHGIEFVVGEAEKLIKTQ 112

Query: 66  QR---------------------RHRRWWGLKRD---------GAKRSVWRGGPVGRRRI 125
                                  R RR    K D          A      GG  G    
Sbjct: 113 YTEVDFVLIDCNLDSHAAVLEAVRSRR----KNDQGATLVVGFNAMSKRCEGGATGWSEG 172

Query: 126 FAAS----GKGLMLVTKVGAEVSKSGGDGRR---RRRSQWVVKVDKCTGEE 139
                   GKG+M VT+VGAEVSK+G DGRR   RR+SQWVVKVDKCTGEE
Sbjct: 173 LTTHLLPIGKGVM-VTRVGAEVSKAGDDGRRMRRRRQSQWVVKVDKCTGEE 216

BLAST of Csor.00g132970 vs. ExPASy TrEMBL
Match: A0A5D3DJF3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00580 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.26e-12
Identity = 68/171 (39.77%), Postives = 79/171 (46.20%), Query Frame = 0

Query: 6   DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKIEENS 65
           DHKILALAAA+  G     +  +I R  DL +SQ ILG+ S+        GE EK+ +  
Sbjct: 53  DHKILALAAAA--GQTGGRVVCIIQRQEDLHVSQAILGMVSHDHGIEFVVGEAEKLIKTQ 112

Query: 66  QR---------------------RHRRWWGLKRD---------GAKRSVWRGGPVGRRRI 125
                                  R RR    K D          A      GG  G    
Sbjct: 113 YTEVDFVLIDCNLDSHVAVLEAVRSRR----KNDQGATLVVGFNAMSKRCEGGATGWSEG 172

Query: 126 FAAS----GKGLMLVTKVGAEVSKSGGDGRRRRR---SQWVVKVDKCTGEE 139
                   GKG+M VT+VGAEVSK+G DGRR RR   SQWVVKVDKCTGEE
Sbjct: 173 LTTHLLPIGKGVM-VTRVGAEVSKAGDDGRRMRRRGQSQWVVKVDKCTGEE 216

BLAST of Csor.00g132970 vs. ExPASy TrEMBL
Match: A0A6J1FT52 (uncharacterized protein LOC111447905 OS=Cucurbita moschata OX=3662 GN=LOC111447905 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.42e-11
Identity = 62/159 (38.99%), Postives = 78/159 (49.06%), Query Frame = 0

Query: 6   DHKILALAAASPTGPARQELSVVIPRHGDLRLSQEILGVESYHGNRVSSWGEDEKIEEN- 65
           DHKILALAAA   G     +  +IPR  DL  S+ ILG+E ++       GE EK+ +  
Sbjct: 53  DHKILALAAAG--GLTGGRVVCIIPRQEDLHPSRAILGLEPHYPIEFVV-GEAEKLLQTH 112

Query: 66  ------------------------SQRRHRRWWGLKRDGAKRSVWRGGPVGRRRIFAASG 125
                                   S+R+  R   +    A R    G   G R      G
Sbjct: 113 YREADFVLIDCNLDSHVAVIEGIGSRRKFERATVVVGFNAMRKRCGGWSGGWRTQLLPIG 172

Query: 126 KGLMLVTKVGAEVSKSGGDGRRRRRSQWVVKVDKCTGEE 139
           KG+M++ K+ AE+SKS GDGRRR   QWVVKVDKCTGEE
Sbjct: 173 KGVMVM-KLAAEISKSSGDGRRR---QWVVKVDKCTGEE 204

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6576783.13.65e-110100.00hypothetical protein SDJN03_24357, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023522325.19.32e-2550.30uncharacterized protein LOC111786241 [Cucurbita pepo subsp. pepo] >XP_023551838.... [more]
XP_022985506.12.61e-2450.92uncharacterized protein LOC111483494 [Cucurbita maxima][more]
KAG6576788.14.27e-2451.2240S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022922645.11.10e-2250.30uncharacterized protein LOC111430589 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A0A6J1J8E31.26e-2450.92uncharacterized protein LOC111483494 OS=Cucurbita maxima OX=3661 GN=LOC111483494... [more]
A0A6J1E9C95.34e-2350.30uncharacterized protein LOC111430589 OS=Cucurbita moschata OX=3662 GN=LOC1114305... [more]
A0A1S3AY083.22e-1239.77uncharacterized protein LOC103484000 OS=Cucumis melo OX=3656 GN=LOC103484000 PE=... [more]
A0A5D3DJF36.26e-1239.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1FT521.42e-1138.99uncharacterized protein LOC111447905 OS=Cucurbita moschata OX=3662 GN=LOC1114479... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g132970.m01Csor.00g132970.m01mRNA