Csor.00g130960 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g130960
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2
LocationCsor_Chr02: 968751 .. 971145 (+)
RNA-Seq ExpressionCsor.00g130960
SyntenyCsor.00g130960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCAATTGGCGCTAGATCCGTTTTCCGATCACTTTCCGGCTCTGCTCGCCGTGCTGCTGCTCACATTGGTTCTCAAGCCCGTTCATCGTCAGGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGCGTTGACTAAATGCTCTTGCGTCCATGAAAAGCGCGAAAAGATTCCGAGTCAATAGTTGTTTGAGTTTTTTTCTTTTCCTTCTCTTTCTCCAATTGGAGAAATGTTTCAATTAATATGTATGGTGATGTATTTGGCTTATGAAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATAATGCCGTTTCACTCTGCGTCGTCCGCAGCTTTGATGATTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGGTGCGCTAACTGATAATTTAGTTCTCAACTTTCTTGATCTGTCATGAGCTAGGTCGATATAGGAAAGGACTATATAATAATTTTGTACAGCTTGTAAGTGATAATTTACTGGAATTTCAGCTTAATAATTATTCTCAAGAATCAAGAAAGGAAGTTGTAGTTCGAGTGGGGGTACTGATCAATTATATTTAGAAGTACTGATATCTGTATTACAGTTTAGTGGATACATTAGCCCCCATTAACCGCATGCTTCTGGAGGAAGAAAGATCCATGCTACTATTCTTTGATTAAATTTGCTAACGTCTATGAACCATCAGGAGCTACACCATGAAAATATTTCCTATGGGTTAAATTTAGTGCCAATACGGGTTATCATGCCAAGTAGCTTGTAATTGTTCATAAGAATTTCCTGCGTACATAAAGTTGGATCTGTTAACTCTAGTGATATGATATCTCTTCATGAGCATTTCTTACTATTAACTTGTAAACATAGATTCTTTATCCCACTCCGTAATTTTCTTGATTTTATGTTTTGAAAGCAGAAGTGGATCTTCTTCTAGGTTGTCTAACTAGTGGATTTTTTTACTCTTGAATTAGGTAGCTAGCACACTTTATAGGCCCATTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGTGAGTTGGTGCCCATGAACTTGTATAAAACAGATACAATTGAACGGAATTATATAATAACATGCATGCATAATAAGTTGATCAGTTTTTCCTCCTAGTGGACAGTTTATGACATCAAGTGGCTATCTCAAATTAAGATGCAAACGAGCTTAACAGACAATAATGTTTCGATCTCTCTTTTCTTCGCCCTTCATGGCCCGTACTTGGATCAGATTTAAGACCTAAACCTTCTCTTTGTAGTTTTTTTTTTTTTTTTTTATCTTACTAGAATAGGTCATTTATGAGAAAACCTTCCATTCTTTATTCAAACAGTTAATTAAAAAACTACATTCCCCTGTTTTATATGTAGGCAAAGACAAGACTAGATGAGGATCGGGAAGCAGGAAGGAATGACTTGAGTTGTTTTTTGAGTTTCACCTTTTAAGTCCTAGGCGTTGCATACCCCCCTGCCCCGCCCTTCAGACAAAAAAGAATAAAAAAACCATAGGCGATGATATCATCAATAGGTTAGATGAGATTATTGTATTTGGAATGAAGTAATAAACTGTGGTATTCTATTCAGTTCTTTGTATTTGTAGATTGTTGTCTTTTGAAGTGTTATGGATTATATATACAATTTAATTCTGCAACTATATGGGGTTACAGATTACTAGATCCTTGCCGAATAAATTTTGCTTCTAAATAGCTTATTGTTTGCTGTTTTGCAAAATTTACTTTGATCTCAAGTATTTGGTGCACTACTTCATATAGATGGGGGTGGCAAACTCAATTATATTACTCTGACCATCAAGTACCATGGAAATCGGAGTGAAACCAGGGATATAAAGAACATAGGCTAGATAACAAGTAAATCCTTTGCTTTGGACATAAAAAGTATCAACATTTTGGGGGGCTAGAGCCCCATCGCAAGGTCTGACACGACTCAGAAAGCACTTGAACATTATCAATTTTGTAAGCCTACTTGGGTATTGAGTATTTATATGTAAGAACGGAACTCCGTGCAATGGATAATTATAACTTCGGAAAACATAATCTACTATGCTCACTTTTTTCTTACATTTAATCAATCATTTATTTTATATATGCTTGGATATGGATAAGATGATTTACTTGATGGGCAAGGTCTCTGGTTCAAGTCTAGGATGGCCGAGTTGTCTAATTAAAAATGGAGTTATCCTCTTTACTAGTCTTGAGCTCTTGAAGTCGATAGATAGTTATCAATGTCACCAAACAAGAAGTTTGCTGTTAAATATTTCTAGTTCTTGCTGTCTGACTGTCCTTTGTTTTGTGTTCTAGGGCGGTGATATTCAATCAGCTTGTCTAA

mRNA sequence

ATGGCCTCAATTGGCGCTAGATCCGTTTTCCGATCACTTTCCGGCTCTGCTCGCCGTGCTGCTGCTCACATTGGTTCTCAAGCCCGTTCATCGTCAGGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTCTGCGGTTGGCTTCCCGAAGGTAGCTAGCACACTTTATAGGCCCATTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGGCGGTGATATTCAATCAGCTTGTCTAA

Coding sequence (CDS)

ATGGCCTCAATTGGCGCTAGATCCGTTTTCCGATCACTTTCCGGCTCTGCTCGCCGTGCTGCTGCTCACATTGGTTCTCAAGCCCGTTCATCGTCAGGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTCTGCGGTTGGCTTCCCGAAGGTAGCTAGCACACTTTATAGGCCCATTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGGCGGTGATATTCAATCAGCTTGTCTAA

Protein sequence

MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFSAVGFPKVASTLYRPIDVLLAFLLLWAVIFNQLV
Homology
[Close]
BLAST of Csor.00g130960 vs. NCBI nr
Match: KAG6604892.1 (hypothetical protein SDJN03_02209, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166 bits (419), Expect = 2.84e-51
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFSAV 60
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFSAV
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFSAV 60

Query: 61 GFPKVASTLYRPIDVLLAFLLLWAVIFNQLV 91
          GFPKVASTLYRPIDVLLAFLLLWAVIFNQLV
Sbjct: 61 GFPKVASTLYRPIDVLLAFLLLWAVIFNQLV 91

[Close]
BLAST of Csor.00g130960 vs. NCBI nr
Match: XP_022947068.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata] >XP_023534318.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103 bits (258), Expect = 1.03e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57

[Close]
BLAST of Csor.00g130960 vs. NCBI nr
Match: XP_023534316.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103 bits (258), Expect = 1.15e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57

[Close]
BLAST of Csor.00g130960 vs. NCBI nr
Match: XP_022947067.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 103 bits (258), Expect = 1.15e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57

[Close]
BLAST of Csor.00g130960 vs. NCBI nr
Match: KAG7026975.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103 bits (258), Expect = 1.49e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57

[Close]
BLAST of Csor.00g130960 vs. ExPASy TrEMBL
Match: A0A6J1G5L1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451052 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 4.97e-27
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57

[Close]
BLAST of Csor.00g130960 vs. ExPASy TrEMBL
Match: A0A6J1G5E8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451052 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 5.56e-27
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57
          MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57

[Close]
BLAST of Csor.00g130960 vs. ExPASy TrEMBL
Match: A0A6J1I155 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1)

HSP 1 Score: 102 bits (254), Expect = 2.02e-26
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57
          MASIGARSVFRS SGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57

[Close]
BLAST of Csor.00g130960 vs. ExPASy TrEMBL
Match: A0A6J1I2H5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1)

HSP 1 Score: 102 bits (254), Expect = 2.26e-26
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57
          MASIGARSVFRS SGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF 57

[Close]
BLAST of Csor.00g130960 vs. ExPASy TrEMBL
Match: A0A0A0LN06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408390 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.50e-23
Identity = 54/71 (76.06%), Postives = 59/71 (83.10%), Query Frame = 0 

Query: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSF--- 60
          MASIGARS FRS SGSARRAAAHIGSQ ++SS SPFRMATNKPLSHRTFRCA EMSF   
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SAVGFPKVAST 68
          S + F  V+S+
Sbjct: 61 SMMPFHSVSSS 71

The following BLAST results are available for this feature:
BLAST of Csor.00g130960 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g130960 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6604892.12.84e-51100.00hypothetical protein SDJN03_02209, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022947068.11.03e-26100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
XP_023534316.11.15e-26100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_022947067.11.15e-26100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
KAG7026975.11.49e-26100.00Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita argyr... [more]
BLAST of Csor.00g130960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G5L14.97e-27100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A6J1G5E85.56e-27100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A6J1I1552.02e-2698.25protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A6J1I2H52.26e-2698.25protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A0A0LN064.50e-2376.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408390 PE=4 SV=1[more]
BLAST of Csor.00g130960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g130960.m01Csor.00g130960.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000741 karyogamy