Csor.00g127500 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g127500
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell;
Location	Csor_Chr07: 6808823 .. 6809207 (-)
RNA-Seq Expression	Csor.00g127500
Synteny	Csor.00g127500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGAGAAGGAGAGGGAGCGGCGGCAGCGGCTGCGTCGTCTTCTCAGGCCAACAGACCTGGTAGGAGGGTGGATCCGTTGCTCGTAACTTGCAGGTTTTTCAGTATTGTAACAACTCTCACTGCTATTCTCTGCATTGTTTCCAATGTCATCTCTGCGATTCGATCCTTTAAGAACAACTCCGATGTAATCTCTCTGTTTCTGTTGCGTCTTTGTTCGGTATTTTTTTGAATCTAATGCTGTATCACGCGGTTGTTTGAAATTTTGGCAGATATTCGATGGTATATTTCGTTGTTATGCAGTTGTGATCTCATTCTTCGTGGTTATTGCTGAGACGGAATGGGAGTTTATTCTTAAGAACTGGCAGGTTTTTTGCGTCTGA

mRNA sequence

ATGGACAGAGAAGGAGAGGGAGCGGCGGCAGCGGCTGCGTCGTCTTCTCAGGCCAACAGACCTGGTAGGAGGGTGGATCCGTTGCTCGTAACTTGCAGGTTTTTCAGTATTGTAACAACTCTCACTGCTATTCTCTGCATTGTTTCCAATGTCATCTCTGCGATTCGATCCTTTAAGAACAACTCCGATATATTCGATGGTATATTTCGTTGTTATGCAGTTGTGATCTCATTCTTCGTGGTTATTGCTGAGACGGAATGGGAGTTTATTCTTAAGAACTGGCAGGTTTTTTGCGTCTGA

Coding sequence (CDS)

ATGGACAGAGAAGGAGAGGGAGCGGCGGCAGCGGCTGCGTCGTCTTCTCAGGCCAACAGACCTGGTAGGAGGGTGGATCCGTTGCTCGTAACTTGCAGGTTTTTCAGTATTGTAACAACTCTCACTGCTATTCTCTGCATTGTTTCCAATGTCATCTCTGCGATTCGATCCTTTAAGAACAACTCCGATATATTCGATGGTATATTTCGTTGTTATGCAGTTGTGATCTCATTCTTCGTGGTTATTGCTGAGACGGAATGGGAGTTTATTCTTAAGAACTGGCAGGTTTTTTGCGTCTGA

Protein sequence

MDREGEGAAAAAASSSQANRPGRRVDPLLVTCRFFSIVTTLTAILCIVSNVISAIRSFKNNSDIFDGIFRCYAVVISFFVVIAETEWEFILKNWQVFCV

Homology

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BLAST of Csor.00g127500 vs. NCBI nr
Match: KAG6595529.1 (hypothetical protein SDJN03_12082, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189 bits (481), Expect = 1.76e-60
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MDREGEGAAAAAASSSQANRPGRRVDPLLVTCRFFSIVTTLTAILCIVSNVISAIRSFKN 60
          MDREGEGAAAAAASSSQANRPGRRVDPLLVTCRFFSIVTTLTAILCIVSNVISAIRSFKN
Sbjct: 1  MDREGEGAAAAAASSSQANRPGRRVDPLLVTCRFFSIVTTLTAILCIVSNVISAIRSFKN 60

Query: 61 NSDIFDGIFRCYAVVISFFVVIAETEWEFILKNWQVFCV 99
          NSDIFDGIFRCYAVVISFFVVIAETEWEFILKNWQVFCV
Sbjct: 61 NSDIFDGIFRCYAVVISFFVVIAETEWEFILKNWQVFCV 99

[Close]

BLAST of Csor.00g127500 vs. NCBI nr
Match: KAG7027511.1 (hypothetical protein SDJN02_11525, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173 bits (439), Expect = 8.43e-53
Identity = 95/102 (93.14%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MDREGEGAAAAAA------SSSQANRPGRRVDPLLVTCRFFSIVTTLTAILCIVSNVISA 60
           MDREGEGAAAAAA      SSSQANR GRRVDPLLVTCRFFSIVTTLTAILCIVSNVISA
Sbjct: 1   MDREGEGAAAAAAAAAAAASSSQANRSGRRVDPLLVTCRFFSIVTTLTAILCIVSNVISA 60

Query: 61  IRSFKNNSDIFDGIFRCYAVVISFFVVIAETEWEFILKNWQV 96
           IRSFKNNSDIFDGIFRCYAVVISFFVVIAETEWEFILKNWQV
Sbjct: 61  IRSFKNNSDIFDGIFRCYAVVISFFVVIAETEWEFILKNWQV 102

[Close]

BLAST of Csor.00g127500 vs. NCBI nr
Match: XP_022922529.1 (uncharacterized protein LOC111430498 [Cucurbita moschata] >KAG6576880.1 hypothetical protein SDJN03_24454, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014903.1 hypothetical protein SDJN02_22534 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158 bits (399), Expect = 1.24e-46
Identity = 84/102 (82.35%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MDREGEGAAAA------AASSSQANRPGRRVDPLLVTCRFFSIVTTLTAILCIVSNVISA 60
           M+R GEGAAA       AASSSQ +RPGRRVDPLLVTCRFFS+VT LTAILCIVSNVI+A
Sbjct: 1   MERGGEGAAAGTTAAATAASSSQTSRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAA 60

Query: 61  IRSFKNNSDIFDGIFRCYAVVISFFVVIAETEWEFILKNWQV 96
           IRSFKN SDIFDGIFRCYAVVI+FFVV+AETEWEFILKNW+V
Sbjct: 61  IRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKV 102

[Close]

BLAST of Csor.00g127500 vs. NCBI nr
Match: XP_023552582.1 (uncharacterized protein LOC111810200 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157 bits (398), Expect = 1.76e-46
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MDREGEGAA------AAAASSSQANRPGRRVDPLLVTCRFFSIVTTLTAILCIVSNVISA 60
           M+R GEGAA      A AASSSQ +RPGRRVDPLLVTCRFFS+VT LTAILCIVSNV++A
Sbjct: 1   MERGGEGAATGTTAAATAASSSQTSRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVVAA 60

Query: 61  IRSFKNNSDIFDGIFRCYAVVISFFVVIAETEWEFILKNWQV 96
           IRSFKN SDIFDGIFRCYAVVI+FFVV+AETEWEFILKNW+V
Sbjct: 61  IRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKV 102

[Close]

BLAST of Csor.00g127500 vs. NCBI nr
Match: XP_023552581.1 (uncharacterized protein LOC111810200 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157 bits (398), Expect = 2.36e-46
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MDREGEGAA------AAAASSSQANRPGRRVDPLLVTCRFFSIVTTLTAILCIVSNVISA 60
           M+R GEGAA      A AASSSQ +RPGRRVDPLLVTCRFFS+VT LTAILCIVSNV++A
Sbjct: 1   MERGGEGAATGTTAAATAASSSQTSRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVVAA 60

Query: 61  IRSFKNNSDIFDGIFRCYAVVISFFVVIAETEWEFILKNWQV 96
           IRSFKN SDIFDGIFRCYAVVI+FFVV+AETEWEFILKNW+V
Sbjct: 61  IRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKV 102

[Close]

BLAST of Csor.00g127500 vs. ExPASy TrEMBL
Match: A0A6J1E3M8 (uncharacterized protein LOC111430498 OS=Cucurbita moschata OX=3662 GN=LOC111430498 PE=4 SV=1)

HSP 1 Score: 158 bits (399), Expect = 6.00e-47
Identity = 84/102 (82.35%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MDREGEGAAAA------AASSSQANRPGRRVDPLLVTCRFFSIVTTLTAILCIVSNVISA 60
           M+R GEGAAA       AASSSQ +RPGRRVDPLLVTCRFFS+VT LTAILCIVSNVI+A
Sbjct: 1   MERGGEGAAAGTTAAATAASSSQTSRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAA 60

Query: 61  IRSFKNNSDIFDGIFRCYAVVISFFVVIAETEWEFILKNWQV 96
           IRSFKN SDIFDGIFRCYAVVI+FFVV+AETEWEFILKNW+V
Sbjct: 61  IRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKV 102

[Close]

BLAST of Csor.00g127500 vs. ExPASy TrEMBL
Match: A0A6J1J849 (uncharacterized protein LOC111482612 OS=Cucurbita maxima OX=3661 GN=LOC111482612 PE=4 SV=1)

HSP 1 Score: 156 bits (395), Expect = 2.43e-46
Identity = 84/102 (82.35%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 1   MDREGEGAAAA------AASSSQANRPGRRVDPLLVTCRFFSIVTTLTAILCIVSNVISA 60
           M+R GEGAAA       AASSSQ  RPGRRVDPLLVTCRFFS+VT LTAILCIVSNVI+A
Sbjct: 1   MERGGEGAAAGTTAAATAASSSQTIRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAA 60

Query: 61  IRSFKNNSDIFDGIFRCYAVVISFFVVIAETEWEFILKNWQV 96
           IRSFKN SDIFDGIFRCYAVVI+FFVV+AETEWEFILKNW+V
Sbjct: 61  IRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKV 102

[Close]

BLAST of Csor.00g127500 vs. ExPASy TrEMBL
Match: A0A1S3BY74 (uncharacterized protein LOC103494861 OS=Cucumis melo OX=3656 GN=LOC103494861 PE=4 SV=1)

HSP 1 Score: 149 bits (377), Expect = 1.27e-43
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 1   MDREGEGAAAAAASSS-----QANRPGRRVDPLLVTCRFFSIVTTLTAILCIVSNVISAI 60
           M+R GEGA AA++SSS     Q  RP R VDPLLVTCRFFS++T LTAILCIVSNVISAI
Sbjct: 1   MERNGEGAPAASSSSSSSSSSQITRPRRSVDPLLVTCRFFSVITALTAILCIVSNVISAI 60

Query: 61  RSFKNNSDIFDGIFRCYAVVISFFVVIAETEWEFILKNWQV 96
           RSFKN SDIFDGIFRCYAVVI+FFVV+AETEWEFI KNW+V
Sbjct: 61  RSFKNQSDIFDGIFRCYAVVITFFVVLAETEWEFIFKNWKV 101

[Close]

BLAST of Csor.00g127500 vs. ExPASy TrEMBL
Match: A0A0A0KYH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182250 PE=4 SV=1)

HSP 1 Score: 146 bits (369), Expect = 2.19e-42
Identity = 78/103 (75.73%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   MDREGEGAAAAA-------ASSSQANRPGRRVDPLLVTCRFFSIVTTLTAILCIVSNVIS 60
           M+R GEGA A A       +SSSQ  RP R VDPLLVTCRFFS++T LTAILCIVSNVIS
Sbjct: 1   MERNGEGAPALAPAASSSSSSSSQITRPRRSVDPLLVTCRFFSVITALTAILCIVSNVIS 60

Query: 61  AIRSFKNNSDIFDGIFRCYAVVISFFVVIAETEWEFILKNWQV 96
           AIRSFKN SDIFDGIFRCYAVVI+FF V+AETEWEFI KNW+V
Sbjct: 61  AIRSFKNQSDIFDGIFRCYAVVIAFFAVLAETEWEFIFKNWKV 103

[Close]

BLAST of Csor.00g127500 vs. ExPASy TrEMBL
Match: A0A6J1D697 (uncharacterized protein LOC111017704 OS=Momordica charantia OX=3673 GN=LOC111017704 PE=4 SV=1)

HSP 1 Score: 130 bits (328), Expect = 3.95e-36
Identity = 65/89 (73.03%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 8   AAAAAASSSQANRPGRRVDPLLVTCRFFSIVTTLTAILCIVSNVISAIRSFKNNSDIFDG 67
           A+++++SSS   R GRRVDPLLVTCRFFS++T LTAILCIV NVISA+RSFK+ +DIFDG
Sbjct: 18  ASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVNVISAVRSFKDKADIFDG 77

Query: 68  IFRCYAVVISFFVVIAETEWEFILKNWQV 96
           IFRCYAV+I+ FVV+AETEWEFI+K W+V
Sbjct: 78  IFRCYAVLIASFVVLAETEWEFIIKFWKV 106

[Close]

BLAST of Csor.00g127500 vs. TAIR 10
Match: AT4G33625.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 59 Blast hits to 59 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 104.0 bits (258), Expect = 7.1e-23
Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1  MDR--EGEGAAAAAASSSQANRPGRRVDPLLVTCRFFSIVTTLTAILCIVSNVISAIRSF 60
          MDR  E E + A  +S S   + G R DP LV CR FS+VT+L AILC+V NV++A+RSF
Sbjct: 1  MDRTEEIEESPAGPSSGSAKLKLGNRADPFLVVCRCFSLVTSLIAILCVVVNVLAAVRSF 60

Query: 61 KNNSDIFDGIFRCYAVVISFFVVIAETEWEFILK 93
          +++ D+FDGIFRCYAVVI+ FVV+ ETEW FILK
Sbjct: 61 RDSHDLFDGIFRCYAVVIACFVVLVETEWGFILK 94

[Close]

BLAST of Csor.00g127500 vs. TAIR 10
Match: AT4G33625.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 104.0 bits (258), Expect = 7.1e-23
Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1  MDR--EGEGAAAAAASSSQANRPGRRVDPLLVTCRFFSIVTTLTAILCIVSNVISAIRSF 60
          MDR  E E + A  +S S   + G R DP LV CR FS+VT+L AILC+V NV++A+RSF
Sbjct: 1  MDRTEEIEESPAGPSSGSAKLKLGNRADPFLVVCRCFSLVTSLIAILCVVVNVLAAVRSF 60

Query: 61 KNNSDIFDGIFRCYAVVISFFVVIAETEWEFILK 93
          +++ D+FDGIFRCYAVVI+ FVV+ ETEW FILK
Sbjct: 61 RDSHDLFDGIFRCYAVVIACFVVLVETEWGFILK 94

The following BLAST results are available for this feature:

BLAST of Csor.00g127500 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g127500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595529.1	1.76e-60	100.00	hypothetical protein SDJN03_12082, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7027511.1	8.43e-53	93.14	hypothetical protein SDJN02_11525, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022922529.1	1.24e-46	82.35	uncharacterized protein LOC111430498 [Cucurbita moschata] >KAG6576880.1 hypothet...	[more]
XP_023552582.1	1.76e-46	81.37	uncharacterized protein LOC111810200 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023552581.1	2.36e-46	81.37	uncharacterized protein LOC111810200 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g127500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E3M8	6.00e-47	82.35	uncharacterized protein LOC111430498 OS=Cucurbita moschata OX=3662 GN=LOC1114304...	[more]
A0A6J1J849	2.43e-46	82.35	uncharacterized protein LOC111482612 OS=Cucurbita maxima OX=3661 GN=LOC111482612...	[more]
A0A1S3BY74	1.27e-43	78.22	uncharacterized protein LOC103494861 OS=Cucumis melo OX=3656 GN=LOC103494861 PE=...	[more]
A0A0A0KYH6	2.19e-42	75.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182250 PE=4 SV=1	[more]
A0A6J1D697	3.95e-36	73.03	uncharacterized protein LOC111017704 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Csor.00g127500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33625.1	7.1e-23	59.57	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G33625.2	7.1e-23	59.57	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR34965	OS07G0118300 PROTEIN	coord: 1..97
None	No IPR available	PANTHER	PTHR34965:SF1	OS07G0118300 PROTEIN	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g127500.m01	Csor.00g127500.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane