Csor.00g131940 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g131940
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative
Location	Csor_Chr02: 549454 .. 549783 (+)
RNA-Seq Expression	Csor.00g131940
Synteny	Csor.00g131940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAATCTGGTTTCATTGCCGCTTCCGTCACCGCCGCCGCCGCCGCCGTCTCCGCTTCCCCTTCTTCCTCTACTCTGTTCTGCGACCCAAAAATTCAGTTCCCTCGTCAGGTAAGCCTTGATCCACAAATCGTCGATTAAAAGATCTCCTCTTGTTGAGTTTGACTCGTAAATTTCGGGTCTTTTTCGCGGTTTTTGAGATCTGGAGAGTTTAATTTGCAGGAGGAAAAGGAATTAGGAGAGAATTCTTCGTCTTCGGCGGATAAATTTGCTCCCAAATTTGATGGGTTGAGATTTATTGAAACTCTGGTGACGGCTCACAGATGA

mRNA sequence

ATGAAGAAATCTGGTTTCATTGCCGCTTCCGTCACCGCCGCCGCCGCCGCCGTCTCCGCTTCCCCTTCTTCCTCTACTCTGTTCTGCGACCCAAAAATTCAGTTCCCTCGTCAGGAGGAAAAGGAATTAGGAGAGAATTCTTCGTCTTCGGCGGATAAATTTGCTCCCAAATTTGATGGGTTGAGATTTATTGAAACTCTGGTGACGGCTCACAGATGA

Coding sequence (CDS)

ATGAAGAAATCTGGTTTCATTGCCGCTTCCGTCACCGCCGCCGCCGCCGCCGTCTCCGCTTCCCCTTCTTCCTCTACTCTGTTCTGCGACCCAAAAATTCAGTTCCCTCGTCAGGAGGAAAAGGAATTAGGAGAGAATTCTTCGTCTTCGGCGGATAAATTTGCTCCCAAATTTGATGGGTTGAGATTTATTGAAACTCTGGTGACGGCTCACAGATGA

Protein sequence

MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQFPRQEEKELGENSSSSADKFAPKFDGLRFIETLVTAHR

Homology

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BLAST of Csor.00g131940 vs. NCBI nr
Match: KAG6604795.1 (hypothetical protein SDJN03_02112, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (345), Expect = 1.44e-40
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQFPRQEEKELGENSSSSADKFAPKFDG 60
          MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQFPRQEEKELGENSSSSADKFAPKFDG
Sbjct: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQFPRQEEKELGENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of Csor.00g131940 vs. NCBI nr
Match: KAG7034915.1 (hypothetical protein SDJN02_01708, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135 bits (339), Expect = 1.19e-39
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQFPRQEEKELGENSSSSADKFAPKFDG 60
          MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQ PRQEEKELGENSSSSADKFAPKFDG
Sbjct: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of Csor.00g131940 vs. NCBI nr
Match: XP_022970726.1 (uncharacterized protein LOC111469626 [Cucurbita maxima])

HSP 1 Score: 131 bits (330), Expect = 2.81e-38
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQFPRQEEKELGENSSSSADKFAPKFDG 60
          MKKSGFIAAS+ AA+AAVSASPSSSTLFCDPKIQ PRQEEKELGENSSSSADKFAPKFDG
Sbjct: 1  MKKSGFIAASIAAASAAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of Csor.00g131940 vs. NCBI nr
Match: XP_023532108.1 (uncharacterized protein LOC111794370 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125 bits (313), Expect = 1.10e-35
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQFPRQEEKELGENSSSSADKFAPKFDG 60
          MKKSG IAAS+ AA+AAVSASPSSSTLFCDPKIQ P QEEKELG+NSSSSADKFAPKFDG
Sbjct: 1  MKKSGIIAASIAAASAAVSASPSSSTLFCDPKIQLPCQEEKELGQNSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of Csor.00g131940 vs. NCBI nr
Match: XP_038902353.1 (uncharacterized protein LOC120088987 [Benincasa hispida])

HSP 1 Score: 113 bits (283), Expect = 3.85e-31
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQFPRQEEKELGENSSSSADKFAPKFDG 60
          MKKSGFIAASV  AAAAVSASPSSSTL C+PK+QFPRQE KE GENSSSS DKFAPKFDG
Sbjct: 1  MKKSGFIAASV--AAAAVSASPSSSTLVCNPKVQFPRQEGKE-GENSSSSTDKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 69

[Close]

BLAST of Csor.00g131940 vs. ExPASy TrEMBL
Match: A0A6J1I1D6 (uncharacterized protein LOC111469626 OS=Cucurbita maxima OX=3661 GN=LOC111469626 PE=4 SV=1)

HSP 1 Score: 131 bits (330), Expect = 1.36e-38
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQFPRQEEKELGENSSSSADKFAPKFDG 60
          MKKSGFIAAS+ AA+AAVSASPSSSTLFCDPKIQ PRQEEKELGENSSSSADKFAPKFDG
Sbjct: 1  MKKSGFIAASIAAASAAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of Csor.00g131940 vs. ExPASy TrEMBL
Match: A0A6J1CHM8 (uncharacterized protein LOC111011258 OS=Momordica charantia OX=3673 GN=LOC111011258 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 3.27e-30
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQFPRQEEKELGENSSSSADKFAPKFDG 60
          MKKS FIAASV  A+AAVSASPSSST  C+PK+QFPRQE K + ENSSSSADKFAPKFDG
Sbjct: 1  MKKSAFIAASVAGASAAVSASPSSSTFVCNPKVQFPRQEGK-VEENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 71

[Close]

BLAST of Csor.00g131940 vs. ExPASy TrEMBL
Match: E0CTD2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.08e-18
Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQFPRQEE---KELGENS----SSSADK 60
          MKKSGF AASV AA+A   ++PSSS   C+ KIQ  R E    K++ ENS    SSSAD+
Sbjct: 1  MKKSGFFAASVAAASATAISAPSSSGFLCNSKIQLSRDEAVAGKDI-ENSESQRSSSADR 60

Query: 61 FAPKFDGLRFIETLVTAHR 72
          FAP+FDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of Csor.00g131940 vs. ExPASy TrEMBL
Match: A0A5N5FS08 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_039583 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.65e-17
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 1  MKKSGFIAASVTAAAA-AVSASPSSSTLFCDPKIQFPRQE--EKELGENSSSSADKFAPK 60
          MKK GF+AASV AA+A A+SA+ SSS+   D  ++F  QE  +K   E SS+S +KFAPK
Sbjct: 1  MKKPGFLAASVAAASATALSATSSSSSFVSDSTMRFSHQEAGDKRNQEKSSASTEKFAPK 60

Query: 61 FDGLRFIETLVTAHR 72
          FDGLRFIETLVTAHR
Sbjct: 61 FDGLRFIETLVTAHR 75

[Close]

BLAST of Csor.00g131940 vs. ExPASy TrEMBL
Match: A0A498HID0 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_031016 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.61e-17
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 1   MKKSGFIAASVTAAAA-AVSASPSSSTLFCDPKIQFPRQE--EKELGENSSSSADKFAPK 60
           MKK GF+AASV AA+A A+SA+ SSS+   D  ++F  QE   K   E SS+S DKFAPK
Sbjct: 40  MKKPGFLAASVAAASATALSATSSSSSFVSDSTMRFSHQEAGSKRNQEKSSASMDKFAPK 99

Query: 61  FDGLRFIETLVTAHR 72
           FDGLRFIETL+TAHR
Sbjct: 100 FDGLRFIETLITAHR 114

[Close]

BLAST of Csor.00g131940 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 7.0e-12
Identity = 41/80 (51.25%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 1  MKKSGFIAASVTAAAAAVSASPSS---STLFCDPKIQFPRQEEKE-----LGENSSSSAD 60
          MKK+G IAAS++ AA+A + S  S   S  F  P+    RQE KE      G +     +
Sbjct: 1  MKKTGIIAASISVAASATAISAGSTNTSVSFSSPESNLSRQEAKEKQRKKKGSSEDGGDE 60

Query: 61 KFAPKFDGLRFIETLVTAHR 73
          KFAP+FDGLRFIETLVTAHR
Sbjct: 61 KFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Csor.00g131940 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 2.9e-05
Identity = 33/72 (45.83%), Postives = 39/72 (54.17%), Query Frame = 0


Query: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQFPRQEEKELGENSSSSADKFAPKFDG 60
          MK S  + ASV A + A  A  SSS L        P    K      ++ +D F P+FDG
Sbjct: 1  MKVSSGVVASVIAVSTA--ALSSSSIL--------PPVSPKVWESRKTNGSDNFEPRFDG 60

Query: 61 LRFIETLVTAHR 73
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 62

The following BLAST results are available for this feature:

BLAST of Csor.00g131940 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g131940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604795.1	1.44e-40	100.00	hypothetical protein SDJN03_02112, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7034915.1	1.19e-39	98.61	hypothetical protein SDJN02_01708, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022970726.1	2.81e-38	94.44	uncharacterized protein LOC111469626 [Cucurbita maxima]	[more]
XP_023532108.1	1.10e-35	90.28	uncharacterized protein LOC111794370 [Cucurbita pepo subsp. pepo]	[more]
XP_038902353.1	3.85e-31	88.89	uncharacterized protein LOC120088987 [Benincasa hispida]	[more]

BLAST of Csor.00g131940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I1D6	1.36e-38	94.44	uncharacterized protein LOC111469626 OS=Cucurbita maxima OX=3661 GN=LOC111469626...	[more]
A0A6J1CHM8	3.27e-30	83.33	uncharacterized protein LOC111011258 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
E0CTD2	1.08e-18	63.29	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=...	[more]
A0A5N5FS08	1.65e-17	62.67	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
A0A498HID0	4.61e-17	62.67	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_031016 PE=4 SV=1	[more]

BLAST of Csor.00g131940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28290.1	7.0e-12	51.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G42110.1	2.9e-05	45.83	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g131940.m01	Csor.00g131940.m01	mRNA