Csor.00g131300 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g131300
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	high mobility group B protein 3-like
Location	Csor_Chr02: 815306 .. 817048 (-)
RNA-Seq Expression	Csor.00g131300
Synteny	Csor.00g131300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCTCTGAAGAACGCCGTCGTCACTCACAAGAAGCCTAACGCAGAGTAATCCTCTTCTTCTTGTTTTAGTTTTTTTTCTTTTTTTTCTTTTTTTTTGTCTTGAATAAGTTTTCACATTCTTTGTTTCGGTTTTCGATATAAGTTTCTTATCTTCTCCTGTACGATTAGTTTCTTTGATTCTGCAAGCTCTCCTCAGTTGCGATGTTATACTCTCTGTCTCTGTATATGTATGTTCTTGTGCTTTGTAGGTAATGTACGTCCATTTTTTTTCTTCTATTTTGTAATGTTTTGCCTCTTTGTATATTTGTAATTGAGATGAACTTCACCGCATGCGTTTGTTCTAAATCAGTTTTGTTAGTTTTGTTTTCCTACACGAGGTTTCTTCACTTCTTTGAATCTCAACTATTCCACTGATATTATGTCCTTATTCTGCTCGCAATCGTTGTTTCGGAATTAAATCAAATAACTGTTGTAACTCTTGTATTTTCCGTACGATTTGGCTCATTTGAATGTGCTCCTGATGTTTTTATGCAACTTGCCATCTCCTTTTCATGATGTGTGATTTTATTACTGATATACTGTCCGAAGGATGCTGAAAAAGAGGAAAGCTGAGATGAAATCCACGAAAAGCAACAAAGCCATGAAGAAAGACCAGAATGCTCCTAAACGTCCAGCCACAGCGTTCTTCATTTTCATGTAAGTATAATTTATGATTTGGCTCTAGTGCTAGATAGAATCTGCTTTATTTTGAAACCTTTCTTTACACTCTAGCTTACATTATATTTATTCGTTCTGATTTCGATTTCTTGTTTTGGCAAATGATAGGGAGGAATTTAGAAAGACGTTCAAGGAGAAGTTTCCTGATGCAAAAGCTGGTCCAGCTGTGAGATTTTATACTCTTGTTTTAGTTAGCATACCTTTCTATTTATTCCTCCACTTTTATTTAAATACGATCCAGTGGATGATCAGAAGACTTGTCGAGTACTTAGCCAGATTTGTGGCTATCTGTGTTTCGTTATTTTGCAGGTTGGTAAAGCTGGCGGTGAGAAATGGAAATCAATGTCTGATGCTGTAAGATTATGATCACTTATTTTCGGACTTTCATAGAAAAGTAGTTCGTGACTAAACAGTTATTGTGAGTAACTTTAAGAATAAATGATTTAGGAATAAGATTGGAAGCTAATTGTTCTACTTTAGTTAAAAGATTGTTAACGTTTTGCAATCTGTGTTGGCTTCGCTTAGCCATCAGAATTATCAACGATACAAGTTTGTGGTACTTGTTTTTCTTCCTCAGGAAAAAGCTCCTTATGCTGAAAAATCTTTGGGAAGGAAGGCAGAGTACGAGATAGCTCTTGAAGTATACAAGAAGAAACTCGTAACTGTTTTCTTTTCTCTCTCTCATTTCGTTCCTTCAGCTTCACTTTGTCCGAACATCACCAGGTTTCATTTATTATCTGTTTGTCCCTATCTCTCTTCTCTAAGATCTCATGGTTTTCAGAATTGCTCTGCGGCCGCTGAAGCTGAAGTTGAAATGTCAACAGAATCACAGAAATCAACCTCTGATGTCCGTGATGACGGAGAGCAAGAAGCTAGCTCTAGCTCTTAGGTATTTCTTTCTTCCTATCTATAGTTGTCATACACCAATGCACATGCATGCTATAGCACAGCCGTGTGCCATATCATCTTCCCTTTGTTCTTCTAGATGTTGATTTTGTCTTATACCGTTGCAAGCAGCTGA

mRNA sequence

ATGAGAGCTCTGAAGAACGCCGTCGTCACTCACAAGAAGCCTAACGCAGAGATGCTGAAAAAGAGGAAAGCTGAGATGAAATCCACGAAAAGCAACAAAGCCATGAAGAAAGACCAGAATGCTCCTAAACGTCCAGCCACAGCGTTCTTCATTTTCATGGAGGAATTTAGAAAGACGTTCAAGGAGAAGTTTCCTGATGCAAAAGCTGGTCCAGCTGTTGGTAAAGCTGGCGGTGAGAAATGGAAATCAATGTCTGATGCTGAAAAAGCTCCTTATGCTGAAAAATCTTTGGGAAGGAAGGCAGAGTACGAGATAGCTCTTGAAGTATACAAGAAGAAACTCGTAACTGTTTTCTTTTCTCTCTCTCATTTCGTTCCTTCAGCTTCACTTTGTCCGAACATCACCAGAATTGCTCTGCGGCCGCTGAAGCTGAAGTTGAAATGTCAACAGAATCACAGAAATCAACCTCTGATGTCCGTGATGACGGAGAGCAAGAAGCTAGCTCTAGCTCTTAGCTGA

Coding sequence (CDS)

ATGAGAGCTCTGAAGAACGCCGTCGTCACTCACAAGAAGCCTAACGCAGAGATGCTGAAAAAGAGGAAAGCTGAGATGAAATCCACGAAAAGCAACAAAGCCATGAAGAAAGACCAGAATGCTCCTAAACGTCCAGCCACAGCGTTCTTCATTTTCATGGAGGAATTTAGAAAGACGTTCAAGGAGAAGTTTCCTGATGCAAAAGCTGGTCCAGCTGTTGGTAAAGCTGGCGGTGAGAAATGGAAATCAATGTCTGATGCTGAAAAAGCTCCTTATGCTGAAAAATCTTTGGGAAGGAAGGCAGAGTACGAGATAGCTCTTGAAGTATACAAGAAGAAACTCGTAACTGTTTTCTTTTCTCTCTCTCATTTCGTTCCTTCAGCTTCACTTTGTCCGAACATCACCAGAATTGCTCTGCGGCCGCTGAAGCTGAAGTTGAAATGTCAACAGAATCACAGAAATCAACCTCTGATGTCCGTGATGACGGAGAGCAAGAAGCTAGCTCTAGCTCTTAGCTGA

Protein sequence

MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLVTVFFSLSHFVPSASLCPNITRIALRPLKLKLKCQQNHRNQPLMSVMTESKKLALALS

Homology

[Close]

BLAST of Csor.00g131300 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.6e-21
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 21  KRKAEMKSTKSN---------KAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP 80
           K KAE +STK +         K   KD N PKRP++AFF+FME+FR T+KE+ P  K+  
Sbjct: 5   KSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVA 64

Query: 81  AVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 115
           AVGKAGGEKWKS+SD+EKAPY  K+  RK EYE  ++ Y KKL
Sbjct: 65  AVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL 107

[Close]

BLAST of Csor.00g131300 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-20
Identity = 55/106 (51.89%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 9   VTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAK 68
           V  +K         K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ K
Sbjct: 20  VDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVK 79

Query: 69  AGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 115
           A  AVGKAGG+KWKSMS AEKAPY EK+  RKAEYE  ++ Y K L
Sbjct: 80  AVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL 125

[Close]

BLAST of Csor.00g131300 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-19
Identity = 56/102 (54.90%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 12  KKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP 71
           K  N   +KK+ A+ K TK  KA+ KD N PKRP +AFF+FME+FRKT+KEK P+ K+  
Sbjct: 9   KSDNKLAVKKQAADTKKTK--KAV-KDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVA 68

Query: 72  AVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKK 114
            VGKAGG+KWK ++ AEKAP+  K+  RK EYE  L+ Y KK
Sbjct: 69  VVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKK 107

[Close]

BLAST of Csor.00g131300 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.8e-19
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 19  LKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGG 78
           L   K   K     KA  KD N PKRPA+AFF+FME+FR+TFK++ P  K+   VGKA G
Sbjct: 15  LSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAG 74

Query: 79  EKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 115
           +KWKS+SD+EKAPY  K+  RK EYE  ++ Y KKL
Sbjct: 75  DKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKL 110

[Close]

BLAST of Csor.00g131300 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.1e-19
Identity = 53/91 (58.24%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 23  KAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWK 82
           KA   + K   A  KD N PKRP +AFF+FMEEFRK F ++ P+ KA  AVGKA G KWK
Sbjct: 27  KARKPAGKGKAA--KDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWK 86

Query: 83  SMSDAEKAPYAEKSLGRKAEYEIALEVYKKK 114
           +MSDAEKAPY  KS  RK EYE  +  Y KK
Sbjct: 87  TMSDAEKAPYVAKSEKRKVEYEKNMRAYNKK 115

[Close]

BLAST of Csor.00g131300 vs. NCBI nr
Match: KAG6604859.1 (High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327 bits (838), Expect = 1.44e-112
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60
           MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLVTVFFS 120
           KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLVTVFFS
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLVTVFFS 120

Query: 121 LSHFVPSASLCPNITRIALRPLKLKLKCQQNHRNQPLMSVMTESKKLALALS 172
           LSHFVPSASLCPNITRIALRPLKLKLKCQQNHRNQPLMSVMTESKKLALALS
Sbjct: 121 LSHFVPSASLCPNITRIALRPLKLKLKCQQNHRNQPLMSVMTESKKLALALS 172

[Close]

BLAST of Csor.00g131300 vs. NCBI nr
Match: KAG7034971.1 (High mobility group B protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221 bits (562), Expect = 8.01e-71
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60
           MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLVT 116
           KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLVT
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLVT 116

[Close]

BLAST of Csor.00g131300 vs. NCBI nr
Match: XP_022947100.1 (high mobility group B protein 3-like [Cucurbita moschata])

HSP 1 Score: 217 bits (553), Expect = 1.76e-69
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60
           MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 114
           KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 114

[Close]

BLAST of Csor.00g131300 vs. NCBI nr
Match: XP_022971125.1 (high mobility group B protein 3-like [Cucurbita maxima])

HSP 1 Score: 217 bits (553), Expect = 1.76e-69
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60
           MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 114
           KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 114

[Close]

BLAST of Csor.00g131300 vs. NCBI nr
Match: XP_023533147.1 (high mobility group B protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216 bits (549), Expect = 7.14e-69
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60
           MRALKNAVVTHKKPN EMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNVEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 114
           KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 114

[Close]

BLAST of Csor.00g131300 vs. ExPASy TrEMBL
Match: A0A6J1I4V5 (high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891 PE=3 SV=1)

HSP 1 Score: 217 bits (553), Expect = 8.51e-70
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60
           MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 114
           KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 114

[Close]

BLAST of Csor.00g131300 vs. ExPASy TrEMBL
Match: A0A6J1G5W3 (high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111451070 PE=3 SV=1)

HSP 1 Score: 217 bits (553), Expect = 8.51e-70
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60
           MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 114
           KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 114

[Close]

BLAST of Csor.00g131300 vs. ExPASy TrEMBL
Match: A0A6J1CIL2 (high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011298 PE=3 SV=1)

HSP 1 Score: 193 bits (490), Expect = 3.07e-60
Identity = 100/114 (87.72%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60
           MRA +NAV+  KKPNAEMLK+RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTF
Sbjct: 1   MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 114
           KEKFPDAKAGPAVGKAGGEKWKS+SDAEKAPYAEK+L RK EY IALE YKK L
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTL 114

[Close]

BLAST of Csor.00g131300 vs. ExPASy TrEMBL
Match: A0A1S3C2L9 (high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 179 bits (454), Expect = 8.84e-55
Identity = 95/111 (85.59%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60
           MRAL+NAVVTHKKPNA+ LK+RKAEMKSTKS K   KDQNAPKRPATAFF+FMEEFR  F
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKK---KDQNAPKRPATAFFVFMEEFRMMF 60

Query: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYK 111
           KE+FPDAKAGP VGKAGGEKWKSMSDAEKAPYAEK+L RKAEYEIALE YK
Sbjct: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYK 108

[Close]

BLAST of Csor.00g131300 vs. ExPASy TrEMBL
Match: A0A1S3C1W5 (HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 172 bits (435), Expect = 8.78e-52
Identity = 95/119 (79.83%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60
           MRAL+NAVVTHKKPNA+ LK+RKAEMKSTKS K   KDQNAPKRPATAFF+FMEEFR  F
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKK---KDQNAPKRPATAFFVFMEEFRMMF 60

Query: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDA--------EKAPYAEKSLGRKAEYEIALEVYK 111
           KE+FPDAKAGP VGKAGGEKWKSMSDA        EKAPYAEK+L RKAEYEIALE YK
Sbjct: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAVRLRFLILEKAPYAEKALKRKAEYEIALEAYK 116

[Close]

BLAST of Csor.00g131300 vs. TAIR 10
Match: AT1G20696.2 (high mobility group B3 )

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-22
Identity = 58/104 (55.77%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 21  KRKAEMKSTKSN---------KAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP 80
           K KAE +STK +         K   KD N PKRP++AFF+FME+FR T+KE+ P  K+  
Sbjct: 5   KSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVA 64

Query: 81  AVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLV 116
           AVGKAGGEKWKS+SD+EKAPY  K+  RK EYE  ++ Y KKLV
Sbjct: 65  AVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLV 108

[Close]

BLAST of Csor.00g131300 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 101.7 bits (252), Expect = 6.1e-22
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 21  KRKAEMKSTKSN---------KAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP 80
           K KAE +STK +         K   KD N PKRP++AFF+FME+FR T+KE+ P  K+  
Sbjct: 5   KSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVA 64

Query: 81  AVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 115
           AVGKAGGEKWKS+SD+EKAPY  K+  RK EYE  ++ Y KKL
Sbjct: 65  AVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL 107

[Close]

BLAST of Csor.00g131300 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 101.7 bits (252), Expect = 6.1e-22
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 21  KRKAEMKSTKSN---------KAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP 80
           K KAE +STK +         K   KD N PKRP++AFF+FME+FR T+KE+ P  K+  
Sbjct: 5   KSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVA 64

Query: 81  AVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 115
           AVGKAGGEKWKS+SD+EKAPY  K+  RK EYE  ++ Y KKL
Sbjct: 65  AVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL 107

[Close]

BLAST of Csor.00g131300 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-21
Identity = 55/106 (51.89%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 9   VTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAK 68
           V  +K         K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ K
Sbjct: 20  VDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVK 79

Query: 69  AGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 115
           A  AVGKAGG+KWKSMS AEKAPY EK+  RKAEYE  ++ Y K L
Sbjct: 80  AVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL 125

[Close]

BLAST of Csor.00g131300 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-21
Identity = 55/106 (51.89%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 9   VTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAK 68
           V  +K         K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ K
Sbjct: 20  VDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVK 79

Query: 69  AGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL 115
           A  AVGKAGG+KWKSMS AEKAPY EK+  RKAEYE  ++ Y K L
Sbjct: 80  AVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL 125

The following BLAST results are available for this feature:

BLAST of Csor.00g131300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93047	8.6e-21	55.34	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49595	1.5e-20	51.89	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P40619	1.2e-19	54.90	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
O49596	2.8e-19	54.17	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P26585	8.1e-19	58.24	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of Csor.00g131300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604859.1	1.44e-112	100.00	High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7034971.1	8.01e-71	100.00	High mobility group B protein 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022947100.1	1.76e-69	100.00	high mobility group B protein 3-like [Cucurbita moschata]	[more]
XP_022971125.1	1.76e-69	100.00	high mobility group B protein 3-like [Cucurbita maxima]	[more]
XP_023533147.1	7.14e-69	99.12	high mobility group B protein 3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g131300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I4V5	8.51e-70	100.00	high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891...	[more]
A0A6J1G5W3	8.51e-70	100.00	high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]
A0A6J1CIL2	3.07e-60	87.72	high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A1S3C2L9	8.84e-55	85.59	high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C1W5	8.78e-52	79.83	HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1	[more]

BLAST of Csor.00g131300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.2	2.1e-22	55.77	high mobility group B3	[more]
AT1G20696.1	6.1e-22	55.34	high mobility group B3	[more]
AT1G20696.3	6.1e-22	55.34	high mobility group B3	[more]
AT3G51880.1	1.0e-21	51.89	high mobility group B1	[more]
AT3G51880.2	1.0e-21	51.89	high mobility group B1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 41..112 e-value: 7.2E-21 score: 85.3
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 42..111 e-value: 7.5E-19 score: 67.9
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 42..111 score: 17.156971
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 37..114 e-value: 4.0E-22 score: 80.5
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 33..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..40
None	No IPR available	PANTHER	PTHR46261:SF10	HIGH MOBILITY GROUP B PROTEIN 3-LIKE	coord: 1..116
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 42..108 e-value: 1.27102E-15 score: 65.7269
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g131300.m01	Csor.00g131300.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin