Csor.00g127730 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g127730
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionhigh mobility group B protein 6-like
LocationCsor_Chr07: 6937407 .. 6941295 (+)
RNA-Seq ExpressionCsor.00g127730
SyntenyCsor.00g127730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTCTCTTCTCCATCCCACGCATCTAGATCTTCATCTCAAGTCCGGCCGCCGCCCACTCCAACCGAGGAATTCGCTCTCAAATCATGTTCCTGCAGTCGCCAAAATCGTCAAATCCAAGGCGGAACGGGTAGAGATCCCGCTATCCGGAGATGCCAATAAGGAAAACGTACCGCCGATTCACGCGACGGCGACGAGGACAGAGTCATGTGATTTGTCTCTGGCGGATGAACTCAATGCGGTTAAGATGAAGCTTGAGAGATTGAGATTAGACGGTGAACGGACGGAGAAAATGTTGAGAGAGAGGGATATGGTGTTGGAGATGCGGAGGAAGGAGATTTTGCAGAGAAGTGAGGTGCAGAGGGATCTGGAGATGGAGGTCGACAGGTTATTCAGATTGAAGGAACTCAGATCGTACTGTATGGTAAACAATCTTTTTCGCGAGTTTGAAGTTTCGATTGATTGATTCGTGTTTATCTGTTGTTCGTTTGCTTAATTTGATTTGACTTGGATCAGAGAATTTCTCCGAAGCGAAGCCTCAGAGAGAAGGAGCGAGAGAAGATATTCACCGACTTACAATTTCAGGTAAATTCCGATCTCTAACCTCGAAGCTATTTCTCGATTTCTAAGTTCCGGATTCATCTGCTTCAATGTAAAATCAATCAATAATTCTCCGATATTTTCAGGAGTTTGAAATCAGCGACGAAGAAGAATCGATTGACGAGAATTCATCGTCGGATTCCTCAGAATTCGTCATAGGAATTTGAAGTCATCTCAGTTTTGTTCGCCGATTTTGATTTTCCCCAATTTTTCGATTGCCTCTTCATCTTCTTCGGATTTCTTCAGAAAGTGGCATTAATTGATTCAAAGGTAAAAAACAAAATCAATGTAATACCTCATTATGTTGTTCTCTTCATGATGATGGAAACCGTTTGTAATCAATATCACTCTTCATCTCCTCCACTTCATTTAATGTCTGAGGCCGAAGAAATTCCAAATCGGTGTTAGTTCATGATTCTCTCTCGCGCATTATCATCTGCATTGAATTTTCTGTGTGAGTTTATGAGATTGGGGGAGATTGATTCAAACATTCATTTAATTTGTTAGTCAGTTTTGTAATGAAACTACTCATCATAAATCAAAGAGTTCAAAGGAATTTTGATCCTTGAAGAAGAAAAAGAAAACCTAAGTAAAATCAATTGAAACGGACTAACATGAATTAAACACAAAATAAATAAACTAGAATGCGTTTTTTTTTTTTTTTTTTTTTTACTCCTTTTTTTGTTCTTCTCTCTTTCTCCTCCATTATTTTATTAAGAAAAATGGAATAGTCCCAAATCTAGAATTAACTCGTGTTTCAGATCTAATGTTCGTTCCTTTTTCTGTTCCCCGAAAAATAACGGAGAAAAAGAAAAGAAAGAAGTAGGGGGTGTTTTAAAAAAAAAACACGATGACTCGAGAAAAAAAAAAAACTACTCAAACAACACGAACTACTCTAACCTAAAAAATTTATGTTTGAGTTGAGTTGAGTTCATTATTTAATGAGAGTTATTAAATTGAAAATACTTATAACGAACAATTGAATTTATGATTGAGTTGAGTTGAGTTGAGTTCATTATTTAACGAGACTTATTCCTCCTTTACGTTAACTTTTTTCTCAAGAACGTATTATTATTAGCATTTGGAAGCTAACAACCGATCAAATAAGTTCTAAAAACCTAAAATTCTTTAACATAACCATCTTTCGTAGCTTTCCAAAGAACGAAAGGAAAAAAAAGGTTCAATACTTGTTCGGATGAATTTGAAAATGGGTAGATTTCAGGATTTGTTCAATTCCTCGAAGTCGAAGGATAACTTATTGTCTTACTTTGTGCTATCAATTTCTATATTGAATTCGTATAAAATCCCGCTATTCACTGTTTGAATTTGATATCAAATTTCGAGACGAAAAATAAATTCTCGATAATCCATCGACTATTTCCATCCCCAATTTAGGTTTGTTGTCTTCATTGCATCGAGATTAATATTTGAATTTAAAGTTTAGTTGTTCCGTGTCTCTACATTAAAGCGTAGCCAAAAAACCTTTTAGTACAATTCTGCAACGGCACGAGTTCAGTAATAGTACAAACTAAGAATGCCAGAGTATTGTCTATACGAAGAACAAAATGGAGTAGATGTTCGGGTTCGGTAGCTAAGAACCAAACAAACACTTATTCTATTTACCTCATTCTCAAATAACGAACAAGAACCTTTAACCTATTTATTTACCTCGTGAGTTAATAAAAACACCGAAATAATTAAATAATTAAATGTCAAAATTAACGTTTTAAAAATCCATAACGGTTGCTTCAAATTCTAACAAAATTAGGGACATTTAAGGAAATAAATTAAAGTTTTTAATTTGTTCAAATAAGTATGGGCCAAATAGAAAGGAATAAAATTAATACCCTTTTAAATAAGATTTCAAACGAATATTCCAATTTATAACCCAATTTAAAAAAAAAAAATTAAAAAATATATTTTTTAATTTATAAAATTTGAATTAAATATAAATAAATATAAATAATACCCACTAATAATTATTTAGGTTAATAGCATATGAAACCAAACTGCCATTTAATATTCAAATCAGTTCCATTTAGAATTGAATTAAATTAAATTAATCAATTAAATGAAAAACAATTTAAGAAACAAAAATCTATATTAAATTCATATTTTTAAAATTAAAAATTCAAAAATAATTATAGTACTAGAACGTTAACGTTTTTTATCCAGCGATGAATAATAAATTTTTAAAATATATTTTAGTCATTTTTATAAAAAAAAACGTAATTATAATTTTTTTTTTTTTTTTTGGAAAATTAAGGATAATAATTAATGCGAAATCACAAATTAGGAATATTTTGTATAATTTAGAAGAAAAAAAAAATAAAAAGGAAAAAAAAGAAGGGAAAGGAAGATAAGTTTGAGAGCGTAACAAGAACAAGGCTGGCAGGCTGCAAAAGGAAAAAGGACGAGACGGTGCCGTATTCACTGAACCAGCATTGATCGATCGATCGATCGAAACCATAGCTGTGTAAGAACAGCCCAATTTCAATTTCAATTTCGATTTCAATTTCGATTCCATTTCCATTTCCAAATGCAAAGCTTTTGATTTTGAATTGGTGGTTTTCCGATTCTCTCTCTGTCTGTCTCTCTGCGATTTCCTCGGACTCAGCACCTCTCTCTCTCTCTCTCCAATTCATTCCCATTTCAATGTCCTTTTTTCTATTCTTATCCCTCTTCCTCTTCTTCCCCAGTTCTTAATTTTTTCCGTTTCCTTTTGGGTGTTTTTCGATCTTCCCGCCGCTCGATTTATCTCCGGTGACAGCGATTTCAGGTGGGTGTTCCCCGATCCGCCTCCTCTTCTTTTCTTCTTCTCTCACTTCTCTGCCATTTCGATATTTGATTTTGTATTCAGTGCATTGAAGGGCGTCTGATCTCTCTGTGCTTCTACTTCGTTTCATCAATTCCGAGACGATAACCCTTCTCTTTCATCGAACTTACTGGTACCTACCTCTGTTTTTCTTTTAATTCTTTCCTTTTCTTCATTGTTTACATCTTTTTTCTTTTGCCTTTTGTGTTTTTGTGATGATTGCATATCTGGGTCTGATTCGATTGGGGCTCTTTTTCTGAAGGAAAAGAAAATTTAGGTTTATTTTGTTTTTTCAGGCTTAGGGCTGGTTATTAATTTGGGTTTGTCTCATTTGCTATATAGGTTTTTGGCATTTCTTGCTTGGGGAGTCGTAGGGTGTTTGTTGTTATTTGGATCCACTAGAGGAAGTTGTCAATACATCCTCGAAAAGAGCTGTTTGTGCATCATTGATTCCTGTGTTCCTCTGTTGTAA

mRNA sequence

ATGCAGTCTCTTCTCCATCCCACGCATCTAGATCTTCATCTCAAGTCCGGCCGCCGCCCACTCCAACCGAGGAATTCGCTCTCAAATCATGTTCCTGCAGTCGCCAAAATCGTCAAATCCAAGGCGGAACGGGTAGAGATCCCGCTATCCGGAGATGCCAATAAGGAAAACGTACCGCCGATTCACGCGACGGCGACGAGGACAGAGTCATGTGATTTGTCTCTGGCGGATGAACTCAATGCGGTTAAGATGAAGCTTGAGAGATTGAGATTAGACGGTGAACGGACGGAGAAAATGTTGAGAGAGAGGGATATGGTGTTGGAGATGCGGAGGAAGGAGATTTTGCAGAGAAGTGAGGTGCAGAGGGATCTGGAGATGGAGGTCGACAGGTTATTCAGATTGAAGGAACTCAGATCGTACTGTATGAGAATTTCTCCGAAGCGAAGCCTCAGAGAGAAGGAGCGAGAGAAGATATTCACCGACTTACAATTTCAGGAGTTTGAAATCAGCGACGAAGAAGAATCGATTGACGAGAATTCATCGTCGGATTCCTCAGAATTCTTCTTAATTTTTTCCGTTTCCTTTTGGGTGTTTTTCGATCTTCCCGCCGCTCGATTTATCTCCGGTGACAGCGATTTCAGGGCGTCTGATCTCTCTGTGCTTCTACTTCGTTTCATCAATTCCGAGACGATAACCCTTCTCTTTCATCGAACTTACTGGTTTTTGGCATTTCTTGCTTGGGGAGTCGTAGGGTGTTTGTTGTTATTTGGATCCACTAGAGGAAGTTGTCAATACATCCTCGAAAAGAGCTGTTTGTGCATCATTGATTCCTGTGTTCCTCTGTTGTAA

Coding sequence (CDS)

ATGCAGTCTCTTCTCCATCCCACGCATCTAGATCTTCATCTCAAGTCCGGCCGCCGCCCACTCCAACCGAGGAATTCGCTCTCAAATCATGTTCCTGCAGTCGCCAAAATCGTCAAATCCAAGGCGGAACGGGTAGAGATCCCGCTATCCGGAGATGCCAATAAGGAAAACGTACCGCCGATTCACGCGACGGCGACGAGGACAGAGTCATGTGATTTGTCTCTGGCGGATGAACTCAATGCGGTTAAGATGAAGCTTGAGAGATTGAGATTAGACGGTGAACGGACGGAGAAAATGTTGAGAGAGAGGGATATGGTGTTGGAGATGCGGAGGAAGGAGATTTTGCAGAGAAGTGAGGTGCAGAGGGATCTGGAGATGGAGGTCGACAGGTTATTCAGATTGAAGGAACTCAGATCGTACTGTATGAGAATTTCTCCGAAGCGAAGCCTCAGAGAGAAGGAGCGAGAGAAGATATTCACCGACTTACAATTTCAGGAGTTTGAAATCAGCGACGAAGAAGAATCGATTGACGAGAATTCATCGTCGGATTCCTCAGAATTCTTCTTAATTTTTTCCGTTTCCTTTTGGGTGTTTTTCGATCTTCCCGCCGCTCGATTTATCTCCGGTGACAGCGATTTCAGGGCGTCTGATCTCTCTGTGCTTCTACTTCGTTTCATCAATTCCGAGACGATAACCCTTCTCTTTCATCGAACTTACTGGTTTTTGGCATTTCTTGCTTGGGGAGTCGTAGGGTGTTTGTTGTTATTTGGATCCACTAGAGGAAGTTGTCAATACATCCTCGAAAAGAGCTGTTTGTGCATCATTGATTCCTGTGTTCCTCTGTTGTAA

Protein sequence

MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPPIHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEVQRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENSSSDSSEFFLIFSVSFWVFFDLPAARFISGDSDFRASDLSVLLLRFINSETITLLFHRTYWFLAFLAWGVVGCLLLFGSTRGSCQYILEKSCLCIIDSCVPLL
Homology
[Close]
BLAST of Csor.00g127730 vs. NCBI nr
Match: KAG6595551.1 (hypothetical protein SDJN03_12104, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 531 bits (1369), Expect = 7.31e-190
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0 

Query: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60
           MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180

Query: 181 SSDSSEFFLIFSVSFWVFFDLPAARFISGDSDFRASDLSVLLLRFINSETITLLFHRTYW 240
           SSDSSEFFLIFSVSFWVFFDLPAARFISGDSDFRASDLSVLLLRFINSETITLLFHRTYW
Sbjct: 181 SSDSSEFFLIFSVSFWVFFDLPAARFISGDSDFRASDLSVLLLRFINSETITLLFHRTYW 240

Query: 241 FLAFLAWGVVGCLLLFGSTRGSCQYILEKSCLCIIDSCVPLL 282
           FLAFLAWGVVGCLLLFGSTRGSCQYILEKSCLCIIDSCVPLL
Sbjct: 241 FLAFLAWGVVGCLLLFGSTRGSCQYILEKSCLCIIDSCVPLL 282

[Close]
BLAST of Csor.00g127730 vs. NCBI nr
Match: KAG7027530.1 (hypothetical protein SDJN02_11544, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347 bits (891), Expect = 1.79e-118
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60
           MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180

Query: 181 SSDSSEF 187
           SSDSSEF
Sbjct: 181 SSDSSEF 187

[Close]
BLAST of Csor.00g127730 vs. NCBI nr
Match: XP_022924949.1 (high mobility group B protein 6-like [Cucurbita moschata])

HSP 1 Score: 342 bits (877), Expect = 2.43e-116
Identity = 185/187 (98.93%), Postives = 185/187 (98.93%), Query Frame = 0 

Query: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60
           MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRIS  RSLREKEREKIFTDLQFQEFEISDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISSMRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180

Query: 181 SSDSSEF 187
           SSDSSEF
Sbjct: 181 SSDSSEF 187

[Close]
BLAST of Csor.00g127730 vs. NCBI nr
Match: XP_023517579.1 (high mobility group B protein 6-like [Cucurbita pepo subsp. pepo] >XP_023518497.1 high mobility group B protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 338 bits (866), Expect = 1.14e-114
Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0 

Query: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60
           MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKEN PP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENEPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEM+RKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRISP RSLREKEREKIFTDLQFQEFEISDEEESIDE S
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFEISDEEESIDEIS 180

Query: 181 SSDSSEF 187
           SSDSSEF
Sbjct: 181 SSDSSEF 187

[Close]
BLAST of Csor.00g127730 vs. NCBI nr
Match: XP_022966463.1 (high mobility group B protein 6-like [Cucurbita maxima])

HSP 1 Score: 332 bits (850), Expect = 3.11e-112
Identity = 179/187 (95.72%), Postives = 182/187 (97.33%), Query Frame = 0 

Query: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60
           MQSLLHPTHLDLHLKSGRRPLQ +NSLSNHVPAVAKIVKSK E+VEIPLSGDANKEN PP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEM+RKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRISP RSLREKEREKIFTDLQFQEFE SDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENS 180

Query: 181 SSDSSEF 187
           SSDSSEF
Sbjct: 181 SSDSSEF 187

[Close]
BLAST of Csor.00g127730 vs. ExPASy TrEMBL
Match: A0A6J1EAP1 (high mobility group B protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC111432340 PE=4 SV=1)

HSP 1 Score: 342 bits (877), Expect = 1.17e-116
Identity = 185/187 (98.93%), Postives = 185/187 (98.93%), Query Frame = 0 

Query: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60
           MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRIS  RSLREKEREKIFTDLQFQEFEISDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISSMRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180

Query: 181 SSDSSEF 187
           SSDSSEF
Sbjct: 181 SSDSSEF 187

[Close]
BLAST of Csor.00g127730 vs. ExPASy TrEMBL
Match: A0A6J1HS84 (high mobility group B protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111466110 PE=4 SV=1)

HSP 1 Score: 332 bits (850), Expect = 1.51e-112
Identity = 179/187 (95.72%), Postives = 182/187 (97.33%), Query Frame = 0 

Query: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60
           MQSLLHPTHLDLHLKSGRRPLQ +NSLSNHVPAVAKIVKSK E+VEIPLSGDANKEN PP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEM+RKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRISP RSLREKEREKIFTDLQFQEFE SDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENS 180

Query: 181 SSDSSEF 187
           SSDSSEF
Sbjct: 181 SSDSSEF 187

[Close]
BLAST of Csor.00g127730 vs. ExPASy TrEMBL
Match: A0A5A7SJQ2 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00510 PE=4 SV=1)

HSP 1 Score: 259 bits (661), Expect = 7.97e-84
Identity = 147/189 (77.78%), Postives = 161/189 (85.19%), Query Frame = 0 

Query: 1   MQSLLHP--THLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENV 60
           MQ+L HP  +  D+ LKSGRRPLQP+NSL N VP+VAKI+KSK E ++I LSGDANKEN 
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRS 120
           PP  AT    ESCDLSLADELNAVK K+ERLRLDGERTEKMLRERD+VLE+R KE+LQRS
Sbjct: 61  PP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRS 120

Query: 121 EVQRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDE 180
           + QRDLEMEVDRLFRLKELRSYCMRISP RSLREKEREKIFTD QF EFEI D EES+ E
Sbjct: 121 QEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGE 180

Query: 181 NSSSDSSEF 187
           NSS DSSEF
Sbjct: 181 NSSLDSSEF 187

[Close]
BLAST of Csor.00g127730 vs. ExPASy TrEMBL
Match: A0A5D3CEI7 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00430 PE=4 SV=1)

HSP 1 Score: 258 bits (660), Expect = 1.13e-83
Identity = 147/189 (77.78%), Postives = 161/189 (85.19%), Query Frame = 0 

Query: 1   MQSLLHP--THLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENV 60
           MQ+L HP  +  D+ LKSGRRPLQP+NSL N VP+VAKI+KSK E ++I LSGDANKEN 
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRS 120
           PP  AT    ESCDLSLADELNAVK K+ERLRLDGERTEKMLRERD+VLE+R KE+LQRS
Sbjct: 61  PP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRS 120

Query: 121 EVQRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDE 180
           + QRDLEMEVDRLFRLKELRSYCMRISP RSLREKEREKIFTD QF EFEI D EES+ E
Sbjct: 121 QEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGE 180

Query: 181 NSSSDSSEF 187
           NSS DSSEF
Sbjct: 181 NSSLDSSEF 187

[Close]
BLAST of Csor.00g127730 vs. ExPASy TrEMBL
Match: A0A1S3CJ78 (high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=1)

HSP 1 Score: 258 bits (660), Expect = 1.13e-83
Identity = 147/189 (77.78%), Postives = 161/189 (85.19%), Query Frame = 0 

Query: 1   MQSLLHP--THLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENV 60
           MQ+L HP  +  D+ LKSGRRPLQP+NSL N VP+VAKI+KSK E ++I LSGDANKEN 
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRS 120
           PP  AT    ESCDLSLADELNAVK K+ERLRLDGERTEKMLRERD+VLE+R KE+LQRS
Sbjct: 61  PP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRS 120

Query: 121 EVQRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDE 180
           + QRDLEMEVDRLFRLKELRSYCMRISP RSLREKEREKIFTD QF EFEI D EES+ E
Sbjct: 121 QEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGE 180

Query: 181 NSSSDSSEF 187
           NSS DSSEF
Sbjct: 181 NSSLDSSEF 187

[Close]
BLAST of Csor.00g127730 vs. TAIR 10
Match: AT5G01910.1 (unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-21
Identity = 77/177 (43.50%), Postives = 103/177 (58.19%), Query Frame = 0 

Query: 16  SGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPPIHATATRTESCDLSL 75
           SGR+ LQPRN        + +  K  A  V+ P + +  KEN+           S D SL
Sbjct: 4   SGRKALQPRN--------IYQTPKEDAFFVK-PKAAEKLKENL-------NLETSIDASL 63

Query: 76  ADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEVQRDLEMEVDRLFRLK 135
           A+EL+A K KLERLR D E TEK+L+ERD  +++    +LQR E Q+ LE++VDRLFRLK
Sbjct: 64  AEELSAFKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVDRLFRLK 123

Query: 136 ELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEES-------IDENSSSDSS 186
           EL +Y  +ISP RSLR KE+++      F   E  DEE S       I+E SS+ S+
Sbjct: 124 ELHAYSSKISPIRSLRAKEQQEKMRRFTFAGEEQPDEESSVEIANGPIEEESSTKSN 164

[Close]
BLAST of Csor.00g127730 vs. TAIR 10
Match: AT5G01910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 96.7 bits (239), Expect = 3.2e-20
Identity = 66/142 (46.48%), Postives = 89/142 (62.68%), Query Frame = 0 

Query: 16  SGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPPIHATATRTESCDLSL 75
           SGR+ LQPRN        + +  K  A  V+ P + +  KEN+           S D SL
Sbjct: 4   SGRKALQPRN--------IYQTPKEDAFFVK-PKAAEKLKENL-------NLETSIDASL 63

Query: 76  ADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEVQRDLEMEVDRLFRLK 135
           A+EL+A K KLERLR D E TEK+L+ERD  +++    +LQR E Q+ LE++VDRLFRLK
Sbjct: 64  AEELSAFKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVDRLFRLK 123

Query: 136 ELRSYCMRISPKRSLREKEREK 158
           EL +Y  +ISP RSLR KE+++
Sbjct: 124 ELHAYSSKISPIRSLRAKEQQE 129

The following BLAST results are available for this feature:
BLAST of Csor.00g127730 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g127730 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6595551.17.31e-190100.00hypothetical protein SDJN03_12104, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7027530.11.79e-118100.00hypothetical protein SDJN02_11544, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022924949.12.43e-11698.93high mobility group B protein 6-like [Cucurbita moschata][more]
XP_023517579.11.14e-11497.86high mobility group B protein 6-like [Cucurbita pepo subsp. pepo] >XP_023518497.... [more]
XP_022966463.13.11e-11295.72high mobility group B protein 6-like [Cucurbita maxima][more]
BLAST of Csor.00g127730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EAP11.17e-11698.93high mobility group B protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC1114323... [more]
A0A6J1HS841.51e-11295.72high mobility group B protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111466110... [more]
A0A5A7SJQ27.97e-8477.78High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3CEI71.13e-8377.78High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A1S3CJ781.13e-8377.78high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=... [more]
BLAST of Csor.00g127730 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G01910.12.2e-2143.50unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bac... [more]
AT5G01910.23.2e-2046.48unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR36790MYELIN TRANSCRIPTION FACTORcoord: 12..186

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g127730.m01Csor.00g127730.m01mRNA