Csor.00g126360 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g126360
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	30S ribosomal protein S13
Location	Csor_Chr15: 3519753 .. 3521296 (-)
RNA-Seq Expression	Csor.00g126360
Synteny	Csor.00g126360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAAGAAGAAGAAGAAGAAGATAAGGTGGGCATTGAAACCAGAGAGCCGCTCGGAGTTCAATCGGATTGAAGAAATCCACTAATGTGCTGATTGCCGTTTGGTGAGTGAGAATTTTGAAGAGAGGAGATAATGGCGCACACTTTAGCATTGCCCGTCGCTCCTTCGCTCTCCCTTATCTGCAATTCTCGAACCTCCAATCCTCTCTCTAACGCCATCTCCTTCCCCATTTCAAACCCTCGGGTAAATCTTCTCTTCTTTGGACTTCAACTATGGAGTTCCTTTCTTCAATTTTACCTTCTTCCTCCGTTCAATTACTTACTTCGGCTCTACAGTTTCCGCTTCGTGCTTTAATTTCATGTATTTTTTTCGATGTGGAGGGATTTTGCCAATTATATTTATCCTGCGGAACTTGGCTATTGTCTTCTTGATTTCATATTGTATCTGTTTCTTGATTTCTTCATTCCCTTTGCTTGTGAGTATTGCTGCTTGATTCTGTGAAACTATTATTACAGAACCTACTCTCAACTCAGCTTCTTCTTTTTTTTCTTTCGTTTGAATTTCCTTTTTGTGATGCTCTACACTCAGTTTTTCCGTAGTTTTTCCTCGGTTACAGTACTAGACTCTGCCTCTACACTTTCATTGAACAGTGTGATGAAACAAAAATTCCTGCGTTTCGTTTCCCTAATTGCTAGTGTCTAAATGAATCAAATTCAGGATCCTAATTCCCATTTTCCCTCACCCTTTCTGTGCATGATGGATTATAAAGATTAAGCAGATATAATTGGACAGAAAGAGTAGATTATGCCAACGAATGGCTGACCTTAAATGGAAATTTGACTTGCTAGTCTATGCTGGACAGGATAAAGTTTGTAACCCATTAGCTTAAGATTTTGAGTTGATTTAACTTGGTATCGGAGTAGGAGGTCCGGTGTTTAACTCCTACGAAGTTTCAAACTCACATGATATCCCTGTTTCTTCTTGAATGATTCCCTCATTTTTTGTTCCTTCAATTTTGAACCATTCAGGTTCCTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCTATACTCCCTTCAGTATATACATGGAATTGGGCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATCACCAAGGACTTAGCTGAGGAGGAACTCATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCTCTTTCTCTATCTCTGTGTGTGTGTGTGTGTGTGTGTGTTAGAATTACAAACGTTGGTTGCCTCTGTTACTTTTGTGAAGTGCTTAAAAATGTAATTGTTGGGTTTTGCAGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATCCAGGGGTTGCCATGCCGGGGGCAGCGAACGAAAAACAACTGCAGGACGTTGAAGGGTAAGAAGGTCGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGA

mRNA sequence

ATGAAGAAGAAGAAGAAGAAGAAGAAGATAAGAGAGGAGATAATGGCGCACACTTTAGCATTGCCCGTCGCTCCTTCGCTCTCCCTTATCTGCAATTCTCGAACCTCCAATCCTCTCTCTAACGCCATCTCCTTCCCCATTTCAAACCCTCGGGTTCCTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCTATACTCCCTTCAGTATATACATGGAATTGGGCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATCACCAAGGACTTAGCTGAGGAGGAACTCATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATCCAGGGGTTGCCATGCCGGGGGCAGCGAACGAAAAACAACTGCAGGACGTTGAAGGGTAAGAAGGTCGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGA

Coding sequence (CDS)

ATGAAGAAGAAGAAGAAGAAGAAGAAGATAAGAGAGGAGATAATGGCGCACACTTTAGCATTGCCCGTCGCTCCTTCGCTCTCCCTTATCTGCAATTCTCGAACCTCCAATCCTCTCTCTAACGCCATCTCCTTCCCCATTTCAAACCCTCGGGTTCCTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCTATACTCCCTTCAGTATATACATGGAATTGGGCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATCACCAAGGACTTAGCTGAGGAGGAACTCATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATCCAGGGGTTGCCATGCCGGGGGCAGCGAACGAAAAACAACTGCAGGACGTTGAAGGGTAAGAAGGTCGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGA

Protein sequence

MKKKKKKKKIREEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR

Homology

[Close]

BLAST of Csor.00g126360 vs. ExPASy Swiss-Prot
Match: P42732 (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.5e-65
Identity = 128/169 (75.74%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 15  MAHTLALPVAPSLSLICNSRTSNPLS-NAISFPISN-PRVPGLQIKCVRVGGVEIPNNKR 74
           MA  +A+PVA SLSLICN   SNPLS N ++ P SN P    L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 75  VLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNAL 134
           + YSLQYIHGIGR  A++IL DL +ENKITKD+AEEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 135 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 182
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]

BLAST of Csor.00g126360 vs. ExPASy Swiss-Prot
Match: P82163 (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 PE=1 SV=3)

HSP 1 Score: 243.8 bits (621), Expect = 1.5e-63
Identity = 125/169 (73.96%), Postives = 148/169 (87.57%), Query Frame = 0


Query: 15  MAHTLALPVAPSLSLICNSRTSNPL-SNAISF-PISNPRVPGLQIKCVRVGGVEIPNNKR 74
           MAHTLA PVAPS+SLICN++ S  L S++++F P++     GL IKCVRVG VEIPNNKR
Sbjct: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLAFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60

Query: 75  VLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNAL 134
           V YSLQYIHGIGR+ A++IL DL +ENK+TK+L+E+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120

Query: 135 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKVAIAGKKKAP 181
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GK+V IAGKKK P
Sbjct: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPP 169

[Close]

BLAST of Csor.00g126360 vs. ExPASy Swiss-Prot
Match: Q9CA19 (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.7e-31
Identity = 70/148 (47.30%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 34  RTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILF 93
           R++  L +     + N    GL+++ +RVG  E+PNNK +   LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 94  DLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP 153
            L + NK+ +DL  +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 154 CRGQRTKNNCRTLKGKKVAIAGKKKAPR 182
           CRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]

BLAST of Csor.00g126360 vs. ExPASy Swiss-Prot
Match: B1VAC3 (30S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.1e-29
Identity = 63/119 (52.94%), Postives = 92/119 (77.31%), Query Frame = 0


Query: 61  RVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKI-TKDLAEEELISIRDEVSK 120
           R+ G++IP++KRV+ +L YI+G+G+  ++KIL +LN+ + I  K+L E++L S+R E++K
Sbjct: 3   RIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITK 62

Query: 121 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 179
           Y +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ+T+NN  T+KGK  +IAGKKK
Sbjct: 63  YSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121

[Close]

BLAST of Csor.00g126360 vs. ExPASy Swiss-Prot
Match: Q6YQZ7 (30S ribosomal protein S13 OS=Onion yellows phytoplasma (strain OY-M) OX=262768 GN=rpsM PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-28
Identity = 63/119 (52.94%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 61  RVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKI-TKDLAEEELISIRDEVSK 120
           R+ G++IP++KRV+ +L YI+G+G   + KIL +LN++  I  K+L E++L ++R E++K
Sbjct: 3   RIAGIDIPSDKRVVIALTYIYGLGNKLSHKILNELNIDQNIRVKNLTEQQLSALRSEITK 62

Query: 121 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 179
           Y +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ+T+NN  T+KGK  AIAGKKK
Sbjct: 63  YNVEGDLRREVTLNIKRLMEIGAYRGLRHRKGLPVRGQKTRNNAHTVKGKPKAIAGKKK 121

[Close]

BLAST of Csor.00g126360 vs. NCBI nr
Match: KAG6578995.1 (30S ribosomal protein S13, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 353 bits (906), Expect = 1.22e-122
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MKKKKKKKKIREEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCV 60
           MKKKKKKKKIREEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCV
Sbjct: 1   MKKKKKKKKIREEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCV 60

Query: 61  RVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKY 120
           RVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKY
Sbjct: 61  RVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKY 120

Query: 121 MIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 180
           MIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP
Sbjct: 121 MIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 180

[Close]

BLAST of Csor.00g126360 vs. NCBI nr
Match: XP_023550656.1 (30S ribosomal protein S13, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 341 bits (874), Expect = 1.11e-115
Identity = 174/177 (98.31%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 5   KKKKKIREEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGG 64
           KKK   REEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGG
Sbjct: 143 KKKASRREEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGG 202

Query: 65  VEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEG 124
           VEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEG
Sbjct: 203 VEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEG 262

Query: 125 DLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 181
           DLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 263 DLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 319

[Close]

BLAST of Csor.00g126360 vs. NCBI nr
Match: XP_022939154.1 (30S ribosomal protein S13, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 341 bits (874), Expect = 1.11e-115
Identity = 174/177 (98.31%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 5   KKKKKIREEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGG 64
           KKK   REEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGG
Sbjct: 143 KKKASRREEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGG 202

Query: 65  VEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEG 124
           VEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEG
Sbjct: 203 VEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEG 262

Query: 125 DLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 181
           DLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 263 DLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 319

[Close]

BLAST of Csor.00g126360 vs. NCBI nr
Match: KAG7016519.1 (30S ribosomal protein S13, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 339 bits (870), Expect = 3.19e-114
Identity = 172/175 (98.29%), Postives = 173/175 (98.86%), Query Frame = 0


Query: 7   KKKIREEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVE 66
           KKK  +EIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVE
Sbjct: 204 KKKASQEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVE 263

Query: 67  IPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDL 126
           IPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDL
Sbjct: 264 IPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDL 323

Query: 127 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 181
           RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 324 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 378

[Close]

BLAST of Csor.00g126360 vs. NCBI nr
Match: XP_022993180.1 (30S ribosomal protein S13, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 331 bits (849), Expect = 3.66e-114
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 15  MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 74
           MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL
Sbjct: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 60

Query: 75  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 134
           YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 135 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 181
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Csor.00g126360 vs. ExPASy TrEMBL
Match: A0A6J1FGA3 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445150 PE=3 SV=1)

HSP 1 Score: 341 bits (874), Expect = 5.36e-116
Identity = 174/177 (98.31%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 5   KKKKKIREEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGG 64
           KKK   REEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGG
Sbjct: 143 KKKASRREEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGG 202

Query: 65  VEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEG 124
           VEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEG
Sbjct: 203 VEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEG 262

Query: 125 DLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 181
           DLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 263 DLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 319

[Close]

BLAST of Csor.00g126360 vs. ExPASy TrEMBL
Match: A0A6J1JXU5 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111489278 PE=3 SV=1)

HSP 1 Score: 331 bits (849), Expect = 1.77e-114
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 15  MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 74
           MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL
Sbjct: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 60

Query: 75  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 134
           YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 135 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 181
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Csor.00g126360 vs. ExPASy TrEMBL
Match: A0A5A7TVL6 (30S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00390 PE=3 SV=1)

HSP 1 Score: 313 bits (803), Expect = 7.09e-107
Identity = 156/170 (91.76%), Postives = 164/170 (96.47%), Query Frame = 0


Query: 12  EEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNK 71
           E+IMA TLA+P+APSLSLICNSR SNPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNK
Sbjct: 37  EDIMAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNK 96

Query: 72  RVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNA 131
           RV YSLQYIHGIGRNNAKKILFDLN+ENKITKDL+EEEL S+RDEVSKYMIEGDLRRFNA
Sbjct: 97  RVQYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNA 156

Query: 132 LAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 181
           LAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 157 LAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 206

[Close]

BLAST of Csor.00g126360 vs. ExPASy TrEMBL
Match: A0A1S3CPR4 (30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408 PE=3 SV=1)

HSP 1 Score: 309 bits (792), Expect = 8.69e-106
Identity = 154/167 (92.22%), Postives = 161/167 (96.41%), Query Frame = 0


Query: 15  MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 74
           MA TLA+P+APSLSLICNSR SNPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 75  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 134
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDL+EEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 135 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 181
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Csor.00g126360 vs. ExPASy TrEMBL
Match: A0A0A0KN28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1)

HSP 1 Score: 301 bits (770), Expect = 1.96e-102
Identity = 151/167 (90.42%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 15  MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 74
           MA T A+P+A SLSLI NSR  NPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 75  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 134
           YSLQY+HGIGRNNAKKILFDLNVENKITKDL+EEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 135 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 181
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]

BLAST of Csor.00g126360 vs. TAIR 10
Match: AT5G14320.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 249.2 bits (635), Expect = 2.5e-66
Identity = 128/169 (75.74%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 15  MAHTLALPVAPSLSLICNSRTSNPLS-NAISFPISN-PRVPGLQIKCVRVGGVEIPNNKR 74
           MA  +A+PVA SLSLICN   SNPLS N ++ P SN P    L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 75  VLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNAL 134
           + YSLQYIHGIGR  A++IL DL +ENKITKD+AEEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 135 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 182
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]

BLAST of Csor.00g126360 vs. TAIR 10
Match: AT5G14320.2 (Ribosomal protein S13/S18 family )

HSP 1 Score: 148.3 bits (373), Expect = 6.0e-36
Identity = 79/114 (69.30%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 15  MAHTLALPVAPSLSLICNSRTSNPLS-NAISFPISN-PRVPGLQIKCVRVGGVEIPNNKR 74
           MA  +A+PVA SLSLICN   SNPLS N ++ P SN P    L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 75  VLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDL 127
           + YSLQYIHGIGR  A++IL DL +ENKITKD+AEEELI +RDEVSKYMIEGDL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDL 114

[Close]

BLAST of Csor.00g126360 vs. TAIR 10
Match: AT1G77750.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 135.6 bits (340), Expect = 4.0e-32
Identity = 70/148 (47.30%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 34  RTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILF 93
           R++  L +     + N    GL+++ +RVG  E+PNNK +   LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 94  DLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP 153
            L + NK+ +DL  +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 154 CRGQRTKNNCRTLKGKKVAIAGKKKAPR 182
           CRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

The following BLAST results are available for this feature:

BLAST of Csor.00g126360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42732	3.5e-65	75.74	30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P82163	1.5e-63	73.96	30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 P...	[more]
Q9CA19	5.7e-31	47.30	Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
B1VAC3	9.1e-29	52.94	30S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1	[more]
Q6YQZ7	1.5e-28	52.94	30S ribosomal protein S13 OS=Onion yellows phytoplasma (strain OY-M) OX=262768 G...	[more]

BLAST of Csor.00g126360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578995.1	1.22e-122	100.00	30S ribosomal protein S13, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_023550656.1	1.11e-115	98.31	30S ribosomal protein S13, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022939154.1	1.11e-115	98.31	30S ribosomal protein S13, chloroplastic-like [Cucurbita moschata]	[more]
KAG7016519.1	3.19e-114	98.29	30S ribosomal protein S13, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022993180.1	3.66e-114	100.00	30S ribosomal protein S13, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Csor.00g126360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGA3	5.36e-116	98.31	30S ribosomal protein S13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JXU5	1.77e-114	100.00	30S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A5A7TVL6	7.09e-107	91.76	30S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CPR4	8.69e-106	92.22	30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408...	[more]
A0A0A0KN28	1.96e-102	90.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1	[more]

BLAST of Csor.00g126360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14320.1	2.5e-66	75.74	Ribosomal protein S13/S18 family	[more]
AT5G14320.2	6.0e-36	69.30	Ribosomal protein S13/S18 family	[more]
AT1G77750.1	4.0e-32	47.30	Ribosomal protein S13/S18 family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 61..165 e-value: 3.9E-31 score: 108.1
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 62..168 score: 34.482307
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 59..175 score: 24.017414
IPR019980	Ribosomal protein S13, bacterial-type	TIGRFAM	TIGR03631	TIGR03631	coord: 61..170 e-value: 1.0E-39 score: 133.5
IPR019980	Ribosomal protein S13, bacterial-type	PANTHER	PTHR10871:SF1	37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL	coord: 9..179
None	No IPR available	GENE3D	1.10.8.50		coord: 60..128 e-value: 4.1E-24 score: 86.5
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 9..179
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10	30s ribosomal protein s13, domain 2	coord: 129..181 e-value: 7.6E-26 score: 91.5
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 144..157
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	46946	S13-like H2TH domain	coord: 60..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g126360.m01	Csor.00g126360.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding