Csor.00g126050 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g126050
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	zinc_ribbon_15 domain-containing protein
Location	Csor_Chr15: 3350916 .. 3351254 (+)
RNA-Seq Expression	Csor.00g126050
Synteny	Csor.00g126050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTCTTCTTCGTCGGGGGTTTGGAGCAACAAGTTCGCCAGCTCCTCAAATCCGGCGCCGGCCGGTGCGTAAACTGTAACTCGCCGGCCGATCTCGTTAACTACGAGAAAGTTCTGAAGCTCTTCTTTGTTCCGGTGTGGCGGTGGCCGGGAAAAGAGCCACTGATGCACTGCAACAACTGTAATCTCTTTTTTCCTCAGTCGTTCTCTCCGCCGCCAATTTCCGATCAATCGACGCCACCAGCCACTCTTTCAAGGACCCTTCGTTGCCGTTCATGTAACAAAGTAGTGGAGCCCAACTTCAGTTTCTGCCCTTTCTGTGGTTCTTCCTTGTAA

mRNA sequence

ATGTTCTTCTTCTTCGTCGGGGGTTTGGAGCAACAAGTTCGCCAGCTCCTCAAATCCGGCGCCGGCCGGTGCGTAAACTGTAACTCGCCGGCCGATCTCGTTAACTACGAGAAAGTTCTGAAGCTCTTCTTTGTTCCGGTGTGGCGGTGGCCGGGAAAAGAGCCACTGATGCACTGCAACAACTGTAATCTCTTTTTTCCTCAGTCGTTCTCTCCGCCGCCAATTTCCGATCAATCGACGCCACCAGCCACTCTTTCAAGGACCCTTCGTTGCCGTTCATGTAACAAAGTAGTGGAGCCCAACTTCAGTTTCTGCCCTTTCTGTGGTTCTTCCTTGTAA

Coding sequence (CDS)

ATGTTCTTCTTCTTCGTCGGGGGTTTGGAGCAACAAGTTCGCCAGCTCCTCAAATCCGGCGCCGGCCGGTGCGTAAACTGTAACTCGCCGGCCGATCTCGTTAACTACGAGAAAGTTCTGAAGCTCTTCTTTGTTCCGGTGTGGCGGTGGCCGGGAAAAGAGCCACTGATGCACTGCAACAACTGTAATCTCTTTTTTCCTCAGTCGTTCTCTCCGCCGCCAATTTCCGATCAATCGACGCCACCAGCCACTCTTTCAAGGACCCTTCGTTGCCGTTCATGTAACAAAGTAGTGGAGCCCAACTTCAGTTTCTGCCCTTTCTGTGGTTCTTCCTTGTAA

Protein sequence

MFFFFVGGLEQQVRQLLKSGAGRCVNCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCNNCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL

Homology

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BLAST of Csor.00g126050 vs. NCBI nr
Match: KAG6578964.1 (hypothetical protein SDJN03_23412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244 bits (622), Expect = 1.40e-81
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCVNCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKSGAGRCVNCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAGRCVNCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112
           NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL
Sbjct: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112

[Close]

BLAST of Csor.00g126050 vs. NCBI nr
Match: KAG7016486.1 (hypothetical protein SDJN02_21595, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243 bits (621), Expect = 1.99e-81
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCVNCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKSGAGRC+NCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112
           NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL
Sbjct: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112

[Close]

BLAST of Csor.00g126050 vs. NCBI nr
Match: XP_022939102.1 (uncharacterized protein LOC111445104 [Cucurbita moschata])

HSP 1 Score: 234 bits (597), Expect = 9.15e-78
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCVNCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKS AGRC+NCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112
           NCNLFFP SFSPPPISDQSTPPA  SRTLRCRSCNKVVEPNFSFCPFCGSSL
Sbjct: 61  NCNLFFPPSFSPPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSSL 112

[Close]

BLAST of Csor.00g126050 vs. NCBI nr
Match: XP_022992997.1 (uncharacterized protein LOC111489157 [Cucurbita maxima])

HSP 1 Score: 233 bits (595), Expect = 1.85e-77
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCVNCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKS AGRC+NCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSAAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112
           NCNLFFP+SFSPPPISDQSTPPA LSRTLRCRSCNKVVEP+FSFCPFCG SL
Sbjct: 61  NCNLFFPRSFSPPPISDQSTPPAALSRTLRCRSCNKVVEPDFSFCPFCGFSL 112

[Close]

BLAST of Csor.00g126050 vs. NCBI nr
Match: XP_038884584.1 (uncharacterized protein LOC120075351 [Benincasa hispida])

HSP 1 Score: 216 bits (551), Expect = 9.54e-71
Identity = 96/112 (85.71%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCVNCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGL+QQVRQ++KS AGRC+NCNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLQQQVRQIIKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112
           NC LFFPQSFSPPPISDQS P A L R L CRSCN+VVEP+FSFCP+CGSSL
Sbjct: 61  NCKLFFPQSFSPPPISDQSLPSAALLRALHCRSCNRVVEPDFSFCPYCGSSL 112

[Close]

BLAST of Csor.00g126050 vs. ExPASy TrEMBL
Match: A0A6J1FFV9 (uncharacterized protein LOC111445104 OS=Cucurbita moschata OX=3662 GN=LOC111445104 PE=4 SV=1)

HSP 1 Score: 234 bits (597), Expect = 4.43e-78
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCVNCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKS AGRC+NCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112
           NCNLFFP SFSPPPISDQSTPPA  SRTLRCRSCNKVVEPNFSFCPFCGSSL
Sbjct: 61  NCNLFFPPSFSPPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSSL 112

[Close]

BLAST of Csor.00g126050 vs. ExPASy TrEMBL
Match: A0A6J1JRI4 (uncharacterized protein LOC111489157 OS=Cucurbita maxima OX=3661 GN=LOC111489157 PE=4 SV=1)

HSP 1 Score: 233 bits (595), Expect = 8.94e-78
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCVNCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKS AGRC+NCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSAAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112
           NCNLFFP+SFSPPPISDQSTPPA LSRTLRCRSCNKVVEP+FSFCPFCG SL
Sbjct: 61  NCNLFFPRSFSPPPISDQSTPPAALSRTLRCRSCNKVVEPDFSFCPFCGFSL 112

[Close]

BLAST of Csor.00g126050 vs. ExPASy TrEMBL
Match: A0A6J1HEV4 (uncharacterized protein LOC111462885 OS=Cucurbita moschata OX=3662 GN=LOC111462885 PE=4 SV=1)

HSP 1 Score: 215 bits (547), Expect = 1.88e-70
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCVNCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+GAGRC++CNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112
           NC LFFP+SFSPPPISDQ  P A L R LRC SCNKVVEP+FSFCPFCGSSL
Sbjct: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 112

[Close]

BLAST of Csor.00g126050 vs. ExPASy TrEMBL
Match: A0A5A7V2D0 (zinc_ribbon_15 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001160 PE=4 SV=1)

HSP 1 Score: 213 bits (543), Expect = 7.43e-70
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCVNCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKSGA RC+NC+SPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112
           NC LFFPQS SPP  SDQS P A LSR LRCRSCNKVVEP+FSFCP+CGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQS-PSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Csor.00g126050 vs. ExPASy TrEMBL
Match: A0A1S3CRV3 (uncharacterized protein LOC103504060 OS=Cucumis melo OX=3656 GN=LOC103504060 PE=4 SV=1)

HSP 1 Score: 213 bits (543), Expect = 7.43e-70
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCVNCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKSGA RC+NC+SPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112
           NC LFFPQS SPP  SDQS P A LSR LRCRSCNKVVEP+FSFCP+CGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQS-PSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Csor.00g126050 vs. TAIR 10
Match: AT1G44414.1 (unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-43
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCVNCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGL QQVRQ+LKSGAG C+ C S ADLV Y+KV+KLFFVPVWRWPGK+PL+HC 
Sbjct: 1   MFFFFVGGLGQQVRQVLKSGAGTCIRCGSQADLVEYDKVIKLFFVPVWRWPGKDPLLHCR 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           +C+LFFPQS SPPP+S              CR C++VVEP F FCPFCGSSL
Sbjct: 61  DCDLFFPQSLSPPPVS-----------LATCRFCDRVVEPEFRFCPFCGSSL 101

The following BLAST results are available for this feature:

BLAST of Csor.00g126050 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g126050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578964.1	1.40e-81	100.00	hypothetical protein SDJN03_23412, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016486.1	1.99e-81	99.11	hypothetical protein SDJN02_21595, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022939102.1	9.15e-78	95.54	uncharacterized protein LOC111445104 [Cucurbita moschata]	[more]
XP_022992997.1	1.85e-77	94.64	uncharacterized protein LOC111489157 [Cucurbita maxima]	[more]
XP_038884584.1	9.54e-71	85.71	uncharacterized protein LOC120075351 [Benincasa hispida]	[more]

BLAST of Csor.00g126050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FFV9	4.43e-78	95.54	uncharacterized protein LOC111445104 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A6J1JRI4	8.94e-78	94.64	uncharacterized protein LOC111489157 OS=Cucurbita maxima OX=3661 GN=LOC111489157...	[more]
A0A6J1HEV4	1.88e-70	86.61	uncharacterized protein LOC111462885 OS=Cucurbita moschata OX=3662 GN=LOC1114628...	[more]
A0A5A7V2D0	7.43e-70	88.39	zinc_ribbon_15 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CRV3	7.43e-70	88.39	uncharacterized protein LOC103504060 OS=Cucumis melo OX=3656 GN=LOC103504060 PE=...	[more]

BLAST of Csor.00g126050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G44414.1	1.1e-43	67.86	unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031493	Zinc-ribbon 15	PFAM	PF17032	zinc_ribbon_15	coord: 23..109 e-value: 6.7E-23 score: 81.2
None	No IPR available	PANTHER	PTHR36718	OS05G0435400 PROTEIN	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g126050.m01	Csor.00g126050.m01	mRNA