Csor.00g125390 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g125390
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr15: 2989415 .. 2989726 (-)
RNA-Seq ExpressionCsor.00g125390
SyntenyCsor.00g125390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTATTCCACGGCTAACCTATTCATTGTTATTTTGGTAGCATCCATTGCTCTAAGGCCACCGTCGGCAACCACCGCAAGCGCCGTCGTTGGCCCTTCTCCTCTGCCGCCGCCGATATACCATTCAGCTTCTGGGACACTATCATTTGGCCGTTATATCAAAATTAGCCTTGAAGGGAAGGCAGGCCCTGTAGTGGAAAATGGAGAGGATGAATCTGAACCACCACCACCATCATCCAAGGTTAGAAGGGGCCCCAGACGACCATGGCCTAAGAAACCTGTCGCCAAATCGCCACCGCCTCCATTTTAG

mRNA sequence

ATGGGGTATTCCACGGCTAACCTATTCATTGTTATTTTGGTAGCATCCATTGCTCTAAGGCCACCGTCGGCAACCACCGCAAGCGCCGTCGTTGGCCCTTCTCCTCTGCCGCCGCCGATATACCATTCAGCTTCTGGGACACTATCATTTGGCCGTTATATCAAAATTAGCCTTGAAGGGAAGGCAGGCCCTGTAGTGGAAAATGGAGAGGATGAATCTGAACCACCACCACCATCATCCAAGGTTAGAAGGGGCCCCAGACGACCATGGCCTAAGAAACCTGTCGCCAAATCGCCACCGCCTCCATTTTAG

Coding sequence (CDS)

ATGGGGTATTCCACGGCTAACCTATTCATTGTTATTTTGGTAGCATCCATTGCTCTAAGGCCACCGTCGGCAACCACCGCAAGCGCCGTCGTTGGCCCTTCTCCTCTGCCGCCGCCGATATACCATTCAGCTTCTGGGACACTATCATTTGGCCGTTATATCAAAATTAGCCTTGAAGGGAAGGCAGGCCCTGTAGTGGAAAATGGAGAGGATGAATCTGAACCACCACCACCATCATCCAAGGTTAGAAGGGGCCCCAGACGACCATGGCCTAAGAAACCTGTCGCCAAATCGCCACCGCCTCCATTTTAG

Protein sequence

MGYSTANLFIVILVASIALRPPSATTASAVVGPSPLPPPIYHSASGTLSFGRYIKISLEGKAGPVVENGEDESEPPPPSSKVRRGPRRPWPKKPVAKSPPPPF
Homology
BLAST of Csor.00g125390 vs. NCBI nr
Match: KAG6578899.1 (hypothetical protein SDJN03_23347, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197 bits (502), Expect = 1.47e-63
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MGYSTANLFIVILVASIALRPPSATTASAVVGPSPLPPPIYHSASGTLSFGRYIKISLEG 60
           MGYSTANLFIVILVASIALRPPSATTASAVVGPSPLPPPIYHSASGTLSFGRYIKISLEG
Sbjct: 1   MGYSTANLFIVILVASIALRPPSATTASAVVGPSPLPPPIYHSASGTLSFGRYIKISLEG 60

Query: 61  KAGPVVENGEDESEPPPPSSKVRRGPRRPWPKKPVAKSPPPPF 103
           KAGPVVENGEDESEPPPPSSKVRRGPRRPWPKKPVAKSPPPPF
Sbjct: 61  KAGPVVENGEDESEPPPPSSKVRRGPRRPWPKKPVAKSPPPPF 103

BLAST of Csor.00g125390 vs. NCBI nr
Match: KAG6578898.1 (hypothetical protein SDJN03_23346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106 bits (264), Expect = 2.24e-27
Identity = 66/103 (64.08%), Postives = 74/103 (71.84%), Query Frame = 0

Query: 1   MGYSTANLFIVILVASIALRPPSATTASAVVGPSPLPPPIYHSASGTLSFGRYIKISLEG 60
           MGYSTANL   ILVASIALR P    ASA+VGPSPLPPP  HS SG L F R IK+SL  
Sbjct: 1   MGYSTANLMFGILVASIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIKVSLTV 60

Query: 61  KAGPVVENGEDESEPPPPSSKVRRGPRRPWPKKPVAKSPPPPF 103
           KA     +GEDE+E P  SSK  +G R+PWPK+PV K+PPPPF
Sbjct: 61  KA-----SGEDEAEAP--SSKDEKGRRKPWPKQPVPKAPPPPF 96

BLAST of Csor.00g125390 vs. NCBI nr
Match: KAA0054914.1 (hypothetical protein E6C27_scaffold43052G00420 [Cucumis melo var. makuwa] >TYK22702.1 hypothetical protein E5676_scaffold1163G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 9.35e-17
Identity = 55/107 (51.40%), Postives = 68/107 (63.55%), Query Frame = 0

Query: 1   MGYSTANLFIV-ILVASIALRPPSATTASAVVGPSPLP---PPIYHSASGTLSFGRYIKI 60
           MG STAN+ I+ I VASIALR PS TTA A+  P PL     PIY++          +K+
Sbjct: 1   MGCSTANILILTIFVASIALRLPSETTARAIADPYPLSWPWLPIYNTL---------MKV 60

Query: 61  SLEGKAGPVVENGEDESEPPPPSSKVRRGPRRPWPKKPVAKSPPPPF 103
            L  +AG   ENG+DES+PP   SK  +  R+PWPK PV+KSPPPPF
Sbjct: 61  RLNDEAGSGEENGDDESDPP---SKEAKSSRKPWPKNPVSKSPPPPF 95

BLAST of Csor.00g125390 vs. NCBI nr
Match: KAE8646678.1 (hypothetical protein Csa_023589, partial [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 7.05e-11
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 0

Query: 16  SIALRPPSATTASAVVGPSPLPPPIYHSASGTLSFGRYIKISLEGKAGPVVENGEDESEP 75
           SIALR P+ TTA A+  P PL      S    L +   +K+ L  +AG    +G+DES+P
Sbjct: 1   SIALRLPTETTARAIADPYPL------SWPRLLIYNTVMKVRLNDEAGSGEGSGDDESDP 60

Query: 76  PPPSSKVRRGPRRPWPKKPVAKSPPPPF 103
           P    K  +G R+PWPK PV+KSPPPPF
Sbjct: 61  P---LKEEKGSRKPWPKNPVSKSPPPPF 79

BLAST of Csor.00g125390 vs. NCBI nr
Match: KAE8637368.1 (hypothetical protein CSA_004461, partial [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 3.84e-09
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = 0

Query: 1  MGYSTANLFIV-ILVASIALRPPSATTASAVVGPSPLPPPIYHSASGTLSFGRYIKISLE 60
          MG STAN+ I+ I VASIALR P+ TTA A+  P PL      S    L +   +K+ L 
Sbjct: 1  MGCSTANIVILTIFVASIALRLPTETTARAIADPYPL------SWPRLLIYNTVMKVRLN 60

Query: 61 GKAGPVVENGEDESEPPPPSSKVRRGPRRPWPKKP 94
           +AG    +G+DES+PP    K  +G R+PWPK P
Sbjct: 61 DEAGSGEGSGDDESDPP---LKEEKGSRKPWPKNP 86

BLAST of Csor.00g125390 vs. ExPASy TrEMBL
Match: A0A5A7UIB8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00190 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.53e-17
Identity = 55/107 (51.40%), Postives = 68/107 (63.55%), Query Frame = 0

Query: 1   MGYSTANLFIV-ILVASIALRPPSATTASAVVGPSPLP---PPIYHSASGTLSFGRYIKI 60
           MG STAN+ I+ I VASIALR PS TTA A+  P PL     PIY++          +K+
Sbjct: 1   MGCSTANILILTIFVASIALRLPSETTARAIADPYPLSWPWLPIYNTL---------MKV 60

Query: 61  SLEGKAGPVVENGEDESEPPPPSSKVRRGPRRPWPKKPVAKSPPPPF 103
            L  +AG   ENG+DES+PP   SK  +  R+PWPK PV+KSPPPPF
Sbjct: 61  RLNDEAGSGEENGDDESDPP---SKEAKSSRKPWPKNPVSKSPPPPF 95

BLAST of Csor.00g125390 vs. ExPASy TrEMBL
Match: A0A0A0K9K2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058720 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.48e-15
Identity = 51/104 (49.04%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 1   MGYSTANLFIV-ILVASIALRPPSATTASAVVGPSPLPPPIYHSASGTLSFGRYIKISLE 60
           MG STAN+ I+ I VASIALR P+ TTA A+  P PL      S    L +   +K+ L 
Sbjct: 1   MGCSTANIVILTIFVASIALRLPTETTARAIADPYPL------SWPRLLIYNTVMKVRLN 60

Query: 61  GKAGPVVENGEDESEPPPPSSKVRRGPRRPWPKKPVAKSPPPPF 103
            +AG    +G+DES+PP    K  +G R+PWPK PV+KSPPPPF
Sbjct: 61  DEAGSGEGSGDDESDPP---LKEEKGSRKPWPKNPVSKSPPPPF 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6578899.11.47e-63100.00hypothetical protein SDJN03_23347, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6578898.12.24e-2764.08hypothetical protein SDJN03_23346, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0054914.19.35e-1751.40hypothetical protein E6C27_scaffold43052G00420 [Cucumis melo var. makuwa] >TYK22... [more]
KAE8646678.17.05e-1146.59hypothetical protein Csa_023589, partial [Cucumis sativus][more]
KAE8637368.13.84e-0945.26hypothetical protein CSA_004461, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5A7UIB84.53e-1751.40Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K9K21.48e-1549.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058720 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g125390.m01Csor.00g125390.m01mRNA