Csor.00g127480 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g127480
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell;
LocationCsor_Chr07: 6803223 .. 6805718 (-)
RNA-Seq ExpressionCsor.00g127480
SyntenyCsor.00g127480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCACAAGGTGGATGGAAAGGTGGCTCATGCGGACCATGGTCTTTTTTTCCTTGCATAGAATTTCAAATAAGCTGCAATAAAATTATCTTTTACTTCGTTTATGCTTAAAGGTATTGGAGAACCAAAATTCAAGTCACTCTTGGTCTTCTTCTGCTGCTGTCTTCAAAACGGGGGATTCTGAAAATTTATTAAATGGGACAGGAACAATAATAGTATTAACCAGCTTCAAAATGCACAAGGGGGAGAAGGTACCTGATCCTTTGAAATTAAAGGCACTTGCTCATGCAGATTAGGAGCAATAATTAAAGGTTTTTACTATTCACATCCTGTATTAGTAAAGCCTCAACTTTTATACTTGTGTTTCACTTAGTTTCAATCCAACAATTATATGATTTCTTCATGCACTTGCTCCCTAGCAAGTTAGCCCAGCCAAAATCGCATTACCAGTGGTGCAACGAGTCTTTCATGAACTTTTTTCATATTTGTGCGTTAATGGTTTTTATTGATAATACAAGGTTGGAGAAAAACATTAAATACATCAAGAAACAGAGTGTCGGTAGTCGGTAGACCACAAGGAAAAAGGAATCAAACAGTTGAAAGTTGACAATATTTTCTAGGGTTTGCTTACGTCAGTTTTTCATGTATGTCTTTAGAGGTTCATGATATGGATGTCATTTATTTGGTTCTCGTGGATTTGTCTCAAAATCTTGATATCCATGATACTTTCTGTAATTGCCTTTCTTCATCCCAAGTATGTCTTTGACAGCACTGAATTTTGTTTTTAGTGTGTGTTAGACTAATTACTGGAGGTGCAAGTTAATTCATGAACCTTCTGTCCACCAAGATGCTAAGTCATATGTAAATATGTGCTGGGCTATCATACATCAGTGAACTAAATCATCATCCGTTTGAAAGTAATATGAATCAAGGCATTAATCATGCAATATTAACTTCAAGAAAGATGTGAAGAAAATGTTGTTTAAATTATCACAAGATGTTACAATTCATGCCACATTAAAAAAGAATGAAACTTCATTTATTCACAAAATTTGGGTCTATGATAATTTAGAGTTATGGTGTTTCTTTAATGTATTTTAAAGCTACATAGTGGCTAATTAGGGTCATAAAATATACATAGTGGCTAATTATGGTCATAAAATATGAAAGTTACAACTCTTGGAACACCTTATGGAAAGTTAAGGGTTTTAATTTTGATGCTATATAAAGTCATGTATGTTGTCGAAGACTTGGAAAATGGAGTAAAAAGAACCTTTGTGTTTTCCTTTAGCCCATAGCTAAGTTTATTTGCAATTCTATGTAGTTTAGGTGGCATGTTTAGAATCATTCAAGCTTGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAAACAAGTGTTCTTGCCTTGAGATATTCGATCAACAGAGTAATCCGAATCTTACTTCCCTTCCAGTGATTCCTTATCATTTGGTATCAGAGTTTTTCCTTAGATTGATTTCTTATCAAAAAGTTTGCCTATGGTGTATAAAACATGTGATTGGATCTTTGTTTGCATGGATAACGCTTAAATGATTCTGGTTTTTCCTACAAATTTCAAGGGAATAATGTGCATTGGGTTTCTCAAACGTGCTCGTGAAGAGAAAGAGACCGCAAAGGACAGGATTGTCAATGATCTTCAGGTAAGCTCTTTCACTGGATAGTTCTATAACTCATTGGGGAGCACGAATAGATACTAATAATGTTTTGTTGCCATTTTTTTAAATGAAAACATTAAAGCATATATATGTCATAATATATTGTTTGAGATTATAAGCAACTTCTCCAATTTCAGTTGATTACCATTAGCTGTGGAGTTTATTTTTCTCTGGTTTATTGGCATTGGCATTGTGATGTCCCACGTTGATTGAGGAGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCTCCTAGCAGACGCGTTTTAAAACCTTGAGGGGAAGCCCAAAAAAGAGAATATCTGCTAGCAGTGGATTTAGTCAATTGTCTTGATCGTGGGATATCATTGAGAAATAGGAATCCGTGTTATCAAAGGATTTCCTGCGATTATTTCTCGTATGGAATGGATCTGGACCGTTAGATAGAGAGTTTTAGTTTACTGGAAATTTGAATTTCAGCACAAACAGAGCATCGTTTGGTGACAATTTTGTTTCCAAAATATCTGTTTTTAAAAATTAAGCTCGTTAATGTCCATAATTTTCTTTCATCTTTTTAACGCCGCACTACTTTCTTTTGTTCTTAAAATTTGACCCAGAGTACTGTTGTTAGTCTTTTCTCATTATCATAGGGCTCCCCTCTGTGTGATTTACATGAACCAAGAATTCTTAGTTTATTATTCAACCATTTTTACACACACAATTTGATCTTGAGGAAGCCCTGAATTTGTTGTAGGATTTGGAAAGTCAAAAACAAGAACTTGAACGGTTGCTCATTTCAGAAACTGTTTGA

mRNA sequence

ATGAACCACAAGGTGGATGGAAAGGTATTGGAGAACCAAAATTCAAGTCACTCTTGGTCTTCTTCTGCTGCTGTCTTCAAAACGGGGGATTCTGAAAATTTATTAAATGGGACAGGAACAATAATAGTATTAACCAGCTTCAAAATGCACAAGGGGGAGAAGGGAATAATGTGCATTGGGTTTCTCAAACGTGCTCGTGAAGAGAAAGAGACCGCAAAGGACAGGATTGTCAATGATCTTCAGGATTTGGAAAGTCAAAAACAAGAACTTGAACGGTTGCTCATTTCAGAAACTGTTTGA

Coding sequence (CDS)

ATGAACCACAAGGTGGATGGAAAGGTATTGGAGAACCAAAATTCAAGTCACTCTTGGTCTTCTTCTGCTGCTGTCTTCAAAACGGGGGATTCTGAAAATTTATTAAATGGGACAGGAACAATAATAGTATTAACCAGCTTCAAAATGCACAAGGGGGAGAAGGGAATAATGTGCATTGGGTTTCTCAAACGTGCTCGTGAAGAGAAAGAGACCGCAAAGGACAGGATTGTCAATGATCTTCAGGATTTGGAAAGTCAAAAACAAGAACTTGAACGGTTGCTCATTTCAGAAACTGTTTGA

Protein sequence

MNHKVDGKVLENQNSSHSWSSSAAVFKTGDSENLLNGTGTIIVLTSFKMHKGEKGIMCIGFLKRAREEKETAKDRIVNDLQDLESQKQELERLLISETV
Homology
[Close]
BLAST of Csor.00g127480 vs. NCBI nr
Match: KAG6595527.1 (hypothetical protein SDJN03_12080, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188 bits (478), Expect = 5.05e-60
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MNHKVDGKVLENQNSSHSWSSSAAVFKTGDSENLLNGTGTIIVLTSFKMHKGEKGIMCIG 60
          MNHKVDGKVLENQNSSHSWSSSAAVFKTGDSENLLNGTGTIIVLTSFKMHKGEKGIMCIG
Sbjct: 1  MNHKVDGKVLENQNSSHSWSSSAAVFKTGDSENLLNGTGTIIVLTSFKMHKGEKGIMCIG 60

Query: 61 FLKRAREEKETAKDRIVNDLQDLESQKQELERLLISETV 99
          FLKRAREEKETAKDRIVNDLQDLESQKQELERLLISETV
Sbjct: 61 FLKRAREEKETAKDRIVNDLQDLESQKQELERLLISETV 99

[Close]
BLAST of Csor.00g127480 vs. NCBI nr
Match: XP_038905258.1 (uncharacterized protein LOC120091338 isoform X1 [Benincasa hispida])

HSP 1 Score: 75.5 bits (184), Expect = 2.64e-14
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 55  GIMCIGFLKRAREEKETAKDRIVNDLQDLESQKQELERLLISETV 99
           GI+CIGFLKRAREEKETAKDR+V DLQ+LE QKQELE+LLISETV
Sbjct: 150 GILCIGFLKRAREEKETAKDRVVKDLQELERQKQELEQLLISETV 194

[Close]
BLAST of Csor.00g127480 vs. NCBI nr
Match: XP_038905259.1 (uncharacterized protein LOC120091338 isoform X2 [Benincasa hispida])

HSP 1 Score: 75.5 bits (184), Expect = 2.64e-14
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 55  GIMCIGFLKRAREEKETAKDRIVNDLQDLESQKQELERLLISETV 99
           GI+CIGFLKRAREEKETAKDR+V DLQ+LE QKQELE+LLISETV
Sbjct: 150 GILCIGFLKRAREEKETAKDRVVKDLQELERQKQELEQLLISETV 194

[Close]
BLAST of Csor.00g127480 vs. NCBI nr
Match: XP_008454462.1 (PREDICTED: uncharacterized protein LOC103494861 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 3.09e-13
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 55  GIMCIGFLKRAREEKETAKDRIVNDLQDLESQKQELERLLISETV 99
           GI+CIGFLKRARE+KETAKD++V DLQ+LE QKQELE+LLISETV
Sbjct: 154 GILCIGFLKRAREKKETAKDKVVKDLQELERQKQELEQLLISETV 198

[Close]
BLAST of Csor.00g127480 vs. NCBI nr
Match: XP_004147506.1 (uncharacterized protein LOC101214901 [Cucumis sativus] >KGN53894.1 hypothetical protein Csa_011853 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 3.20e-13
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 55  GIMCIGFLKRAREEKETAKDRIVNDLQDLESQKQELERLLISETV 99
           GI+CIGFLKRARE+KETAKD++V DLQ+LE QKQELE+LLISETV
Sbjct: 156 GILCIGFLKRAREKKETAKDKVVKDLQELERQKQELEQLLISETV 200

[Close]
BLAST of Csor.00g127480 vs. ExPASy TrEMBL
Match: A0A1S3BY74 (uncharacterized protein LOC103494861 OS=Cucumis melo OX=3656 GN=LOC103494861 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.49e-13
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 55  GIMCIGFLKRAREEKETAKDRIVNDLQDLESQKQELERLLISETV 99
           GI+CIGFLKRARE+KETAKD++V DLQ+LE QKQELE+LLISETV
Sbjct: 154 GILCIGFLKRAREKKETAKDKVVKDLQELERQKQELEQLLISETV 198

[Close]
BLAST of Csor.00g127480 vs. ExPASy TrEMBL
Match: A0A0A0KYH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182250 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.55e-13
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 55  GIMCIGFLKRAREEKETAKDRIVNDLQDLESQKQELERLLISETV 99
           GI+CIGFLKRARE+KETAKD++V DLQ+LE QKQELE+LLISETV
Sbjct: 156 GILCIGFLKRAREKKETAKDKVVKDLQELERQKQELEQLLISETV 200

[Close]
BLAST of Csor.00g127480 vs. ExPASy TrEMBL
Match: A0A6J1J849 (uncharacterized protein LOC111482612 OS=Cucurbita maxima OX=3661 GN=LOC111482612 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.21e-13
Identity = 36/45 (80.00%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 55  GIMCIGFLKRAREEKETAKDRIVNDLQDLESQKQELERLLISETV 99
           GI+CIGFLKRAREEKET+KDR+V DLQ+LE QKQELE+LLIS++V
Sbjct: 155 GILCIGFLKRAREEKETSKDRVVKDLQELERQKQELEQLLISDSV 199

[Close]
BLAST of Csor.00g127480 vs. ExPASy TrEMBL
Match: A0A6J1E3M8 (uncharacterized protein LOC111430498 OS=Cucurbita moschata OX=3662 GN=LOC111430498 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.21e-13
Identity = 36/45 (80.00%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 55  GIMCIGFLKRAREEKETAKDRIVNDLQDLESQKQELERLLISETV 99
           GI+CIGFLKRAREEKET+KDR+V DLQ+LE QKQELE+LLIS++V
Sbjct: 155 GILCIGFLKRAREEKETSKDRVVKDLQELERQKQELEQLLISDSV 199

[Close]
BLAST of Csor.00g127480 vs. ExPASy TrEMBL
Match: A0A6J1D697 (uncharacterized protein LOC111017704 OS=Momordica charantia OX=3673 GN=LOC111017704 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.72e-11
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 0 

Query: 34  LLNGTGTIIVLTSFKMHKGEKGIMCIGFLKRAREEKETAKDRIVNDLQDLESQKQELER- 93
           LL G G + V +         GI+C+GFLKRAREEKETAK+R V DLQ+LE QKQELER 
Sbjct: 147 LLLGCGAVYVAS---------GILCLGFLKRAREEKETAKERTVKDLQELERQKQELERR 204

Query: 94  LLISETV 99
           LLI+E+V
Sbjct: 207 LLIAESV 204

[Close]
BLAST of Csor.00g127480 vs. TAIR 10
Match: AT4G33625.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 59 Blast hits to 59 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 7.2e-07
Identity = 21/41 (51.22%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 55  GIMCIGFLKRAREEKETAKDRIVNDLQDLESQKQELERLLI 96
           G++CIGFLKRAR++KE ++++ V DL+++  +K+ELE+LL+
Sbjct: 151 GVLCIGFLKRARQQKEVSREQAVKDLEEIARRKEELEQLLL 191

[Close]
BLAST of Csor.00g127480 vs. TAIR 10
Match: AT4G33625.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-05
Identity = 21/41 (51.22%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 55  GIMCIGFLKRAREEKETAKDRIVNDLQDLESQKQELERLLI 96
           G++CIGFLKRAR++KE ++++ V DL ++  +K+ELE+LL+
Sbjct: 151 GVLCIGFLKRARQQKEVSREQAVKDL-EIARRKEELEQLLL 190

The following BLAST results are available for this feature:
BLAST of Csor.00g127480 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g127480 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6595527.15.05e-60100.00hypothetical protein SDJN03_12080, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038905258.12.64e-1486.67uncharacterized protein LOC120091338 isoform X1 [Benincasa hispida][more]
XP_038905259.12.64e-1486.67uncharacterized protein LOC120091338 isoform X2 [Benincasa hispida][more]
XP_008454462.13.09e-1382.22PREDICTED: uncharacterized protein LOC103494861 [Cucumis melo][more]
XP_004147506.13.20e-1382.22uncharacterized protein LOC101214901 [Cucumis sativus] >KGN53894.1 hypothetical ... [more]
BLAST of Csor.00g127480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BY741.49e-1382.22uncharacterized protein LOC103494861 OS=Cucumis melo OX=3656 GN=LOC103494861 PE=... [more]
A0A0A0KYH61.55e-1382.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182250 PE=4 SV=1[more]
A0A6J1J8494.21e-1380.00uncharacterized protein LOC111482612 OS=Cucurbita maxima OX=3661 GN=LOC111482612... [more]
A0A6J1E3M84.21e-1380.00uncharacterized protein LOC111430498 OS=Cucurbita moschata OX=3662 GN=LOC1114304... [more]
A0A6J1D6973.72e-1161.19uncharacterized protein LOC111017704 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
BLAST of Csor.00g127480 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G33625.17.2e-0751.22FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT4G33625.22.3e-0551.22FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 62..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g127480.m01Csor.00g127480.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane