Csor.00g129560 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g129560
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr02: 1736778 .. 1744084 (+)
RNA-Seq ExpressionCsor.00g129560
SyntenyCsor.00g129560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTAGGGTTTGAATTTATAGGGATTTCTGGAGGGAAAGAAGACGAGTTGCGGACCGGTAGTTGGCCATTGAAGGGCCCACCAAATGAAGAAATTAATGAAAGGGATTGGTATGTAGCTAATATATTATTAATTGAATGTACGTCCCATTATTTTATTATTAATTGATTTAATATTTGATACGACACACCGTGTTGGGACTTAGGATAGGCTGTCAACTCGATCGAAATAATTTTTTAAATAAAAGATATTGTTCGTGAAGAAATTATCGAACTTACTTTTGTCACGTTCAAAATTAATGTAAATTATGTTTTATATTACTCGAAATAATTTAATGTTTGATTTTATAATTGATTTTGATCGTGACATGAATGATTTTAATCCTTTCGAAATCGCTCTTGAATATGTCTCGGACTCGAGTTTAATTCAAAGTTTAGGTTAGGTTGGAAGGTGTGACGTGTGTTGTTATGGTGAAGTACAATGAATTTTATAATTAAAATTAGTTAGAAATTATTGTTATTAATATATTGTGTTAGGACTTGGGATAGGCTGTCAACTCGATTTAAATAATTTTTCGAATCAAATGTGTCGTATGGTGAGATCCCACATCGGTTAGATAATATCTGCTAGCATTGGCTTGGGCTGTTACAAATAGTGTATGTCAGCAGTAGATTGTGAGATCTCACGCGGATTAGAGAGAAGAATAAACCTTTCCTTTTAAGGAGGCCTCTCTCTAATAAGAGGCTAACGACGATACGTGACGGGTCAAAACAGACAATATTTGCTAGCAGTAGGCAGTGAAGGACAATATCCACTCTCTAACAATTGGCTGACGACGATACGTGACGGGCCAAAACGGACAATATCTGCTAGTAGTGGGCAGCGAAGGACAATATCTATTAGTAGTGGGCAATGAAGGACAATATCGGCTAGTAGTGGGCAGCGAAGGACAATATCTACTAGTAGTGGGTAGCGAAGGACAATTTCTACTAGTCGTGGGTAGTGAAGGACAATATCTATTAGTATTGCTAGTAGTCGACGATACGTGACGGGCCAAAACAGACAATAGCTACTAGTAGTGGGCAGTGAAGGACAATATTTGCTAGTATTGCTAGTAGTCGATGATACGTGACGGACCAAAACAGACAATATTTATTAGTAGTGGGCAGCGAAGGACGATATCTGCTAGTATTGCTAGTAGTCGACGATATGTGACAAGCCAAAACGGACAATATCTGCTAGTAGTGGACAGTGAAGGACAATATTTGCTAGTACTATTAGTAGTGGCCAGTGAAGAACAATATCTACTAGTACCGCTAGTAGTGGGCAGTGAAAGACAATCATTGCTAACGGTGGAGTGAAGGGTAGTGAAGGCCGGGTTTATATATATTAAAAAAATAATTAAGTTACTGTTTTTATGTACTATTTTTTTATAATTATTGAAAAATATGTTTTTTTAAATTTTAAATTTTAATTTTTAATTTTTTTTTTTTTTTTTTTGCAAGGGTAGATTATTGCACATGGCATGATTATATATATTTTTTATTTAAAAAAATCCAAACTTTGAAGGATGAAGAAAATTATGATATATGCATTAGCTAAGCTATGAATAAATAATTATTTTTAATACTAATAATTATTAGTTAATGGGAATATTTTAAAACTATTTCAGTATTAATGTCAATGTTAACCATATACATTGAATCATGAATGTGAATCAATCATATGCCTTCATTATTAAATACACATATAATTTGATTATTCAACTTTATACTTAATATATAATATAATTTCAAGACAATGTAACATTTATAAGTTTTGTTTCTTTAGCTATGGTCAAATCTTATATTAAAATTTTTCAAAATTTTGTTGACTTAGACATAGTTCAAATCGTTAAATATTATACATTTGTCTAAGCGTCACGCATATGACATTATATTGCCACAGTTGTGTTTTTTAAACCGTGCAACTTCGTGATTTTGACACGATCATGACTGTAACAGCCAAAACCCACTACTAGCAGATATTATCCACTTTGACCTGTTACGTAGTTCTATCAGCCTCACGATTCTAAAACGCGTCTACTAGGGGGAGGTTTTACGTAAGGAATACTTTATTCCTCTCTCCAACCGATATGAGATCTCACAATCCACTTCCTTAAGACCCAACATCCTCAATGACACCACCCCACCTCTCCCGTGTCTAGCTCTGATACCATTTGTAACAGCCCAAGCCCACTGCTAGCAAATATTGTCCGTTTTGGCTTATTACGTATCGTCGTTAGTCTCACAGTTTTAAAATGCATCTACTAAAGAGAGATTTTCACATAAAAAATGTTTTATTCCCGTCTCTAACCAATATAGGATCTCAGAGTAATTGGCCGAAAATTCAAGGCCATTGTGTTTTTTCTTTTATTTTACTTTTAGTACTTTCAAACATTAATTTTTTTTTATTTACTTTATAGAAATATATATATATATTCAATTTATTTATTTTTTTCTTTTCTATTCGTAATTTTTAATTTCTAAAAAGACGGTGGAGGATGAGACATTAAATAATTAAACTATTTTATTTTTTATTTTCTGTTTTAAATTTAAAAAATTAAGGTTGACCAATTTATTTATTTTTATTTTTTTCAAAATGGGATTTTAACGCGTCAATGGTGGTCTCCCCATTATTTTCCATTTTTATATTTGAAAATAAGATAATTAAAATAGAATATTCGACCAAAAACTGTATTTTGTGTTATATAAAAATCTATTAAAATTTCATATAAATAAATTATATTTTTGTTAAGTTATTAGTTTAACAGTTTAGTATTACTATTGGCTAAACTTTTATTAAGATAAATTATTAAAATAATTTTAACTAATTAAATTTTATTTTATCTTTAAGTATAATAATATGCATTAGATTTTTAATGTTATTTAATAATCAACATAAATAAATAATTTTAATAAAACTACATAAATTTTAATTGTAAATAATTATTACATAATAATTAATAAACATATTATATTTTAAAAATAAATATTAACGAGAGAACAAAAATAATAATAATTTTTTTTAGAAATAATAAATTTCAACTACTCTTGACTGGTCGTTAACCACTCCAGTCTAATAATTATATGAATTCATTATCTATATATTTAAAAATAATAATTTAAATATTTTAAAAATAATTTAGATAGAGTAAAAATAAAGATATTTAGATATTTTAAAAACACTATTTTAAAAATAAATCGTCCCGTCTTTGATCTAATAAATTTTGATCTCAAAAAATCATAAACAACATAATAATAAATGGTGTTATTTAATATCTATTAGGTATACAAATTATCGTATAATCCAAATCCGAACAGCTAAATCTCGAGCTAGGTAGCAAAATCATCACCATATGCGTTCAAATTTGATTCGATTCATTTCAAGATACCTGTACTCTGCAGCAACAAGCTCACATGCTACAATATGATCTACACAGTTCGAATTCATCATCAATTTGTACGTCGAACATCGCCGCGTCGCCGTTGTCTCCCAGATGCGACATGACATTGATCATCCATAACTTCCTGCCTCATTTCTAGACTGTAACGATCTATCCGAAGTAAAGGTATACAAAAGTTTGTACAGCGATTGTAATTTTTGAAATCGAGAACCGATTCGTACTTTCCTATGTATTAATGTCTGAGACTTGATGGATACCGAATACACAAACGCTATATTGAATTACAATTTACGTCTCAGTTTTCTGTTCTGATACGTTGGGGAATCATTATCTGCTTCTTGCAAGAGGGGGAAAATGTGTTGCTCCGATGAAGGACATTGAGTAAGTTTTACTTTGCTGATCGGTATTGTAAAATGATTGATTTCTTGATTGGATGTGGTTGATAGCGAATTTGTATTGCATGTTTTTTTTTGGTGAAAAGAACTAGGTTAAGATTTCTTGATTGGATGTAGTTGAATCTATTTCGGGCAGCTACCATACCAGATGGTATGGCTGGAATCTGGAGTGTTTTTGTGAGGGGAATATGTTGGATAAACACTTTGATAGTGATGGAATTCTTGCAGGAGAAGAGAGTTGTGTCTGTCACAACAGTGACAAACTCCTTATTTGATGCAGATCGATTTGATTTTCCCCACACAATTGTGTGGGGGTCTTGCAGATTTGTAGCGTAAAAAGGAAAGAAAGAAAGAAAACTTGGTTGGTTATGTTGAATTAGATAGAATGTAGGCACACAAAGAGAGAGTCATTTACATTTTACTTTCAATACGATGGAACCTATACTCTGATTTCTATAATTTTTCTAATTAGGGACAAAACTTTTCATTGAAGAAATGAAAGAGATTAAAGCTGAACTCCACAAGAGAGTGAAAGAAAAAGCAATAAAACCAATAAAACAATGATAAAAGTTACTAGGAGTAATAAAAACATTTGAATTGAAACATATATCCTGTAAAGAGAACCTATCAAAATGCTCTGAAAGAAAACTCCATAATGAAGCTTTTAAACAATTCGATTCAAATTGATCAATCTGAAAGAGATGTTTGCTTTAGAAATTAGAAATGAAAAACTAAAGTTGGAAAAACTGTGGTGAGAGGTTGATCTTTTCTCTCCATCTCTCACGATGTATGCAACCTAGAAGTTAGATCATTAAAAGGATCTTCTCTGTAGGGAATTGGCAGACCACCCGTTGGATGGAAGAATCCAAACTCTTCCTCAGACCTTTGTAGTAAGTTAATAAATGAAGGGTGGTTCTAGTAAGTAACTGGAACCGCAGATCTCTGTCTGGATTTCCACCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAAAAAACTGCAACTTCATCTTTGGGGATTATTAAACTTATTTTGGGTAGAAGCACTCAGTGTTTGAGAATTTGTTTGATGTTGCGAAGAATTGATGGCAAACAGATTCTCATATTCAATTTTGCTTGAGTTGAAAGCATAATGAGCAAATCTAGGTGGTAGCATGCTTGATATTGATTTGAACTAGGAAACTTCTATATACTTGGATGGGAATTTCTCTGTGATTTGAGTTGGGAGAGTGGTTGTTAATGGGTTTTGAATTATATATAGAGTGAGAAAGACTAGGTGAGAACGAAATAATATCAAAACAGGAGTCTGCTAGTCCTACTTTATCCAAGGATCTCGTGGACTTGCCAAATTGGTTGGAACATACTTTTTTTCTCATTTGGCCTGACTTCTGGTAGCAAAGACCCACTAGTTTGAGTGGAAGATAATAGAGTAGATAACAAGTGGTCTAGGAAAACAGAAAGCCAAAAGCTGTGACCAAGAATATAGATAGACCAAAAAGGAAAACCATTTGATGAGAAACTTTTGATCACTTGTTCCGCATCACTGGCCCAATGCATAGCTAACAAATTAGACCACCACGAAAGTACATTAGATACTCGACTATGTATCATAAATTTCCTTGGTTCTCATGTGGGCACTTCCAATCCTACCTAATTAACTCTTTCACTAGTAACAACATCACAACTTTACTGGTTTATATCCATTGATGCACCACCAAACAGGAATTTGCGTATCCTACTACATGAAATTATCTGCCCTAAGAAACAATTATATCTCGACCTACAAACACTGTACTCAACCTCAAGTGTTATTGAATCAAGCTTGCACAATTTTGATGTTATCACATTATGAGGTTAATCCAGAACTTGAGACTAGTAATTTTTCAAAAAAAATCATTAGCCATGGAAATGGACTTTCGGCATCTTAATTAATTGTTGAAGAAGAGGTGCTTGATTCATGCATAGTTTCTTATTGTTCTTAAAAGAATCTCATTTAATGTTCAAATACCCACTCATTTTAAGCAAACATTGTAGGTCAGTTTTCATGTGAACTTCACATAGGCTTGTTCCAAATAAAAAATAATAAAAAGGAAGAAGACATAATTCCACAATCATGTATATTTTTATCCACATATGTCTATAATCTAATCTCCTTGTAGTTTAGATTCATTCAATTTGTTTTGTGGGACTTCAAATAGCTGTATTTATATGTTGTGTCAAAGGCTTACCTTCCAAGTTTGGTTTTGTTCATGTCTTCAGCCGGATGGTTTATATTTTTTAATCAGATAAATCTTCAATTCATTTAGACCGAAAAAATTTGTGCCATTTAATGAGTTTTCTCCATGTTGTATGTTGGCATAGCACAAAATGAGGTGAATGGTTGAGATGTCCTAGATGTCTTAGGCATGTCTTTAACAAGAGTGATGGCTATCGCTTCCCTCTTGTTGTGACAATGGCTTACCTTCCAAGATTAGTTTTGTTCTTGTCTTCATCCAAGTGGTTTTGATTTTTTAATCAGATAAATCTTCAATTCATTTAGACAGAAAGGATCTATGCCATTTAATGAGTGTGCTCCTTGTTCTATGTTGGCATAGCACAAAATGAGGGGAATGGTTGAGATGTCTTGGATGTCTTAGGCATGTCCGTAACAAGAGTGATGACTATTGCTTAAGGTATGTGATTAACATAATAAACGAACTATCACCAAGCCACAATTTTCTACGCAAATGGGTCCTCCATGGGTTTTCGGTGACTGATATCTCAATATTAGTTCCCAAGTAGCTGAAGATTATTACCTAGACAGGATCATGCAATACAGTAGACTTCACAAGCACTTGCCTCCTAGTTGGCCCCATTCAAACATATCTAGCACTCATTTCTTAAAGCAAGCTATTACCCACATCACCCTTTTCAACTTACATACATGATTTTGAATCCCCATGCAACTTGCATCTCAAACTTTCAACCAGTCACCAAGCTTTCTCTCTAGCTGTTGTGCAACTTCAAGGTTTTTTCAATTAAAAATTATTCGAATTCCTCTTGTGGAGAACAAACCTGTGAGTTTTCATTTGGCGAAAATTGTAAATATTGTGCTAAGTCTTAGACTTTCTTCTCTAACAACAAACCACGGATCTTCAATAGTCTGGAAAGATTATTGTGCAGTTTACATCGGACAAAGTCAAGGGAGCAGTTTGTGATTCCAGTAGCTTACTGTAATCAACCATTTTTCAGGGACTTACTAAGTCGAGCCAAAGAAGAATTTGGCTACAGTCACCCTATGGGATGCTTCACTATTCCCTACATCGATGGTACATTCGTTGATCTCATCTCCCAATTGAATGAGTCCTGAAATAAGATGTATTTGTTAGACATGGCCTAATAAACTAGATAGTACCATTCTTATATATGCTCTTTTGTAGGTGGAGATAAAAGAAATGCCTCTCCCAATGATGTATAG

mRNA sequence

ATGGAGTTAGGGTTTGAATTTATAGGGATTTCTGGAGGGAAAGAAGACGAGTTGCGGACCGGTAGTTGGCCATTGAAGGGCCCACCAAATGAAGAAATTAATGAAAGGGATTGTAAAGTTTTCTGTTCTGATACGTTGGGGAATCATTATCTGCTTCTTGCAAGAGGGGGAAAATGTGTTGCTCCGATGAAGGACATTGAGGACTTACTAAGTCGAGCCAAAGAAGAATTTGGCTACAGTCACCCTATGGGATGCTTCACTATTCCCTACATCGATGGTGGAGATAAAAGAAATGCCTCTCCCAATGATGTATAG

Coding sequence (CDS)

ATGGAGTTAGGGTTTGAATTTATAGGGATTTCTGGAGGGAAAGAAGACGAGTTGCGGACCGGTAGTTGGCCATTGAAGGGCCCACCAAATGAAGAAATTAATGAAAGGGATTGTAAAGTTTTCTGTTCTGATACGTTGGGGAATCATTATCTGCTTCTTGCAAGAGGGGGAAAATGTGTTGCTCCGATGAAGGACATTGAGGACTTACTAAGTCGAGCCAAAGAAGAATTTGGCTACAGTCACCCTATGGGATGCTTCACTATTCCCTACATCGATGGTGGAGATAAAAGAAATGCCTCTCCCAATGATGTATAG

Protein sequence

MELGFEFIGISGGKEDELRTGSWPLKGPPNEEINERDCKVFCSDTLGNHYLLLARGGKCVAPMKDIEDLLSRAKEEFGYSHPMGCFTIPYIDGGDKRNASPNDV
Homology
[Close]
BLAST of Csor.00g129560 vs. NCBI nr
Match: KAG6605032.1 (hypothetical protein SDJN03_02349, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229 bits (583), Expect = 6.92e-76
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MELGFEFIGISGGKEDELRTGSWPLKGPPNEEINERDCKVFCSDTLGNHYLLLARGGKCV 60
           MELGFEFIGISGGKEDELRTGSWPLKGPPNEEINERDCKVFCSDTLGNHYLLLARGGKCV
Sbjct: 1   MELGFEFIGISGGKEDELRTGSWPLKGPPNEEINERDCKVFCSDTLGNHYLLLARGGKCV 60

Query: 61  APMKDIEDLLSRAKEEFGYSHPMGCFTIPYIDGGDKRNASPNDV 104
           APMKDIEDLLSRAKEEFGYSHPMGCFTIPYIDGGDKRNASPNDV
Sbjct: 61  APMKDIEDLLSRAKEEFGYSHPMGCFTIPYIDGGDKRNASPNDV 104

[Close]
BLAST of Csor.00g129560 vs. NCBI nr
Match: RIA05355.1 (hypothetical protein BRARA_K00328 [Brassica rapa])

HSP 1 Score: 47.0 bits (110), Expect = 5.32e-04
Identity = 30/96 (31.25%), Postives = 46/96 (47.92%), Query Frame = 0 

Query: 3  LGFEFIGISGGKEDELRTGSWPLKG----PPNEEINERDCKVFCSDTLGNHYLLLARGGK 62
          +G + IG+S  K+   R+ S  +      P    + +    V+  +T         R  +
Sbjct: 1  MGIQLIGLSNAKQKLQRSLSAKITSFLAMPGTNNVPKGHVAVYVGETY-------QRKKR 60

Query: 63 CVAPMKDI-----EDLLSRAKEEFGYSHPMGCFTIP 89
           V P+  +     +DLLS A+EEFG+ HPMGC TIP
Sbjct: 61 FVIPISCLNHPLFQDLLSLAEEEFGFDHPMGCLTIP 89

[Close]
BLAST of Csor.00g129560 vs. ExPASy TrEMBL
Match: A0A397L6C7 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_K00328 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.57e-04
Identity = 30/96 (31.25%), Postives = 46/96 (47.92%), Query Frame = 0 

Query: 3  LGFEFIGISGGKEDELRTGSWPLKG----PPNEEINERDCKVFCSDTLGNHYLLLARGGK 62
          +G + IG+S  K+   R+ S  +      P    + +    V+  +T         R  +
Sbjct: 1  MGIQLIGLSNAKQKLQRSLSAKITSFLAMPGTNNVPKGHVAVYVGETY-------QRKKR 60

Query: 63 CVAPMKDI-----EDLLSRAKEEFGYSHPMGCFTIP 89
           V P+  +     +DLLS A+EEFG+ HPMGC TIP
Sbjct: 61 FVIPISCLNHPLFQDLLSLAEEEFGFDHPMGCLTIP 89

[Close]
BLAST of Csor.00g129560 vs. ExPASy TrEMBL
Match: A0A218X6M7 (auxin-responsive protein SAUR21-like OS=Punica granatum OX=22663 GN=LOC116194508 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 8.78e-04
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 0 

Query: 58 KCVAPMKDI-----EDLLSRAKEEFGYSHPMGCFTIP 89
          KC+ P+  +     +DLLSRA+EEFGY+HPMG  TIP
Sbjct: 46 KCMVPISYLNQPLFQDLLSRAEEEFGYNHPMGGLTIP 82

The following BLAST results are available for this feature:
BLAST of Csor.00g129560 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g129560 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605032.16.92e-76100.00hypothetical protein SDJN03_02349, partial [Cucurbita argyrosperma subsp. sorori... [more]
RIA05355.15.32e-0431.25hypothetical protein BRARA_K00328 [Brassica rapa][more]
BLAST of Csor.00g129560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A397L6C72.57e-0431.25Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_K00328 PE=3 SV=1[more]
A0A218X6M78.78e-0456.76auxin-responsive protein SAUR21-like OS=Punica granatum OX=22663 GN=LOC116194508... [more]
BLAST of Csor.00g129560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g129560.m01Csor.00g129560.m01mRNA