Csor.00g129360 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g129360
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	riboflavin synthase-like
Location	Csor_Chr20: 999546 .. 1000340 (-)
RNA-Seq Expression	Csor.00g129360
Synteny	Csor.00g129360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCTCCCAGAAGGGATGCGATTCTCAATGTTCATCCGTCATCGTCCCAATTTTGCCCCAGGTTAGAACTCAATACGAATAGATCTCTTTTCACTCTATTCACCTCCTGCCGTAAGCCCCAATTGCGTTGCAAACCTCGGCCGAGGAGTTCGGTTCAATGCCTTTTCACTGGCATTGTTGAAGAAATAGGCCATGTCAAACAAGTGGGTATTGCTGAACATGGGGGTTTTGATTTGAAGATTACTGCCAAAACTGTTCTTGAAGGTGTAAACCTTGGAGATAGCATTTCTGTGAACGGAACTTGTCTTACTGTGACTGCTTTTGATCACCAACTGTCGGAATTCAAGGTGGGGTTAGCGCCTGAAACGCTTAGGAAAACTTCGTTGGTGGAACTCACGGCTGGTTCACCTGTGAATTTGGAGAGGGCGGTTCAACCAATCAGCCGAATGGGTGGGCATTTTGTGCAGGGGCATGTAGATGGGACTGGGGAGATAATCTCAATGGATCCTGAGGAGGATTCGCTGTGGATAAAGGTGAGGACGTCAGAGGCTTTGCTCAAGTACATTGTACCAAAAGGATTCATTGCAGTAGATGGGACTAGCTTGACTGTGGTGGATGTTTTTGATGAGGAGAAGGCTTTTAACTTCATGTTGGTTGCTTATACTCAAAAAAACGTTGTCATCCCATTGAAGAAAGTTGGGCAGTTGGTGAATTTGGAGGTAGATATTCTTGGCAAGTATGTGCAGAGGCTCCTCAGCAATGGTGCCATCAAGCCCATTGAGTCTCCATGA

mRNA sequence

ATGGTTCCTCCCAGAAGGGATGCGATTCTCAATGTTCATCCGTCATCGTCCCAATTTTGCCCCAGGTTAGAACTCAATACGAATAGATCTCTTTTCACTCTATTCACCTCCTGCCGTAAGCCCCAATTGCGTTGCAAACCTCGGCCGAGGAGTTCGGTTCAATGCCTTTTCACTGGCATTGTTGAAGAAATAGGCCATGTCAAACAAGTGGGTATTGCTGAACATGGGGGTTTTGATTTGAAGATTACTGCCAAAACTGTTCTTGAAGGTGTAAACCTTGGAGATAGCATTTCTGTGAACGGAACTTGTCTTACTGTGACTGCTTTTGATCACCAACTGTCGGAATTCAAGGTGGGGTTAGCGCCTGAAACGCTTAGGAAAACTTCGTTGGTGGAACTCACGGCTGGTTCACCTGTGAATTTGGAGAGGGCGGTTCAACCAATCAGCCGAATGGGTGGGCATTTTGTGCAGGGGCATGTAGATGGGACTGGGGAGATAATCTCAATGGATCCTGAGGAGGATTCGCTGTGGATAAAGGTGAGGACGTCAGAGGCTTTGCTCAAGTACATTGTACCAAAAGGATTCATTGCAGTAGATGGGACTAGCTTGACTGTGGTGGATGTTTTTGATGAGGAGAAGGCTTTTAACTTCATGTTGGTTGCTTATACTCAAAAAAACGTTGTCATCCCATTGAAGAAAGTTGGGCAGTTGGTGAATTTGGAGGTAGATATTCTTGGCAAGTATGTGCAGAGGCTCCTCAGCAATGGTGCCATCAAGCCCATTGAGTCTCCATGA

Coding sequence (CDS)

ATGGTTCCTCCCAGAAGGGATGCGATTCTCAATGTTCATCCGTCATCGTCCCAATTTTGCCCCAGGTTAGAACTCAATACGAATAGATCTCTTTTCACTCTATTCACCTCCTGCCGTAAGCCCCAATTGCGTTGCAAACCTCGGCCGAGGAGTTCGGTTCAATGCCTTTTCACTGGCATTGTTGAAGAAATAGGCCATGTCAAACAAGTGGGTATTGCTGAACATGGGGGTTTTGATTTGAAGATTACTGCCAAAACTGTTCTTGAAGGTGTAAACCTTGGAGATAGCATTTCTGTGAACGGAACTTGTCTTACTGTGACTGCTTTTGATCACCAACTGTCGGAATTCAAGGTGGGGTTAGCGCCTGAAACGCTTAGGAAAACTTCGTTGGTGGAACTCACGGCTGGTTCACCTGTGAATTTGGAGAGGGCGGTTCAACCAATCAGCCGAATGGGTGGGCATTTTGTGCAGGGGCATGTAGATGGGACTGGGGAGATAATCTCAATGGATCCTGAGGAGGATTCGCTGTGGATAAAGGTGAGGACGTCAGAGGCTTTGCTCAAGTACATTGTACCAAAAGGATTCATTGCAGTAGATGGGACTAGCTTGACTGTGGTGGATGTTTTTGATGAGGAGAAGGCTTTTAACTTCATGTTGGTTGCTTATACTCAAAAAAACGTTGTCATCCCATTGAAGAAAGTTGGGCAGTTGGTGAATTTGGAGGTAGATATTCTTGGCAAGTATGTGCAGAGGCTCCTCAGCAATGGTGCCATCAAGCCCATTGAGTCTCCATGA

Protein sequence

MVPPRRDAILNVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGIVEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGLAPETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKVRTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNLEVDILGKYVQRLLSNGAIKPIESP

Homology

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BLAST of Csor.00g129360 vs. ExPASy Swiss-Prot
Match: Q9Y7P0 (Riboflavin synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rib5 PE=1 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.8e-47
Identity = 101/199 (50.75%), Postives = 136/199 (68.34%), Query Frame = 0


Query: 56  LFTGIVEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSE 115
           +FTG+VE IG VK V      GF +KI A  +L+  + GDSI+VNGTCLTVT FD     
Sbjct: 1   MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFDRY--H 60

Query: 116 FKVGLAPETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDS 175
           F VG+APE+LR T+L +  AG PVNLERAV   +RMGGHFVQGHVD   EI+    + ++
Sbjct: 61  FTVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEA 120

Query: 176 LWIKVRTSEA-LLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKV 235
           +    R  +  +LKYIV KG+IA+DGTSLT+  V  ++  F+ M+++YTQ  V++  K V
Sbjct: 121 IDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHV--DDSTFSIMMISYTQSKVIMAKKNV 180

Query: 236 GQLVNLEVDILGKYVQRLL 254
           G LVN+EVD +GKY ++L+
Sbjct: 181 GDLVNVEVDQIGKYTEKLV 195

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BLAST of Csor.00g129360 vs. ExPASy Swiss-Prot
Match: P50854 (Riboflavin synthase OS=Actinobacillus pleuropneumoniae OX=715 GN=ribE PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.4e-46
Identity = 99/210 (47.14%), Postives = 139/210 (66.19%), Query Frame = 0


Query: 56  LFTGIVEEIGHVKQVGIAEHGGFD-LKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLS 115
           +FTGI+EE+G + Q  I + G F  + I A  VL+ V+LGD+I+VNG CLTVT+F    +
Sbjct: 1   MFTGIIEEVGKIAQ--IHKQGEFAVVTINATKVLQDVHLGDTIAVNGVCLTVTSFSS--N 60

Query: 116 EFKVGLAPETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEED 175
           +F   +  ETL++TSL EL + SPVNLERA+    R GGH V GH+DGTGEI  + P  +
Sbjct: 61  QFTADVMSETLKRTSLGELKSNSPVNLERAMAANGRFGGHIVSGHIDGTGEIAEITPAHN 120

Query: 176 SLWIKVRTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKV 235
           S W +++TS  L++YI+ KG I +DG SLTVVD  DE  +F   ++ +T K   +  KK+
Sbjct: 121 STWYRIKTSPKLMRYIIEKGSITIDGISLTVVDTDDE--SFRVSIIPHTIKETNLGSKKI 180

Query: 236 GQLVNLEVDILGKYVQRLLSNGAIKPIESP 265
           G +VNLE DI+GKY+++ L     KP + P
Sbjct: 181 GSIVNLENDIVGKYIEQFLLK---KPADEP 201

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BLAST of Csor.00g129360 vs. ExPASy Swiss-Prot
Match: A5DB51 (Riboflavin synthase OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=RIB5 PE=2 SV=3)

HSP 1 Score: 182.6 bits (462), Expect = 5.9e-45
Identity = 103/204 (50.49%), Postives = 132/204 (64.71%), Query Frame = 0


Query: 56  LFTGIVEEIGHVKQV---GIAEHGGFDLKIT---AKTVLEGVNLGDSISVNGTCLTVTAF 115
           +FTG+VE IG V QV        GG  + +       +LE V LGDSI  NG CLTVT F
Sbjct: 1   MFTGLVEHIGTVLQVTEKDTTASGGDGVSMVIGDCSKILEDVQLGDSICTNGVCLTVTEF 60

Query: 116 DHQLSEFKVGLAPETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISM 175
           D   S+FKVG++PETLR++ L EL  GS VNLERAV+   RMGGH VQGHVD    I++ 
Sbjct: 61  DMARSQFKVGISPETLRRSDLGELKPGSKVNLERAVKADVRMGGHVVQGHVDTIATIVNR 120

Query: 176 --DPEEDSLWIKVRTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNV 235
             D    +   K+R S+   KYIV KGFIA+DGTSLTV DV  E+  F+  +V+YTQ+ V
Sbjct: 121 RGDGNAINFTFKLRDSQ-YGKYIVEKGFIAIDGTSLTVTDVDHEQSEFSISMVSYTQEKV 180

Query: 236 VIPLKKVGQLVNLEVDILGKYVQR 252
           ++PLK  G  VN+EVD+ GK +++
Sbjct: 181 IMPLKNSGDSVNIEVDLTGKLIEK 203

[Close]

BLAST of Csor.00g129360 vs. ExPASy Swiss-Prot
Match: P38145 (Riboflavin synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RIB5 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.4e-40
Identity = 94/206 (45.63%), Postives = 135/206 (65.53%), Query Frame = 0


Query: 56  LFTGIVEEIGHVKQ---VGIAEHGGFDLKIT---AKTVLEGVNLGDSISVNGTCLTVTAF 115
           +FTGIVE +G V +      +E GG  + IT   A ++L   ++GDSI+VNG CLTVT F
Sbjct: 1   MFTGIVECMGTVLENNPYDDSESGGQGVSITIGNAGSILTDCHVGDSIAVNGVCLTVTEF 60

Query: 116 DHQLSEFKVGLAPETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISM 175
           ++    FKVG++PET++++++     G+ VNLERAV    R GGH+VQGHVD    I+S 
Sbjct: 61  NN--DSFKVGISPETIKRSNVASWIQGTQVNLERAVSQDVRFGGHYVQGHVDTVANIVSR 120

Query: 176 DPEEDSL--WIKVRTSEALLKYIVPKGFIAVDGTSLTV--VDVFDEEKAFNFMLVAYTQK 235
            PE +S+    ++R  E   KYIV KGFI +DGTSLT+  VD   +  AF   ++ +TQ 
Sbjct: 121 RPEGNSIIFGFQLRDQE-YFKYIVEKGFICIDGTSLTIIKVDPLSQGGAFYISMIKHTQD 180

Query: 236 NVVIPLKKVGQLVNLEVDILGKYVQR 252
           NV++PLKK+G  VN+EVD+ GK +++
Sbjct: 181 NVIMPLKKIGDEVNIEVDLTGKIIEK 203

[Close]

BLAST of Csor.00g129360 vs. ExPASy Swiss-Prot
Match: P16440 (Riboflavin synthase OS=Bacillus subtilis (strain 168) OX=224308 GN=ribE PE=1 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 1.6e-37
Identity = 86/198 (43.43%), Postives = 122/198 (61.62%), Query Frame = 0


Query: 56  LFTGIVEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSE 115
           +FTGI+EE G ++ +  A H    L I    +LE V+LGDSI+VNG CLTVT  D   ++
Sbjct: 1   MFTGIIEETGTIESMKKAGH-AMALTIKCSKILEDVHLGDSIAVNGICLTVT--DFTKNQ 60

Query: 116 FKVGLAPETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDS 175
           F V + PET++ TSL +LT GS VNLERA+    R GGHFV GHVDGT EI  ++ + ++
Sbjct: 61  FTVDVMPETVKATSLNDLTKGSKVNLERAMAANGRFGGHFVSGHVDGTAEITRIEEKSNA 120

Query: 176 LWIKVRTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVG 235
           ++  ++   +L K +V KG I VDG SLT+  +   E      L+ +T    +   K +G
Sbjct: 121 VYYDLKMDPSLTKTLVLKGSITVDGVSLTIFGL--TEDTVTISLIPHTISETIFSEKTIG 180

Query: 236 QLVNLEVDILGKYVQRLL 254
             VN+E D++GKY+ R L
Sbjct: 181 SKVNIECDMIGKYMYRFL 193

[Close]

BLAST of Csor.00g129360 vs. NCBI nr
Match: KAG6570512.1 (hypothetical protein SDJN03_29427, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 522 bits (1344), Expect = 1.18e-186
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MVPPRRDAILNVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI 60
           MVPPRRDAILNVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI
Sbjct: 1   MVPPRRDAILNVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI 60

Query: 61  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 120
           VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL
Sbjct: 61  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 120

Query: 121 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV 180
           APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV
Sbjct: 121 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV 180

Query: 181 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL 240
           RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL
Sbjct: 181 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL 240

Query: 241 EVDILGKYVQRLLSNGAIKPIESP 264
           EVDILGKYVQRLLSNGAIKPIESP
Sbjct: 241 EVDILGKYVQRLLSNGAIKPIESP 264

[Close]

BLAST of Csor.00g129360 vs. NCBI nr
Match: KAG7010374.1 (rib5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 522 bits (1344), Expect = 2.28e-186
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MVPPRRDAILNVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI 60
           MVPPRRDAILNVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI
Sbjct: 19  MVPPRRDAILNVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI 78

Query: 61  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 120
           VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL
Sbjct: 79  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 138

Query: 121 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV 180
           APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV
Sbjct: 139 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV 198

Query: 181 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL 240
           RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL
Sbjct: 199 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL 258

Query: 241 EVDILGKYVQRLLSNGAIKPIESP 264
           EVDILGKYVQRLLSNGAIKPIESP
Sbjct: 259 EVDILGKYVQRLLSNGAIKPIESP 282

[Close]

BLAST of Csor.00g129360 vs. NCBI nr
Match: XP_023513296.1 (riboflavin synthase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 515 bits (1326), Expect = 1.27e-183
Identity = 261/264 (98.86%), Postives = 261/264 (98.86%), Query Frame = 0


Query: 1   MVPPRRDAILNVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI 60
           MVPPRRDAILNVHPSSSQFCPR ELN NRSLFTLFTSCRKPQLRCKPR RSSVQCLFTGI
Sbjct: 19  MVPPRRDAILNVHPSSSQFCPRFELNMNRSLFTLFTSCRKPQLRCKPRQRSSVQCLFTGI 78

Query: 61  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 120
           VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL
Sbjct: 79  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 138

Query: 121 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV 180
           APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV
Sbjct: 139 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV 198

Query: 181 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL 240
           RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL
Sbjct: 199 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL 258

Query: 241 EVDILGKYVQRLLSNGAIKPIESP 264
           EVDILGKYVQRLLSNGAIKPIESP
Sbjct: 259 EVDILGKYVQRLLSNGAIKPIESP 282

[Close]

BLAST of Csor.00g129360 vs. NCBI nr
Match: XP_022986014.1 (riboflavin synthase-like [Cucurbita maxima])

HSP 1 Score: 513 bits (1321), Expect = 7.32e-183
Identity = 260/263 (98.86%), Postives = 260/263 (98.86%), Query Frame = 0


Query: 1   MVPPRRDAILNVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI 60
           MVPPRRDAILNVHPSSSQFCPR ELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI
Sbjct: 19  MVPPRRDAILNVHPSSSQFCPRFELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI 78

Query: 61  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 120
           VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL
Sbjct: 79  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 138

Query: 121 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV 180
           APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPE DSLWIKV
Sbjct: 139 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEGDSLWIKV 198

Query: 181 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL 240
           RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLK VGQLVNL
Sbjct: 199 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKNVGQLVNL 258

Query: 241 EVDILGKYVQRLLSNGAIKPIES 263
           EVDILGKYVQRLLSNGAIKPIES
Sbjct: 259 EVDILGKYVQRLLSNGAIKPIES 281

[Close]

BLAST of Csor.00g129360 vs. NCBI nr
Match: XP_022943374.1 (riboflavin synthase-like [Cucurbita moschata])

HSP 1 Score: 511 bits (1317), Expect = 2.98e-182
Identity = 259/264 (98.11%), Postives = 260/264 (98.48%), Query Frame = 0


Query: 1   MVPPRRDAILNVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI 60
           MVPP RDAILNV PSSSQFCP+ ELNTNRSLFT FTSCRKPQLRCKPRPRSSVQCLFTGI
Sbjct: 19  MVPPTRDAILNVRPSSSQFCPKFELNTNRSLFTQFTSCRKPQLRCKPRPRSSVQCLFTGI 78

Query: 61  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 120
           VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL
Sbjct: 79  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 138

Query: 121 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV 180
           APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV
Sbjct: 139 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV 198

Query: 181 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL 240
           RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL
Sbjct: 199 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL 258

Query: 241 EVDILGKYVQRLLSNGAIKPIESP 264
           EVDILGKYVQRLLSNGAIKPIESP
Sbjct: 259 EVDILGKYVQRLLSNGAIKPIESP 282

[Close]

BLAST of Csor.00g129360 vs. ExPASy TrEMBL
Match: A0A6J1JEW8 (riboflavin synthase-like OS=Cucurbita maxima OX=3661 GN=LOC111483877 PE=4 SV=1)

HSP 1 Score: 513 bits (1321), Expect = 3.54e-183
Identity = 260/263 (98.86%), Postives = 260/263 (98.86%), Query Frame = 0


Query: 1   MVPPRRDAILNVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI 60
           MVPPRRDAILNVHPSSSQFCPR ELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI
Sbjct: 19  MVPPRRDAILNVHPSSSQFCPRFELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI 78

Query: 61  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 120
           VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL
Sbjct: 79  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 138

Query: 121 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV 180
           APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPE DSLWIKV
Sbjct: 139 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEGDSLWIKV 198

Query: 181 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL 240
           RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLK VGQLVNL
Sbjct: 199 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKNVGQLVNL 258

Query: 241 EVDILGKYVQRLLSNGAIKPIES 263
           EVDILGKYVQRLLSNGAIKPIES
Sbjct: 259 EVDILGKYVQRLLSNGAIKPIES 281

[Close]

BLAST of Csor.00g129360 vs. ExPASy TrEMBL
Match: A0A6J1FU46 (riboflavin synthase-like OS=Cucurbita moschata OX=3662 GN=LOC111448156 PE=4 SV=1)

HSP 1 Score: 511 bits (1317), Expect = 1.44e-182
Identity = 259/264 (98.11%), Postives = 260/264 (98.48%), Query Frame = 0


Query: 1   MVPPRRDAILNVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI 60
           MVPP RDAILNV PSSSQFCP+ ELNTNRSLFT FTSCRKPQLRCKPRPRSSVQCLFTGI
Sbjct: 19  MVPPTRDAILNVRPSSSQFCPKFELNTNRSLFTQFTSCRKPQLRCKPRPRSSVQCLFTGI 78

Query: 61  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 120
           VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL
Sbjct: 79  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 138

Query: 121 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV 180
           APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV
Sbjct: 139 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV 198

Query: 181 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL 240
           RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL
Sbjct: 199 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL 258

Query: 241 EVDILGKYVQRLLSNGAIKPIESP 264
           EVDILGKYVQRLLSNGAIKPIESP
Sbjct: 259 EVDILGKYVQRLLSNGAIKPIESP 282

[Close]

BLAST of Csor.00g129360 vs. ExPASy TrEMBL
Match: L0C7R1 (LOW QUALITY PROTEIN: riboflavin synthase OS=Momordica charantia OX=3673 GN=LOC111011273 PE=2 SV=1)

HSP 1 Score: 444 bits (1142), Expect = 6.67e-156
Identity = 224/264 (84.85%), Postives = 240/264 (90.91%), Query Frame = 0


Query: 1   MVPPRRDAILNVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI 60
           MVPP  + ILNV P S  FC + + NTNRSLFTLFTS  KPQLRCK RPR+S+QCLFTGI
Sbjct: 19  MVPPGGNTILNVRPGSPHFCLKFKFNTNRSLFTLFTSSCKPQLRCKSRPRTSIQCLFTGI 78

Query: 61  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 120
           VEE+G VK +G+ E+GGFDL+I AKTVLEGV+LGDSI+VNGTCLTVTAFDH+LSEF VGL
Sbjct: 79  VEEMGRVKNLGVTENGGFDLEIVAKTVLEGVHLGDSIAVNGTCLTVTAFDHELSEFTVGL 138

Query: 121 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV 180
           APETLRKTSLVEL  GSPVNLERAVQPISRMGGHFVQGHVDGTGEIISM+PEEDSLWIKV
Sbjct: 139 APETLRKTSLVELVPGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMEPEEDSLWIKV 198

Query: 181 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL 240
           RTSE LLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQ +VVIPLKKVG LVNL
Sbjct: 199 RTSEDLLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQNSVVIPLKKVGDLVNL 258

Query: 241 EVDILGKYVQRLLSNGAIKPIESP 264
           EVDILGKYVQRLLSNGAI PI+SP
Sbjct: 259 EVDILGKYVQRLLSNGAITPIKSP 282

[Close]

BLAST of Csor.00g129360 vs. ExPASy TrEMBL
Match: A0A0A0KAI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G128550 PE=4 SV=1)

HSP 1 Score: 436 bits (1120), Expect = 1.30e-152
Identity = 224/264 (84.85%), Postives = 238/264 (90.15%), Query Frame = 0


Query: 1   MVPPRRDAILNVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGI 60
           M+PP    I ++H  SS F P+   NT  SLFTLFTS  KPQLR K RPR+SVQCLFTGI
Sbjct: 19  MLPP----IGSLHLPSSHFFPKFNFNTKTSLFTLFTSTHKPQLRYKSRPRASVQCLFTGI 78

Query: 61  VEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGL 120
           VEEIGHVK +GI+E+GGFDL+I AKTVLEGVNLGDSI+VNGTCLTVTAFDHQLSEFKVGL
Sbjct: 79  VEEIGHVKSLGISENGGFDLEINAKTVLEGVNLGDSIAVNGTCLTVTAFDHQLSEFKVGL 138

Query: 121 APETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKV 180
           APETLRKTSLVEL+ GSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPE DSLWIKV
Sbjct: 139 APETLRKTSLVELSPGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEGDSLWIKV 198

Query: 181 RTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNL 240
           +TSEALL YIVPKGFIAVDG SLTVVDVFD+EKAFNFMLVAYTQ NVVIPLKKVG LVNL
Sbjct: 199 KTSEALLNYIVPKGFIAVDGASLTVVDVFDDEKAFNFMLVAYTQTNVVIPLKKVGHLVNL 258

Query: 241 EVDILGKYVQRLLSNGAIKPIESP 264
           EVDILGKYVQRLLSNGA+KPIESP
Sbjct: 259 EVDILGKYVQRLLSNGAVKPIESP 278

[Close]

BLAST of Csor.00g129360 vs. ExPASy TrEMBL
Match: A0A5D3C0R6 (Riboflavin synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001790 PE=4 SV=1)

HSP 1 Score: 432 bits (1110), Expect = 4.32e-151
Identity = 220/253 (86.96%), Postives = 231/253 (91.30%), Query Frame = 0


Query: 11  NVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGIVEEIGHVKQV 70
           N+H  SSQF P    NT  SLFTLFTS  KPQL  + RPR+SVQCLFTGIVEEIGHVK +
Sbjct: 25  NLHLPSSQFFPNFNFNTKTSLFTLFTSTHKPQLCYRSRPRASVQCLFTGIVEEIGHVKNL 84

Query: 71  GIAEHGGFDLKITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGLAPETLRKTSL 130
           GI E+GG+DL+I AKTVLEGVNLGDSI+VNGTCLTVTAFDHQLSEFKVGLAPETLRKTSL
Sbjct: 85  GIGENGGYDLEINAKTVLEGVNLGDSIAVNGTCLTVTAFDHQLSEFKVGLAPETLRKTSL 144

Query: 131 VELTAGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKVRTSEALLKYI 190
           VEL+ GSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPE DSLWIKV+TSEALL YI
Sbjct: 145 VELSPGSPVNLERAVQPISRMGGHFVQGHVDGTGEIISMDPEGDSLWIKVKTSEALLNYI 204

Query: 191 VPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNLEVDILGKYVQ 250
           VPKGFIAVDGTSLTVVDVFD+EKAFNFMLVAYTQKNVVIPLKKVG LVNLEVDILGKYVQ
Sbjct: 205 VPKGFIAVDGTSLTVVDVFDDEKAFNFMLVAYTQKNVVIPLKKVGHLVNLEVDILGKYVQ 264

Query: 251 RLLSNGAIKPIES 263
           RLLSNGAI PIES
Sbjct: 265 RLLSNGAINPIES 277

[Close]

BLAST of Csor.00g129360 vs. TAIR 10
Match: AT2G20690.1 (lumazine-binding family protein )

HSP 1 Score: 314.3 bits (804), Expect = 9.2e-86
Identity = 159/235 (67.66%), Postives = 191/235 (81.28%), Query Frame = 0


Query: 22  RLELNTNRSLFTLFTSCRKPQLRCKPRPRSSVQCLFTGIVEEIGHVKQVGIAEHGGFDLK 81
           R +  +  S  +L TSC + +   + R   S++ +FTGIVEE+G VK +G+A+HGGFDLK
Sbjct: 31  RFDCVSKSSKLSLKTSCGRSRTHHR-RQNLSIRSVFTGIVEEMGEVKDLGMADHGGFDLK 90

Query: 82  ITAKTVLEGVNLGDSISVNGTCLTVTAFDHQLSEFKVGLAPETLRKTSLVELTAGSPVNL 141
           I A+ VLE V LGDSI+VNGTCLTVT F+ +  EF VGLAPETLRKTSL EL  GSPVNL
Sbjct: 91  IGARVVLEDVKLGDSIAVNGTCLTVTEFNAE--EFTVGLAPETLRKTSLEELKKGSPVNL 150

Query: 142 ERAVQPISRMGGHFVQGHVDGTGEIISMDPEEDSLWIKVRTSEALLKYIVPKGFIAVDGT 201
           ERA+QP+SRMGGH VQGHVDGTG I SM+ E DSLW+KV+  + LLKYIVPKGF+AVDGT
Sbjct: 151 ERALQPVSRMGGHVVQGHVDGTGVIESMEVEGDSLWVKVKADKGLLKYIVPKGFVAVDGT 210

Query: 202 SLTVVDVFDEEKAFNFMLVAYTQKNVVIPLKKVGQLVNLEVDILGKYVQRLLSNG 257
           SLTVVDVFDEE  FNFM++AYTQ+NVVIP KK+GQ VNLEVDI+GKYV+RLL++G
Sbjct: 211 SLTVVDVFDEESCFNFMMIAYTQQNVVIPTKKIGQKVNLEVDIMGKYVERLLTSG 262

The following BLAST results are available for this feature:

BLAST of Csor.00g129360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y7P0	2.8e-47	50.75	Riboflavin synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=28...	[more]
P50854	2.4e-46	47.14	Riboflavin synthase OS=Actinobacillus pleuropneumoniae OX=715 GN=ribE PE=3 SV=1	[more]
A5DB51	5.9e-45	50.49	Riboflavin synthase OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / D...	[more]
P38145	3.4e-40	45.63	Riboflavin synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=...	[more]
P16440	1.6e-37	43.43	Riboflavin synthase OS=Bacillus subtilis (strain 168) OX=224308 GN=ribE PE=1 SV=...	[more]

BLAST of Csor.00g129360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570512.1	1.18e-186	100.00	hypothetical protein SDJN03_29427, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7010374.1	2.28e-186	100.00	rib5, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023513296.1	1.27e-183	98.86	riboflavin synthase-like [Cucurbita pepo subsp. pepo]	[more]
XP_022986014.1	7.32e-183	98.86	riboflavin synthase-like [Cucurbita maxima]	[more]
XP_022943374.1	2.98e-182	98.11	riboflavin synthase-like [Cucurbita moschata]	[more]

BLAST of Csor.00g129360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JEW8	3.54e-183	98.86	riboflavin synthase-like OS=Cucurbita maxima OX=3661 GN=LOC111483877 PE=4 SV=1	[more]
A0A6J1FU46	1.44e-182	98.11	riboflavin synthase-like OS=Cucurbita moschata OX=3662 GN=LOC111448156 PE=4 SV=1	[more]
L0C7R1	6.67e-156	84.85	LOW QUALITY PROTEIN: riboflavin synthase OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A0A0KAI5	1.30e-152	84.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G128550 PE=4 SV=1	[more]
A0A5D3C0R6	4.32e-151	86.96	Riboflavin synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G...	[more]

BLAST of Csor.00g129360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20690.1	9.2e-86	67.66	lumazine-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	GENE3D	2.40.30.20		coord: 56..146 e-value: 1.5E-25 score: 90.7
IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	GENE3D	2.40.30.20		coord: 159..259 e-value: 1.1E-30 score: 107.2
IPR026017	Lumazine-binding domain	PFAM	PF00677	Lum_binding	coord: 157..243 e-value: 9.2E-21 score: 73.6 coord: 58..144 e-value: 4.5E-21 score: 74.6
IPR026017	Lumazine-binding domain	PROSITE	PS51177	LUMAZINE_BIND	coord: 155..253 score: 22.368681
IPR026017	Lumazine-binding domain	PROSITE	PS51177	LUMAZINE_BIND	coord: 56..154 score: 25.098917
IPR001783	Lumazine-binding protein	TIGRFAM	TIGR00187	TIGR00187	coord: 56..256 e-value: 5.3E-62 score: 206.6
IPR001783	Lumazine-binding protein	PANTHER	PTHR21098	RIBOFLAVIN SYNTHASE ALPHA CHAIN	coord: 51..261
IPR001783	Lumazine-binding protein	CDD	cd00402	Riboflavin_synthase_like	coord: 57..245 e-value: 2.11155E-89 score: 261.168
None	No IPR available	PANTHER	PTHR21098:SF0	RIBOFLAVIN SYNTHASE	coord: 51..261
IPR017938	Riboflavin synthase-like beta-barrel	SUPERFAMILY	63380	Riboflavin synthase domain-like	coord: 56..146
IPR017938	Riboflavin synthase-like beta-barrel	SUPERFAMILY	63380	Riboflavin synthase domain-like	coord: 150..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g129360.m01	Csor.00g129360.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009231	riboflavin biosynthetic process
molecular_function	GO:0004746	riboflavin synthase activity