Csor.00g125870 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g125870
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	chloroplast processing peptidase-like
Location	Csor_Chr15: 3247240 .. 3247974 (-)
RNA-Seq Expression	Csor.00g125870
Synteny	Csor.00g125870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTTGGAGATTCAGTGCATTCCGTCGTCATCAATGTATCCAACTCTTCGTATCGGAGATCGAATGCTTGTCGAGAAGGTAAATGTCTCGAGAGTTCCTTTGGTTTTAAGTTGAGTTTTGGATATATCAATGAAATTATGAATCGACTTTGGTTTCTTCTGTTTTTCTGAGATGAATTTTGAAATTTAGGGTTCGAGAAGGTTTTAGGTGTATTTTTGTGCTTGTGGATTGAGATTTTAGCGTTGTTATGATGAAGCTTGATCGATTGAAGCTTCAAAATTATGTTTCGGTTATTTCTTATTCGAAGAAAGTAGATGAATCATGTGTATGAAGGTTGTACTGCGAAACATAATCGTTGATAATTTCTTGTTAGTAGCCATTTTCATATCGAAGGAGAAAGAATCGAACGTCTTGGAAACAATATGCACATGAACATCCAACGAATTTTGATCTCAGCAGTTAAGATGCAGGGATTATGACACTAATTCTTATGTCCTGGTTTCATTTTCTTCAGGCCTCTTATTACATCAGAAATCCTTCTATAGATGACATTATAACCTTCGGAGACCCGACACAGGTAAGTCGACGAACGACTCACATGCATGTCTTTTAGTTCAACAGTTTTTCTCTAACATGATGCTGTTGAAATTATAGTGTGCTATAGCAATCTGGATGCAGAGAAGAAAACGTCGCTGTAAAGAGAGTTGTTGCACGAGCCAGAGATACGGTTGA

mRNA sequence

ATGCTTTTGGAGATTCAGTGCATTCCGTCGTCATCAATGTATCCAACTCTTCGTATCGGAGATCGAATGCTTGTCGAGAAGGCCTCTTATTACATCAGAAATCCTTCTATAGATGACATTATAACCTTCGGAGACCCGACACAGTGTGCTATAGCAATCTGGATGCAGAGAAGAAAACGTCGCTGTAAAGAGAGTTGTTGCACGAGCCAGAGATACGGTTGA

Coding sequence (CDS)

ATGCTTTTGGAGATTCAGTGCATTCCGTCGTCATCAATGTATCCAACTCTTCGTATCGGAGATCGAATGCTTGTCGAGAAGGCCTCTTATTACATCAGAAATCCTTCTATAGATGACATTATAACCTTCGGAGACCCGACACAGTGTGCTATAGCAATCTGGATGCAGAGAAGAAAACGTCGCTGTAAAGAGAGTTGTTGCACGAGCCAGAGATACGGTTGA

Protein sequence

MLLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDPTQCAIAIWMQRRKRRCKESCCTSQRYG

Homology

[Close]

BLAST of Csor.00g125870 vs. ExPASy Swiss-Prot
Match: O04348 (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TPP1 PE=2 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 3.0e-07
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 2   LLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDP 47
           L E + IPS+SMYPTL  GDR++ EK SY+ R P + DI+ F  P
Sbjct: 174 LAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAP 218

[Close]

BLAST of Csor.00g125870 vs. ExPASy Swiss-Prot
Match: Q8H0W1 (Chloroplast processing peptidase OS=Arabidopsis thaliana OX=3702 GN=PLSP1 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-07
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 2   LLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDP 47
           + E + IPS SMYPT  +GDR++ EK SYY R P  +DI+ F  P
Sbjct: 132 IAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCANDIVIFKSP 176

[Close]

BLAST of Csor.00g125870 vs. ExPASy Swiss-Prot
Match: Q9M9Z2 (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TPP2 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-07
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 2   LLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDP 47
           L E + IPS+SM PTL +GDR++ EK SY+ R P + DI+ F  P
Sbjct: 204 LAEPKSIPSTSMLPTLDVGDRVIAEKVSYFFRKPEVSDIVIFKAP 248

[Close]

BLAST of Csor.00g125870 vs. ExPASy Swiss-Prot
Match: P72660 (Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=lepB1 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.4e-06
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 4  EIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDP 47
          E + IPS SM PTL  GDR++VEK SY+   P + DII F  P
Sbjct: 36 EPRYIPSDSMLPTLEQGDRLVVEKVSYHFHPPQVGDIIVFHPP 78

[Close]

BLAST of Csor.00g125870 vs. ExPASy Swiss-Prot
Match: P73157 (Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=lepB2 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.3e-05
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 4  EIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDPT 48
          E + IPSSSM PTL+I DR+++EK SY +R+P   +I+ F +PT
Sbjct: 44 EARYIPSSSMEPTLQINDRLIIEKISYRLRDPERGEIVVF-NPT 86

[Close]

BLAST of Csor.00g125870 vs. NCBI nr
Match: KAG6578946.1 (Thylakoidal processing peptidase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154 bits (389), Expect = 2.97e-47
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MLLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDPTQCAIAIWMQRRKR 60
          MLLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDPTQCAIAIWMQRRKR
Sbjct: 1  MLLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDPTQCAIAIWMQRRKR 60

Query: 61 RCKESCCTSQRYG 73
          RCKESCCTSQRYG
Sbjct: 61 RCKESCCTSQRYG 73

[Close]

BLAST of Csor.00g125870 vs. NCBI nr
Match: KAG7016470.1 (Chloroplast processing peptidase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.0 bits (227), Expect = 3.52e-21
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   MLLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDPTQ 48
           MLLEIQCIPSSSM P LRIGDRMLVEKASYYIRNPSIDDIITF DPTQ
Sbjct: 65  MLLEIQCIPSSSMCPALRIGDRMLVEKASYYIRNPSIDDIITFRDPTQ 112

[Close]

BLAST of Csor.00g125870 vs. NCBI nr
Match: XP_038885468.1 (chloroplast processing peptidase-like [Benincasa hispida])

HSP 1 Score: 89.7 bits (221), Expect = 2.50e-20
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MLLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDPTQ 48
          MLLEI  IPSSSMYPTLR+GDR+LVEKASYYIRNPSIDDIITF DPTQ
Sbjct: 44 MLLEIHSIPSSSMYPTLRVGDRILVEKASYYIRNPSIDDIITFRDPTQ 91

[Close]

BLAST of Csor.00g125870 vs. NCBI nr
Match: XP_022141360.1 (chloroplast processing peptidase-like isoform X2 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 5.39e-20
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MLLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDPTQ 48
          MLLEI  IPSSSMYPTLR+GDR+LVEKASYYIRNP+IDDIITF DPTQ
Sbjct: 46 MLLEIHYIPSSSMYPTLRVGDRILVEKASYYIRNPAIDDIITFRDPTQ 93

[Close]

BLAST of Csor.00g125870 vs. NCBI nr
Match: XP_022141359.1 (chloroplast processing peptidase-like isoform X1 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 1.07e-19
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MLLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDPTQ 48
          MLLEI  IPSSSMYPTLR+GDR+LVEKASYYIRNP+IDDIITF DPTQ
Sbjct: 46 MLLEIHYIPSSSMYPTLRVGDRILVEKASYYIRNPAIDDIITFRDPTQ 93

[Close]

BLAST of Csor.00g125870 vs. ExPASy TrEMBL
Match: A0A6J1CHV1 (chloroplast processing peptidase-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011778 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.61e-20
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MLLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDPTQ 48
          MLLEI  IPSSSMYPTLR+GDR+LVEKASYYIRNP+IDDIITF DPTQ
Sbjct: 46 MLLEIHYIPSSSMYPTLRVGDRILVEKASYYIRNPAIDDIITFRDPTQ 93

[Close]

BLAST of Csor.00g125870 vs. ExPASy TrEMBL
Match: A0A6J1CIF2 (chloroplast processing peptidase-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011778 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.16e-20
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MLLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDPTQ 48
          MLLEI  IPSSSMYPTLR+GDR+LVEKASYYIRNP+IDDIITF DPTQ
Sbjct: 46 MLLEIHYIPSSSMYPTLRVGDRILVEKASYYIRNPAIDDIITFRDPTQ 93

[Close]

BLAST of Csor.00g125870 vs. ExPASy TrEMBL
Match: A0A6J1JS29 (chloroplast processing peptidase-like OS=Cucurbita maxima OX=3661 GN=LOC111487833 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.77e-19
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MLLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDPTQ 48
          M LEI  IPSSSMYPTLRIGDR+LVEK SYYIRNPSIDDIITF DPTQ
Sbjct: 44 MYLEIHFIPSSSMYPTLRIGDRILVEKVSYYIRNPSIDDIITFRDPTQ 91

[Close]

BLAST of Csor.00g125870 vs. ExPASy TrEMBL
Match: A0A6J1GPV1 (chloroplast processing peptidase-like OS=Cucurbita moschata OX=3662 GN=LOC111456402 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.77e-19
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MLLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDPTQ 48
          M LEI  IPSSSMYPTLRIGDR+LVEK SYYIRNPSIDDIITF DPTQ
Sbjct: 44 MYLEIHFIPSSSMYPTLRIGDRILVEKVSYYIRNPSIDDIITFRDPTQ 91

[Close]

BLAST of Csor.00g125870 vs. ExPASy TrEMBL
Match: A0A1S3CRY6 (chloroplast processing peptidase-like OS=Cucumis melo OX=3656 GN=LOC103504090 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.77e-19
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MLLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDPTQ 48
          MLLEI  IPSSSMYPTLR+GDR+LVEKASY+IRNPSI+DIITF DPTQ
Sbjct: 44 MLLEIHSIPSSSMYPTLRVGDRILVEKASYFIRNPSINDIITFQDPTQ 91

[Close]

BLAST of Csor.00g125870 vs. TAIR 10
Match: AT2G30440.1 (thylakoid processing peptide )

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-08
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 2   LLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDP 47
           L E + IPS+SMYPTL  GDR++ EK SY+ R P + DI+ F  P
Sbjct: 174 LAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAP 218

[Close]

BLAST of Csor.00g125870 vs. TAIR 10
Match: AT1G06870.1 (Peptidase S24/S26A/S26B/S26C family protein )

HSP 1 Score: 54.7 bits (130), Expect = 3.7e-08
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 2   LLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDP 47
           L E + IPS+SM PTL +GDR++ EK SY+ R P + DI+ F  P
Sbjct: 204 LAEPKSIPSTSMLPTLDVGDRVIAEKVSYFFRKPEVSDIVIFKAP 248

[Close]

BLAST of Csor.00g125870 vs. TAIR 10
Match: AT3G24590.1 (plastidic type i signal peptidase 1 )

HSP 1 Score: 54.7 bits (130), Expect = 3.7e-08
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 2   LLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDP 47
           + E + IPS SMYPT  +GDR++ EK SYY R P  +DI+ F  P
Sbjct: 132 IAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCANDIVIFKSP 176

The following BLAST results are available for this feature:

BLAST of Csor.00g125870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04348	3.0e-07	53.33	Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
Q8H0W1	5.1e-07	51.11	Chloroplast processing peptidase OS=Arabidopsis thaliana OX=3702 GN=PLSP1 PE=2 S...	[more]
Q9M9Z2	5.1e-07	51.11	Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thalia...	[more]
P72660	7.4e-06	53.49	Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX...	[more]
P73157	1.3e-05	52.27	Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX...	[more]

BLAST of Csor.00g125870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578946.1	2.97e-47	100.00	Thylakoidal processing peptidase 1, chloroplastic, partial [Cucurbita argyrosper...	[more]
KAG7016470.1	3.52e-21	93.75	Chloroplast processing peptidase, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_038885468.1	2.50e-20	89.58	chloroplast processing peptidase-like [Benincasa hispida]	[more]
XP_022141360.1	5.39e-20	87.50	chloroplast processing peptidase-like isoform X2 [Momordica charantia]	[more]
XP_022141359.1	1.07e-19	87.50	chloroplast processing peptidase-like isoform X1 [Momordica charantia]	[more]

BLAST of Csor.00g125870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHV1	2.61e-20	87.50	chloroplast processing peptidase-like isoform X2 OS=Momordica charantia OX=3673 ...	[more]
A0A6J1CIF2	5.16e-20	87.50	chloroplast processing peptidase-like isoform X1 OS=Momordica charantia OX=3673 ...	[more]
A0A6J1JS29	2.77e-19	87.50	chloroplast processing peptidase-like OS=Cucurbita maxima OX=3661 GN=LOC11148783...	[more]
A0A6J1GPV1	2.77e-19	87.50	chloroplast processing peptidase-like OS=Cucurbita moschata OX=3662 GN=LOC111456...	[more]
A0A1S3CRY6	2.77e-19	85.42	chloroplast processing peptidase-like OS=Cucumis melo OX=3656 GN=LOC103504090 PE...	[more]

BLAST of Csor.00g125870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30440.1	2.1e-08	53.33	thylakoid processing peptide	[more]
AT1G06870.1	3.7e-08	51.11	Peptidase S24/S26A/S26B/S26C family protein	[more]
AT3G24590.1	3.7e-08	51.11	plastidic type i signal peptidase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019533	Peptidase S26	PFAM	PF10502	Peptidase_S26	coord: 4..48 e-value: 8.8E-9 score: 35.5
IPR019533	Peptidase S26	CDD	cd06530	S26_SPase_I	coord: 8..56 e-value: 8.95121E-14 score: 57.9807
None	No IPR available	GENE3D	2.10.109.10	Umud Fragment, subunit A	coord: 1..68 e-value: 7.9E-9 score: 37.4
None	No IPR available	PANTHER	PTHR43390:SF10	CHLOROPLAST PROCESSING PEPTIDASE-LIKE	coord: 1..49
IPR000223	Peptidase S26A, signal peptidase I	PANTHER	PTHR43390	SIGNAL PEPTIDASE I	coord: 1..49
IPR019756	Peptidase S26A, signal peptidase I, serine active site	PROSITE	PS00501	SPASE_I_1	coord: 10..17
IPR036286	LexA/Signal peptidase-like superfamily	SUPERFAMILY	51306	LexA/Signal peptidase	coord: 2..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g125870.m01	Csor.00g125870.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006465	signal peptide processing
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005887	integral component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0008236	serine-type peptidase activity