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Csor.00g126360 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGAAGAAGAAGAAGAAGAAGAAGATAAGGTGGGCATTGAAACCAGAGAGCCGCTCGGAGTTCAATCGGATTGAAGAAATCCACTAATGTGCTGATTGCCGTTTGGTGAGTGAGAATTTTGAAGAGAGGAGATAATGGCGCACACTTTAGCATTGCCCGTCGCTCCTTCGCTCTCCCTTATCTGCAATTCTCGAACCTCCAATCCTCTCTCTAACGCCATCTCCTTCCCCATTTCAAACCCTCGGGTAAATCTTCTCTTCTTTGGACTTCAACTATGGAGTTCCTTTCTTCAATTTTACCTTCTTCCTCCGTTCAATTACTTACTTCGGCTCTACAGTTTCCGCTTCGTGCTTTAATTTCATGTATTTTTTTCGATGTGGAGGGATTTTGCCAATTATATTTATCCTGCGGAACTTGGCTATTGTCTTCTTGATTTCATATTGTATCTGTTTCTTGATTTCTTCATTCCCTTTGCTTGTGAGTATTGCTGCTTGATTCTGTGAAACTATTATTACAGAACCTACTCTCAACTCAGCTTCTTCTTTTTTTTCTTTCGTTTGAATTTCCTTTTTGTGATGCTCTACACTCAGTTTTTCCGTAGTTTTTCCTCGGTTACAGTACTAGACTCTGCCTCTACACTTTCATTGAACAGTGTGATGAAACAAAAATTCCTGCGTTTCGTTTCCCTAATTGCTAGTGTCTAAATGAATCAAATTCAGGATCCTAATTCCCATTTTCCCTCACCCTTTCTGTGCATGATGGATTATAAAGATTAAGCAGATATAATTGGACAGAAAGAGTAGATTATGCCAACGAATGGCTGACCTTAAATGGAAATTTGACTTGCTAGTCTATGCTGGACAGGATAAAGTTTGTAACCCATTAGCTTAAGATTTTGAGTTGATTTAACTTGGTATCGGAGTAGGAGGTCCGGTGTTTAACTCCTACGAAGTTTCAAACTCACATGATATCCCTGTTTCTTCTTGAATGATTCCCTCATTTTTTGTTCCTTCAATTTTGAACCATTCAGGTTCCTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCTATACTCCCTTCAGTATATACATGGAATTGGGCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATCACCAAGGACTTAGCTGAGGAGGAACTCATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCTCTTTCTCTATCTCTGTGTGTGTGTGTGTGTGTGTGTGTTAGAATTACAAACGTTGGTTGCCTCTGTTACTTTTGTGAAGTGCTTAAAAATGTAATTGTTGGGTTTTGCAGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATCCAGGGGTTGCCATGCCGGGGGCAGCGAACGAAAAACAACTGCAGGACGTTGAAGGGTAAGAAGGTCGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGA ATGAAGAAGAAGAAGAAGAAGAAGAAGATAAGAGAGGAGATAATGGCGCACACTTTAGCATTGCCCGTCGCTCCTTCGCTCTCCCTTATCTGCAATTCTCGAACCTCCAATCCTCTCTCTAACGCCATCTCCTTCCCCATTTCAAACCCTCGGGTTCCTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCTATACTCCCTTCAGTATATACATGGAATTGGGCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATCACCAAGGACTTAGCTGAGGAGGAACTCATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATCCAGGGGTTGCCATGCCGGGGGCAGCGAACGAAAAACAACTGCAGGACGTTGAAGGGTAAGAAGGTCGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGA ATGAAGAAGAAGAAGAAGAAGAAGAAGATAAGAGAGGAGATAATGGCGCACACTTTAGCATTGCCCGTCGCTCCTTCGCTCTCCCTTATCTGCAATTCTCGAACCTCCAATCCTCTCTCTAACGCCATCTCCTTCCCCATTTCAAACCCTCGGGTTCCTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCTATACTCCCTTCAGTATATACATGGAATTGGGCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATCACCAAGGACTTAGCTGAGGAGGAACTCATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATCCAGGGGTTGCCATGCCGGGGGCAGCGAACGAAAAACAACTGCAGGACGTTGAAGGGTAAGAAGGTCGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGA MKKKKKKKKIREEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR Homology
BLAST of Csor.00g126360 vs. ExPASy Swiss-Prot
Match: P42732 (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1) HSP 1 Score: 249.2 bits (635), Expect = 3.5e-65 Identity = 128/169 (75.74%), Postives = 143/169 (84.62%), Query Frame = 0
BLAST of Csor.00g126360 vs. ExPASy Swiss-Prot
Match: P82163 (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 PE=1 SV=3) HSP 1 Score: 243.8 bits (621), Expect = 1.5e-63 Identity = 125/169 (73.96%), Postives = 148/169 (87.57%), Query Frame = 0
BLAST of Csor.00g126360 vs. ExPASy Swiss-Prot
Match: Q9CA19 (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=1 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 5.7e-31 Identity = 70/148 (47.30%), Postives = 96/148 (64.86%), Query Frame = 0
BLAST of Csor.00g126360 vs. ExPASy Swiss-Prot
Match: B1VAC3 (30S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 9.1e-29 Identity = 63/119 (52.94%), Postives = 92/119 (77.31%), Query Frame = 0
BLAST of Csor.00g126360 vs. ExPASy Swiss-Prot
Match: Q6YQZ7 (30S ribosomal protein S13 OS=Onion yellows phytoplasma (strain OY-M) OX=262768 GN=rpsM PE=3 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 1.5e-28 Identity = 63/119 (52.94%), Postives = 90/119 (75.63%), Query Frame = 0
BLAST of Csor.00g126360 vs. NCBI nr
Match: KAG6578995.1 (30S ribosomal protein S13, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 353 bits (906), Expect = 1.22e-122 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0
BLAST of Csor.00g126360 vs. NCBI nr
Match: XP_023550656.1 (30S ribosomal protein S13, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 341 bits (874), Expect = 1.11e-115 Identity = 174/177 (98.31%), Postives = 174/177 (98.31%), Query Frame = 0
BLAST of Csor.00g126360 vs. NCBI nr
Match: XP_022939154.1 (30S ribosomal protein S13, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 341 bits (874), Expect = 1.11e-115 Identity = 174/177 (98.31%), Postives = 174/177 (98.31%), Query Frame = 0
BLAST of Csor.00g126360 vs. NCBI nr
Match: KAG7016519.1 (30S ribosomal protein S13, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 339 bits (870), Expect = 3.19e-114 Identity = 172/175 (98.29%), Postives = 173/175 (98.86%), Query Frame = 0
BLAST of Csor.00g126360 vs. NCBI nr
Match: XP_022993180.1 (30S ribosomal protein S13, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 331 bits (849), Expect = 3.66e-114 Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
BLAST of Csor.00g126360 vs. ExPASy TrEMBL
Match: A0A6J1FGA3 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445150 PE=3 SV=1) HSP 1 Score: 341 bits (874), Expect = 5.36e-116 Identity = 174/177 (98.31%), Postives = 174/177 (98.31%), Query Frame = 0
BLAST of Csor.00g126360 vs. ExPASy TrEMBL
Match: A0A6J1JXU5 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111489278 PE=3 SV=1) HSP 1 Score: 331 bits (849), Expect = 1.77e-114 Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
BLAST of Csor.00g126360 vs. ExPASy TrEMBL
Match: A0A5A7TVL6 (30S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00390 PE=3 SV=1) HSP 1 Score: 313 bits (803), Expect = 7.09e-107 Identity = 156/170 (91.76%), Postives = 164/170 (96.47%), Query Frame = 0
BLAST of Csor.00g126360 vs. ExPASy TrEMBL
Match: A0A1S3CPR4 (30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408 PE=3 SV=1) HSP 1 Score: 309 bits (792), Expect = 8.69e-106 Identity = 154/167 (92.22%), Postives = 161/167 (96.41%), Query Frame = 0
BLAST of Csor.00g126360 vs. ExPASy TrEMBL
Match: A0A0A0KN28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1) HSP 1 Score: 301 bits (770), Expect = 1.96e-102 Identity = 151/167 (90.42%), Postives = 158/167 (94.61%), Query Frame = 0
BLAST of Csor.00g126360 vs. TAIR 10
Match: AT5G14320.1 (Ribosomal protein S13/S18 family ) HSP 1 Score: 249.2 bits (635), Expect = 2.5e-66 Identity = 128/169 (75.74%), Postives = 143/169 (84.62%), Query Frame = 0
BLAST of Csor.00g126360 vs. TAIR 10
Match: AT5G14320.2 (Ribosomal protein S13/S18 family ) HSP 1 Score: 148.3 bits (373), Expect = 6.0e-36 Identity = 79/114 (69.30%), Postives = 90/114 (78.95%), Query Frame = 0
BLAST of Csor.00g126360 vs. TAIR 10
Match: AT1G77750.1 (Ribosomal protein S13/S18 family ) HSP 1 Score: 135.6 bits (340), Expect = 4.0e-32 Identity = 70/148 (47.30%), Postives = 96/148 (64.86%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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