Csor.00g130860 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g130860
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Thymidine kinase
Location	Csor_Chr02: 1014008 .. 1015337 (+)
RNA-Seq Expression	Csor.00g130860
Synteny	Csor.00g130860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATAAATGTGGTGATGATCAAGTTAAGGACACAAGGTACGCTTGTCTCCCTTGTATAGTGGATTTTTGTGTTCAATTTGTTTACGATGAACAGAAATGTGGTGATGATCTAAGTTAAGGACACAAGGTAAGCCGTTGATGAGCAGAAATTTACATGCTGATCGTCTTTCCCACATAAGTTTGGAAGTTTGGAGAGGATGCTTTCGTTAAGGTATCTTGTTTGAACAATCAATTCTTTGGCATCGTTTTGTTTGGAGTTTTTTTTTTTCTGTTTTCTAACCCATCTTCATGCTCCCGGCAGCTTGATTGACTCACTTTTTCTCTGATCTCTATGATTTTTGCTACAATGTTGCTGATAAAGATGGCAAGATCATTATTGTTGCTGGCCTAGATGGAGATTACTTAAAAAACGTTGTTCTTAAAGTTGTTTTATGTTTTTCCATCGACAGGAAGAGGTTTGTGTGAGATCCCCATAAGTTGGAGAGGGAAAGGAAAAGGGAGTATTCGTTCTAAGGTATGAAAACCTCTCTCTAGCAAATACCTTTTAAAAACCTCGAAGAGGAGTCCGAAAAGGAAAGCCCAAAGAGGACGCTGGCCCCCAAGAGAGTGAATTGTGAGATCCTACCTTGGTTGGAGGGGAGAACGAAACATTCCTCATAAGGGTGTGAAAACATGTTTTACAAACCTTGAGGGGAAGTCTATAAGGGAAATCCCAAAGAGAGCGTTGGCCCTCAAGAAGGTGGTTAGTGAAATCCCACATCGGTTGGAGAGGAGAACGAAACATTTCTTATAAAGGTGTGAAGACCTCTCTAGCATACACGTTTTGAAAACCTTGAGGGGAAATCCGGAAGAAAACGTCCGAAAAGGACGCTGAGCCCCCAAGGGGGTAGACTATGAGATCTCATATCAATTAGAGAGAAGAACGAAGCATTCCTTATAAGAGTGCAGAAACCTCTCTCTAGCAGACGCATTTTAAAACCGTAAAGCTAACGACGATACGTAACAGACCAATCAGACAATATTTGCTAGTGATGGAATTGACCCGTTAGAGTTTAGAGTTTGGTTCAGAACGATCTTATACCCTTGGCTGACACAGTAACAAAGTTGACAGCCAGATGTGAACTTTGTGGTAAAAGAGGCTTCTTTACCTTAAGAAAGACAGAGGAGACAAGAACCGAGCTTACCGCCGGGGCTGATGTCTACATGCTGGTGTGCCGCCAGCTCTATGCCAATGGACAAGAAGTTATACAATCTTCCAAGAACGTCCTGGGATCTCGTGCTATTAGAACTGGCTCAAATCTAGAGGCACTTCTTTCCCTTATCTAA

mRNA sequence

ATGAACATAAATGTGGTGATGATCAAGTTAAGGACACAAGTAACAAAGTTGACAGCCAGATGTGAACTTTGTGGTAAAAGAGGCTTCTTTACCTTAAGAAAGACAGAGGAGACAAGAACCGAGCTTACCGCCGGGGCTGATGTCTACATGCTGGTGTGCCGCCAGCTCTATGCCAATGGACAAGAAGTTATACAATCTTCCAAGAACGTCCTGGGATCTCGTGCTATTAGAACTGGCTCAAATCTAGAGGCACTTCTTTCCCTTATCTAA

Coding sequence (CDS)

ATGAACATAAATGTGGTGATGATCAAGTTAAGGACACAAGTAACAAAGTTGACAGCCAGATGTGAACTTTGTGGTAAAAGAGGCTTCTTTACCTTAAGAAAGACAGAGGAGACAAGAACCGAGCTTACCGCCGGGGCTGATGTCTACATGCTGGTGTGCCGCCAGCTCTATGCCAATGGACAAGAAGTTATACAATCTTCCAAGAACGTCCTGGGATCTCGTGCTATTAGAACTGGCTCAAATCTAGAGGCACTTCTTTCCCTTATCTAA

Protein sequence

MNINVVMIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANGQEVIQSSKNVLGSRAIRTGSNLEALLSLI

Homology

[Close]

BLAST of Csor.00g130860 vs. ExPASy Swiss-Prot
Match: O81263 (Thymidine kinase OS=Oryza sativa subsp. japonica OX=39947 GN=TK PE=2 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-17
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 7   MIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANGQEVIQS 66
           +I L   VTKLTARCELCG+R FFTLRKT ET+TEL  GADVYM VCRQ Y +GQ VI++
Sbjct: 195 IIPLADSVTKLTARCELCGRRAFFTLRKTRETKTELIGGADVYMPVCRQHYLDGQIVIEA 254

Query: 67  SKNVL 72
           ++ VL
Sbjct: 255 TRIVL 259

[Close]

BLAST of Csor.00g130860 vs. ExPASy Swiss-Prot
Match: F4KBF5 (Thymidine kinase b OS=Arabidopsis thaliana OX=3702 GN=TK1B PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 7   MIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANGQEVIQS 66
           +I +   VTKLT+RCE+CGKR  FT+RKTEE  TEL  GA+VYM VCR  Y  GQ V+++
Sbjct: 205 LIPIADTVTKLTSRCEVCGKRALFTMRKTEEKETELIGGAEVYMPVCRSHYVCGQNVLET 264

Query: 67  SKNVLGS 74
           ++ VL S
Sbjct: 265 ARAVLDS 271

[Close]

BLAST of Csor.00g130860 vs. ExPASy Swiss-Prot
Match: Q9S750 (Thymidine kinase a OS=Arabidopsis thaliana OX=3702 GN=TK1A PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.1e-14
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 7   MIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANGQEVIQS 66
           +I +   VTKLTARCE+CG + FFTLRK  +TRTEL  GADVYM VCR+ Y     VI++
Sbjct: 158 IIPIADSVTKLTARCEVCGHKAFFTLRKNCDTRTELIGGADVYMPVCRKHYITNHIVIKA 217

Query: 67  SKNVL 72
           SK VL
Sbjct: 218 SKKVL 222

[Close]

BLAST of Csor.00g130860 vs. NCBI nr
Match: KAG6604903.1 (Thymidine kinase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172 bits (436), Expect = 6.27e-54
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MNINVVMIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANG 60
          MNINVVMIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANG
Sbjct: 1  MNINVVMIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANG 60

Query: 61 QEVIQSSKNVLGSRAIRTGSNLEALLSLI 89
          QEVIQSSKNVLGSRAIRTGSNLEALLSLI
Sbjct: 61 QEVIQSSKNVLGSRAIRTGSNLEALLSLI 89

[Close]

BLAST of Csor.00g130860 vs. NCBI nr
Match: XP_022985744.1 (thymidine kinase-like [Cucurbita maxima])

HSP 1 Score: 135 bits (341), Expect = 1.33e-37
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 7   MIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANGQEVIQS 66
           ++ L   VTKLTARCELCGKR FFTLRKTEETRTEL AGADVYM VCR  YANGQEVIQS
Sbjct: 152 VVPLADTVTKLTARCELCGKRAFFTLRKTEETRTELIAGADVYMPVCRHHYANGQEVIQS 211

Query: 67  SKNVLGSRAIRTGSNLEALLSLI 89
           SKN+LGSRA+RTGSNLEAL SLI
Sbjct: 212 SKNILGSRALRTGSNLEALPSLI 234

[Close]

BLAST of Csor.00g130860 vs. NCBI nr
Match: XP_038901065.1 (thymidine kinase isoform X1 [Benincasa hispida])

HSP 1 Score: 135 bits (341), Expect = 1.44e-37
Identity = 71/83 (85.54%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 7   MIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANGQEVIQS 66
           +I L   VTKLTARCELCGKR FFTLRKTEET TEL AGADVYM VCRQ YANGQEVIQS
Sbjct: 155 VIPLADTVTKLTARCELCGKRAFFTLRKTEETETELIAGADVYMPVCRQHYANGQEVIQS 214

Query: 67  SKNVLGSRAIRTGSNLEALLSLI 89
           SKNVLGSR IRTGSNLEAL SLI
Sbjct: 215 SKNVLGSRTIRTGSNLEALPSLI 237

[Close]

BLAST of Csor.00g130860 vs. NCBI nr
Match: KAG7010772.1 (Thymidine kinase a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135 bits (341), Expect = 1.44e-37
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 7   MIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANGQEVIQS 66
           ++ L   VTKLTARCELCGKR FFTLRKTEETRTEL AGADVYM VCR  YANGQEVIQS
Sbjct: 155 VVPLADTVTKLTARCELCGKRAFFTLRKTEETRTELIAGADVYMPVCRHHYANGQEVIQS 214

Query: 67  SKNVLGSRAIRTGSNLEALLSLI 89
           SKN+LGSRA+RTGSNLEAL SLI
Sbjct: 215 SKNILGSRALRTGSNLEALPSLI 237

[Close]

BLAST of Csor.00g130860 vs. NCBI nr
Match: XP_022943895.1 (thymidine kinase a [Cucurbita moschata])

HSP 1 Score: 135 bits (341), Expect = 1.44e-37
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 7   MIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANGQEVIQS 66
           ++ L   VTKLTARCELCGKR FFTLRKTEETRTEL AGADVYM VCR  YANGQEVIQS
Sbjct: 155 VVPLADTVTKLTARCELCGKRAFFTLRKTEETRTELIAGADVYMPVCRHHYANGQEVIQS 214

Query: 67  SKNVLGSRAIRTGSNLEALLSLI 89
           SKN+LGSRA+RTGSNLEAL SLI
Sbjct: 215 SKNILGSRALRTGSNLEALPSLI 237

[Close]

BLAST of Csor.00g130860 vs. ExPASy TrEMBL
Match: A0A6J1JE52 (Thymidine kinase OS=Cucurbita maxima OX=3661 GN=LOC111483705 PE=3 SV=1)

HSP 1 Score: 135 bits (341), Expect = 6.44e-38
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 7   MIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANGQEVIQS 66
           ++ L   VTKLTARCELCGKR FFTLRKTEETRTEL AGADVYM VCR  YANGQEVIQS
Sbjct: 152 VVPLADTVTKLTARCELCGKRAFFTLRKTEETRTELIAGADVYMPVCRHHYANGQEVIQS 211

Query: 67  SKNVLGSRAIRTGSNLEALLSLI 89
           SKN+LGSRA+RTGSNLEAL SLI
Sbjct: 212 SKNILGSRALRTGSNLEALPSLI 234

[Close]

BLAST of Csor.00g130860 vs. ExPASy TrEMBL
Match: A0A6J1FYC7 (Thymidine kinase OS=Cucurbita moschata OX=3662 GN=LOC111448484 PE=3 SV=1)

HSP 1 Score: 135 bits (341), Expect = 6.97e-38
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 7   MIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANGQEVIQS 66
           ++ L   VTKLTARCELCGKR FFTLRKTEETRTEL AGADVYM VCR  YANGQEVIQS
Sbjct: 155 VVPLADTVTKLTARCELCGKRAFFTLRKTEETRTELIAGADVYMPVCRHHYANGQEVIQS 214

Query: 67  SKNVLGSRAIRTGSNLEALLSLI 89
           SKN+LGSRA+RTGSNLEAL SLI
Sbjct: 215 SKNILGSRALRTGSNLEALPSLI 237

[Close]

BLAST of Csor.00g130860 vs. ExPASy TrEMBL
Match: A0A6J1CH59 (Thymidine kinase OS=Momordica charantia OX=3673 GN=LOC111011151 PE=3 SV=1)

HSP 1 Score: 131 bits (330), Expect = 3.17e-36
Identity = 66/82 (80.49%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 7   MIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANGQEVIQS 66
           ++ L   VTKLTARCELCGKR FFTLRKTEETRTEL AGADVYM VCRQ YANGQ+VIQ+
Sbjct: 155 VVPLADTVTKLTARCELCGKRAFFTLRKTEETRTELIAGADVYMPVCRQHYANGQQVIQA 214

Query: 67  SKNVLGSRAIRTGSNLEALLSL 88
           SKNVLGSR + TGSNLEAL SL
Sbjct: 215 SKNVLGSRTVTTGSNLEALASL 236

[Close]

BLAST of Csor.00g130860 vs. ExPASy TrEMBL
Match: A0A5D3CJB6 (Thymidine kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00640 PE=3 SV=1)

HSP 1 Score: 120 bits (300), Expect = 9.86e-32
Identity = 64/83 (77.11%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 7   MIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANGQEVIQS 66
           ++ L   VTKLTARCELCGKR FFTLRKTEET+TEL AGADVYM VCR  YA GQEVIQS
Sbjct: 155 VVPLADTVTKLTARCELCGKRAFFTLRKTEETKTELIAGADVYMPVCRHHYATGQEVIQS 214

Query: 67  SKNVLGSRAIRTGSNLEALLSLI 89
           SKNV+GSR I   SNLEAL SLI
Sbjct: 215 SKNVMGSRTI--ASNLEALPSLI 235

[Close]

BLAST of Csor.00g130860 vs. ExPASy TrEMBL
Match: A0A1S3CKW8 (Thymidine kinase OS=Cucumis melo OX=3656 GN=LOC103502126 PE=3 SV=1)

HSP 1 Score: 120 bits (300), Expect = 9.86e-32
Identity = 64/83 (77.11%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 7   MIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANGQEVIQS 66
           ++ L   VTKLTARCELCGKR FFTLRKTEET+TEL AGADVYM VCR  YA GQEVIQS
Sbjct: 155 VVPLADTVTKLTARCELCGKRAFFTLRKTEETKTELIAGADVYMPVCRHHYATGQEVIQS 214

Query: 67  SKNVLGSRAIRTGSNLEALLSLI 89
           SKNV+GSR I   SNLEAL SLI
Sbjct: 215 SKNVMGSRTI--ASNLEALPSLI 235

[Close]

BLAST of Csor.00g130860 vs. TAIR 10
Match: AT5G23070.1 (Thymidine kinase )

HSP 1 Score: 80.5 bits (197), Expect = 7.6e-16
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 7   MIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANGQEVIQS 66
           +I +   VTKLT+RCE+CGKR  FT+RKTEE  TEL  GA+VYM VCR  Y  GQ V+++
Sbjct: 205 LIPIADTVTKLTSRCEVCGKRALFTMRKTEEKETELIGGAEVYMPVCRSHYVCGQNVLET 264

Query: 67  SKNVLGS 74
           ++ VL S
Sbjct: 265 ARAVLDS 271

[Close]

BLAST of Csor.00g130860 vs. TAIR 10
Match: AT3G07800.1 (Thymidine kinase )

HSP 1 Score: 78.6 bits (192), Expect = 2.9e-15
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 7   MIKLRTQVTKLTARCELCGKRGFFTLRKTEETRTELTAGADVYMLVCRQLYANGQEVIQS 66
           +I +   VTKLTARCE+CG + FFTLRK  +TRTEL  GADVYM VCR+ Y     VI++
Sbjct: 158 IIPIADSVTKLTARCEVCGHKAFFTLRKNCDTRTELIGGADVYMPVCRKHYITNHIVIKA 217

Query: 67  SKNVL 72
           SK VL
Sbjct: 218 SKKVL 222

The following BLAST results are available for this feature:

BLAST of Csor.00g130860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81263	2.3e-17	67.69	Thymidine kinase OS=Oryza sativa subsp. japonica OX=39947 GN=TK PE=2 SV=2	[more]
F4KBF5	1.1e-14	56.72	Thymidine kinase b OS=Arabidopsis thaliana OX=3702 GN=TK1B PE=1 SV=1	[more]
Q9S750	4.1e-14	60.00	Thymidine kinase a OS=Arabidopsis thaliana OX=3702 GN=TK1A PE=1 SV=1	[more]

BLAST of Csor.00g130860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604903.1	6.27e-54	100.00	Thymidine kinase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022985744.1	1.33e-37	83.13	thymidine kinase-like [Cucurbita maxima]	[more]
XP_038901065.1	1.44e-37	85.54	thymidine kinase isoform X1 [Benincasa hispida]	[more]
KAG7010772.1	1.44e-37	83.13	Thymidine kinase a [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022943895.1	1.44e-37	83.13	thymidine kinase a [Cucurbita moschata]	[more]

BLAST of Csor.00g130860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JE52	6.44e-38	83.13	Thymidine kinase OS=Cucurbita maxima OX=3661 GN=LOC111483705 PE=3 SV=1	[more]
A0A6J1FYC7	6.97e-38	83.13	Thymidine kinase OS=Cucurbita moschata OX=3662 GN=LOC111448484 PE=3 SV=1	[more]
A0A6J1CH59	3.17e-36	80.49	Thymidine kinase OS=Momordica charantia OX=3673 GN=LOC111011151 PE=3 SV=1	[more]
A0A5D3CJB6	9.86e-32	77.11	Thymidine kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G006...	[more]
A0A1S3CKW8	9.86e-32	77.11	Thymidine kinase OS=Cucumis melo OX=3656 GN=LOC103502126 PE=3 SV=1	[more]

BLAST of Csor.00g130860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23070.1	7.6e-16	56.72	Thymidine kinase	[more]
AT3G07800.1	2.9e-15	60.00	Thymidine kinase	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001267	Thymidine kinase	PFAM	PF00265	TK	coord: 7..57 e-value: 2.6E-8 score: 33.9
IPR001267	Thymidine kinase	PANTHER	PTHR11441	THYMIDINE KINASE	coord: 7..79
None	No IPR available	GENE3D	3.30.60.20		coord: 18..59 e-value: 3.1E-10 score: 42.2
None	No IPR available	PANTHER	PTHR11441:SF8	THYMIDINE KINASE B	coord: 7..79
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 18..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g130860.m01	Csor.00g130860.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009157	deoxyribonucleoside monophosphate biosynthetic process
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0046104	thymidine metabolic process
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004797	thymidine kinase activity