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Csor.00g128800 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTAGTTAGAGTTTTCGGTTCAACTGATATTGCTGTTGCACTTGTATTCTTTCTTTAATAGTCATAATGGAGGAAGTCGTTTGCATATTTTTCTCCTCGACTGGTGTTCTTTTGAGTTTGGTTTTCATCGAGATTTGCGTTTGCGCATCTCACACTTGATAATGCTTGTTTCGGTCTTCTTAACTATTTAATTATGATGCGATAAACAGGCGGATATTAGAAAGTGGTTCATGAAAGCACACGATAAAGACAGCGGCAATGCGTCAAAGCATGCAAAACCTGCTCCAAGCAATTTTGAGAAATCCGCTTCAGCTGAACTCTACAGTCCGGAAAAACTGTGTGTCTTCTGACCCTACTCTTCTTAGCAGTATGGATGGCATGTTCCAAGTATCATTATATTCTTGATTCATCTCTAGTTTCTCTAGCTGCGTATTTCGCTGGTCCTTTATTTTATAAAAACTCCTTGTTATGTGGATGGATTATTGATGTCTGTTTCTGGAACCATAGTTCTTGTATGGCTTGGTGTATCTGGTGTTTCTGAAGGAAAATGGAGCTATATTTAATACCTGGTCTTGACTTCATTTCTGATGAGGTGTCATAAAAAGCACATAATCTTGATGTTAATTAATTGTCTCTAGTTTTTGGTTTGATCCTGCAAGAAAGATAAACTCAGAATAGAAAAACTCTTGGTATTCTGGTTTGTAAATAGAAAGGATGCACTTCAGAACGAGTAAAAGCAGCTAGATATGTTGGAATTGCTACAGGTGGAACTCCTCTGGGTAATCCTTGACGTTAAAATGTTAGAGGTGTTGATGAGGGAGGATGAATATTGGAGACAAAAAACCTCATGATGGAAAGTTAGATGCGGAGTCTTGTTACGAGCAGGAGACACCAAATCTGAAGTTATTTGGTTATTTCAACAACTTACTTCAACAAGAAAGTTGGACAAAAGTGGCTTTCTCATATTAGGGTGAGAATTGTTTCCGTGCTAGATTCTCGGAAGAGTATCAGATAATAACCAGCATTCTTTATTTTTTAGGCATGCCTGGAGATTCTTATGGTAACTGCTGGAATGGAAGCTGAGAATGGGATGTCTTGTTGAGATGACATTTTGTAGATGCAGAGATTTCAGGAGGCTTGACTCATTGGTCTTATGAAATTTTACAAAAAAAGGTAGAAAGGAGCCTCGATGCAAAGGAGTTATAATAAACTTCTTCAATTAGCAAAAAGTGTTCATTGAGTTTTTGAACCCATCGTTTTCAAATTGTCATGAGTTCTTTTTTTTTTTGGTTTCACACTTGTTTCTGTTTCTTGAATGATCATGACAAATATCGACTTCATTGGAATGGTTTATATTTTTCATTCAATTATAGTTTGTTCTTTCCACTTGTGACGTCACTTTATACTTATTTCAAACATAGGGTTTTTAAAACATGTTATTCAGGCAGGCCTTTCAAGCGGAGGAATCTGAGCATTATACTTGCATGCAGGAAAATTATATTAATTATAGGCCAAACTCTGTTCGTAAGGATGACAATGGGGTCAAACGGATGGATTTGATTGCCTGTGCAGCTGATTCCATTGCAGATGGGGATATAATCAATGTACAAATTCAAAGGCATCGACAGTAGAAACTCTCTCAAGAGTAGTTCTATTGCTTCTTGTGTAATACCGTAAGTTTCAGGACTTCACCTCTGTGCATCCGATGCTTTTCTTAACTACCATTACTATTCAATATTGATCTTTATGTGATAGAGCGTGATTATTGCATGGGCAAAGAAAACGCTGGAGCAGGTGATGAAATTCTGTACATACAAGTTTTAAGGTTTTGAAATCTTATTTTGTTTAAATTATTTATGAGTTAGAAAATTGAGTATTTATTATACGTTTTGGAGGTATGAAAAAATAGCTATTCTTAGAGAGGTGGTTGAATTTGGCTAGTAGAGTTTTTCTTGTAATTTTTTATTATAGTAGGAGCGAATCATTAAACTATTTTAATGTATTTGGTATGCATTACAATCTTCTACCTGTGAGCAGAAATACTTTATTTTGGATAATGCATTCGTGCCCCCTGTTTTAGTCGTCATTAGCTCTTCACTATGTTTTGTACATGCAGGGAGAGTGTAATTTTAACAGATTTGGTGCATGGCTGGGAAAAAAATTCAACATTTGGAAAACATATGAGGCTTTTGGAAGACTTTCATGTTCACATTCTTGCTTCTCGCGAGTCCTGTTCATGGAGGTAATTTGTAATGTGCTGTATTTGTTTTTTTTCCATTGTTGTAGCATGTTGTACTTCCTGTATGGATATTCCTACTGTTGAAGTTTCAGGAACCTTTTGAATTAAATATCTTCAAATTGTATGCTTTTTTTTTTTTTTTTTTTTTTTTTTATACCTTTGCCCTTAGGAGTTTGCCTTTCTTTTTCTTCGAACATATTGTTAACTTCTATTTTTTATTAAAAAGATCTACATTTCCAATGGCTTAGTAGTTCATTTAGACTTCTCCATAAGATAGACTAGATTTCTAATGGTCAGGAGAAAAGCTTTCAATTCAAGCCAAGGAGAGAGAGACCCATCCCACTAGATCCCCCTATCATTATAAAAGTTTTTCTACATTATGGGTTCTTCTTCATCTTAAGATTATTCCCAAATATATGCCTTCTTGCATGTTCTGAAATCTAAGCTGGTTTGTCCATGTTCATATTTGAAAACTTGTTAAAATTTTGTGTCCCGAATACACGTGTAAGCTGCTTAACCCCACTCTTTTCACATGGATATGTGTGTCATTAGTTGCAAGCTATAATACTTGTATACAAAATTATACAGGGAACACCTACAAGCTGAGAACCTTACTCTTTTTCTAAAGAGGTTGACTGAGCCACTGCGCAAGCTGCCCGAGGTTAGACTATATTTAAATCGTCTGATTTTTGTTATACGAATGGTAAATTCTTCGAGGCACTGTGATTTACTTAATAATTTTTTTCCAATGATATGATTGCCAGAATGAAGCAGTTAAAATGGTTGTTGAGTTTATGAGTCTATATTCAATCAATCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGTATTGACATCTACAGTTTGTTTAGTGATATCATGGCTGCTATACTAACTACCATTTTTTAGCATAGTTTTCTTACAGACGATTCTCCTAATCACAGGGTCGTAAGAATCCATTGGATGGCGTGCCCCCTGCTGTGAAAGCTGCTCTAACAAAGGCATACAAAGAAGTAAGCAAGACACGTATGGGGATACAGTTCCTGCAATGAAAAAAAGCCCCAAAGAAGCGAATTGCAGCGATTCTAGAACTCTTTGGACAACAAGGGTGCAGGTAAGATTTGATCCGTCTTTTCGAGGTCAGCGGTTAGTGAATGAGTTGCGCTTGTTGGGCAAGTCCTGCTTCTCTAGTTGCCAATTATTCCTTGTCGCAATTATAGAAGACTCCACAAACGGTGAGAAGTTGCGACTGGACCTTCAAATCTTGAATAAGAAACTGCAATTGGAATATGAAGTCCTTGCTATTGGTTTTATATTTTCTATTTGTTTGGAATGCAAGTGCAGTTGGAATTGAAAGGCGTGGAAAATTCAAGCGCCAAGAAATTCGGTGGCAGAGGAAGAGGAGGTAGTTCCCAGGATTCAAAGAAGAAAGGTGGGCGAGGTTCAGGATCTGCCACAAAGAGGAGAAAATGA ATGGCGGATATTAGAAAGTGGTTCATGAAAGCACACGATAAAGACAGCGGCAATGCGTCAAAGCATGCAAAACCTGCTCCAAGCAATTTTGAGAAATCCGCTTCAGCTGAACTCTACAGTCCGGAAAAACTGAAAATGGAGCTATATTTAATACCTGGTCTTGACTTCATTTCTGATGAGAAAGGATGCACTTCAGAACGAGTAAAAGCAGCTAGATATGTTGGAATTGCTACAGGTGGAACTCCTCTGGGAGACACCAAATCTGAAGTTATTTGGTTATTTCAACAACTTACTTCAACAAGAAAGTTGGACAAAAGTGGCTTTCTCATATTAGGGCATGCCTGGAGATTCTTATGGGAGAGTGTAATTTTAACAGATTTGGTGCATGGCTGGGAAAAAAATTCAACATTTGGAAAACATATGAGGCTTTTGGAAGACTTTCATGTTCACATTCTTGCTTCTCGCGAGTCCTGTTCATGGAGGGAACACCTACAAGCTGAGAACCTTACTCTTTTTCTAAAGAGGTTGACTGAGCCACTGCGCAAGCTGCCCGAGAATGAAGCAGTTAAAATGGTTGTTGAGTTTATGAGTCTATATTCAATCAATCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGCGTGCCCCCTGCTGTGAAAGCTGCTCTAACAAAGGCATACAAAGAATTGGAATTGAAAGGCGTGGAAAATTCAAGCGCCAAGAAATTCGGTGGCAGAGGAAGAGGAGGTAGTTCCCAGGATTCAAAGAAGAAAGGTGGGCGAGGTTCAGGATCTGCCACAAAGAGGAGAAAATGA ATGGCGGATATTAGAAAGTGGTTCATGAAAGCACACGATAAAGACAGCGGCAATGCGTCAAAGCATGCAAAACCTGCTCCAAGCAATTTTGAGAAATCCGCTTCAGCTGAACTCTACAGTCCGGAAAAACTGAAAATGGAGCTATATTTAATACCTGGTCTTGACTTCATTTCTGATGAGAAAGGATGCACTTCAGAACGAGTAAAAGCAGCTAGATATGTTGGAATTGCTACAGGTGGAACTCCTCTGGGAGACACCAAATCTGAAGTTATTTGGTTATTTCAACAACTTACTTCAACAAGAAAGTTGGACAAAAGTGGCTTTCTCATATTAGGGCATGCCTGGAGATTCTTATGGGAGAGTGTAATTTTAACAGATTTGGTGCATGGCTGGGAAAAAAATTCAACATTTGGAAAACATATGAGGCTTTTGGAAGACTTTCATGTTCACATTCTTGCTTCTCGCGAGTCCTGTTCATGGAGGGAACACCTACAAGCTGAGAACCTTACTCTTTTTCTAAAGAGGTTGACTGAGCCACTGCGCAAGCTGCCCGAGAATGAAGCAGTTAAAATGGTTGTTGAGTTTATGAGTCTATATTCAATCAATCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGCGTGCCCCCTGCTGTGAAAGCTGCTCTAACAAAGGCATACAAAGAATTGGAATTGAAAGGCGTGGAAAATTCAAGCGCCAAGAAATTCGGTGGCAGAGGAAGAGGAGGTAGTTCCCAGGATTCAAAGAAGAAAGGTGGGCGAGGTTCAGGATCTGCCACAAAGAGGAGAAAATGA MADIRKWFMKAHDKDSGNASKHAKPAPSNFEKSASAELYSPEKLKMELYLIPGLDFISDEKGCTSERVKAARYVGIATGGTPLGDTKSEVIWLFQQLTSTRKLDKSGFLILGHAWRFLWESVILTDLVHGWEKNSTFGKHMRLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKELELKGVENSSAKKFGGRGRGGSSQDSKKKGGRGSGSATKRRK Homology
BLAST of Csor.00g128800 vs. ExPASy Swiss-Prot
Match: Q9C587 (Replication factor C subunit 1 OS=Arabidopsis thaliana OX=3702 GN=RFC1 PE=2 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 6.5e-34 Identity = 72/112 (64.29%), Postives = 90/112 (80.36%), Query Frame = 0
BLAST of Csor.00g128800 vs. ExPASy Swiss-Prot
Match: Q2R2B4 (Replication factor C subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC1 PE=2 SV=2) HSP 1 Score: 134.0 bits (336), Expect = 2.6e-30 Identity = 66/111 (59.46%), Postives = 90/111 (81.08%), Query Frame = 0
BLAST of Csor.00g128800 vs. ExPASy Swiss-Prot
Match: P35251 (Replication factor C subunit 1 OS=Homo sapiens OX=9606 GN=RFC1 PE=1 SV=4) HSP 1 Score: 62.4 bits (150), Expect = 9.5e-09 Identity = 35/107 (32.71%), Postives = 62/107 (57.94%), Query Frame = 0
BLAST of Csor.00g128800 vs. ExPASy Swiss-Prot
Match: P35600 (Replication factor C subunit 1 OS=Drosophila melanogaster OX=7227 GN=Gnf1 PE=1 SV=2) HSP 1 Score: 62.0 bits (149), Expect = 1.2e-08 Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 0
BLAST of Csor.00g128800 vs. ExPASy Swiss-Prot
Match: P35601 (Replication factor C subunit 1 OS=Mus musculus OX=10090 GN=Rfc1 PE=1 SV=2) HSP 1 Score: 56.2 bits (134), Expect = 6.8e-07 Identity = 32/107 (29.91%), Postives = 59/107 (55.14%), Query Frame = 0
BLAST of Csor.00g128800 vs. NCBI nr
Match: KAG6570456.1 (Replication factor C subunit 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 551 bits (1420), Expect = 1.14e-197 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
BLAST of Csor.00g128800 vs. NCBI nr
Match: KAG7010318.1 (Replication factor C subunit 1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 291 bits (744), Expect = 5.93e-91 Identity = 162/204 (79.41%), Postives = 162/204 (79.41%), Query Frame = 0
BLAST of Csor.00g128800 vs. NCBI nr
Match: XP_022986995.1 (replication factor C subunit 1-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 236 bits (601), Expect = 3.76e-75 Identity = 118/130 (90.77%), Postives = 121/130 (93.08%), Query Frame = 0
BLAST of Csor.00g128800 vs. NCBI nr
Match: XP_022986996.1 (replication factor C subunit 1-like isoform X3 [Cucurbita maxima] >XP_022986997.1 replication factor C subunit 1-like isoform X3 [Cucurbita maxima]) HSP 1 Score: 234 bits (598), Expect = 9.39e-75 Identity = 116/121 (95.87%), Postives = 117/121 (96.69%), Query Frame = 0
BLAST of Csor.00g128800 vs. NCBI nr
Match: XP_022986994.1 (replication factor C subunit 1-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 234 bits (598), Expect = 1.77e-74 Identity = 116/121 (95.87%), Postives = 117/121 (96.69%), Query Frame = 0
BLAST of Csor.00g128800 vs. ExPASy TrEMBL
Match: A0A6J1JFK7 (replication factor C subunit 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484577 PE=4 SV=1) HSP 1 Score: 236 bits (601), Expect = 1.82e-75 Identity = 118/130 (90.77%), Postives = 121/130 (93.08%), Query Frame = 0
BLAST of Csor.00g128800 vs. ExPASy TrEMBL
Match: A0A6J1J945 (replication factor C subunit 1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111484577 PE=4 SV=1) HSP 1 Score: 234 bits (598), Expect = 4.55e-75 Identity = 116/121 (95.87%), Postives = 117/121 (96.69%), Query Frame = 0
BLAST of Csor.00g128800 vs. ExPASy TrEMBL
Match: A0A6J1JHL7 (replication factor C subunit 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484577 PE=4 SV=1) HSP 1 Score: 234 bits (598), Expect = 8.57e-75 Identity = 116/121 (95.87%), Postives = 117/121 (96.69%), Query Frame = 0
BLAST of Csor.00g128800 vs. ExPASy TrEMBL
Match: A0A6J1H397 (Replication factor C subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111459280 PE=3 SV=1) HSP 1 Score: 202 bits (515), Expect = 1.60e-55 Identity = 129/233 (55.36%), Postives = 140/233 (60.09%), Query Frame = 0
BLAST of Csor.00g128800 vs. ExPASy TrEMBL
Match: A0A6J1H1H3 (Replication factor C subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111459280 PE=3 SV=1) HSP 1 Score: 202 bits (514), Expect = 2.20e-55 Identity = 129/234 (55.13%), Postives = 140/234 (59.83%), Query Frame = 0
BLAST of Csor.00g128800 vs. TAIR 10
Match: AT5G22010.1 (replication factor C1 ) HSP 1 Score: 146.0 bits (367), Expect = 4.6e-35 Identity = 72/112 (64.29%), Postives = 90/112 (80.36%), Query Frame = 0
HSP 2 Score: 40.8 bits (94), Expect = 2.1e-03 Identity = 27/72 (37.50%), Postives = 38/72 (52.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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