Csor.00g125370 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g125370
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr15: 2986525 .. 2986839 (+)
RNA-Seq Expression	Csor.00g125370
Synteny	Csor.00g125370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTAAGGCGCACTTTGGCCACGGTTCATCACTTCTCTCTGGATGTTTTCCTTTATTCCCAGATGCTTTCGGACACTTATCTTCCCGGTCAGCTTTTAGTCGCCGGAATGGTCTCAGGGGAGACTCCTTCGACGGCAGCCACGGTGGGGGAGAGCTCTCCTGACTCAATACCATTTCACGTTGGAGCGCCGGTGGAGGAGAAGACTGACCGGAGCTTGGACAAATGGACGCCGCTAAAATCCCAAAAACTAGGCACGCCGCCCAAGCCACCGCCGCCGCCGCCATCCGGATTTTTGTTCACTGTTTTCTGA

mRNA sequence

ATGCAGGTAAGGCGCACTTTGGCCACGGTTCATCACTTCTCTCTGGATGTTTTCCTTTATTCCCAGATGCTTTCGGACACTTATCTTCCCGGTCAGCTTTTAGTCGCCGGAATGGTCTCAGGGGAGACTCCTTCGACGGCAGCCACGGTGGGGGAGAGCTCTCCTGACTCAATACCATTTCACGTTGGAGCGCCGGTGGAGGAGAAGACTGACCGGAGCTTGGACAAATGGACGCCGCTAAAATCCCAAAAACTAGGCACGCCGCCCAAGCCACCGCCGCCGCCGCCATCCGGATTTTTGTTCACTGTTTTCTGA

Coding sequence (CDS)

ATGCAGGTAAGGCGCACTTTGGCCACGGTTCATCACTTCTCTCTGGATGTTTTCCTTTATTCCCAGATGCTTTCGGACACTTATCTTCCCGGTCAGCTTTTAGTCGCCGGAATGGTCTCAGGGGAGACTCCTTCGACGGCAGCCACGGTGGGGGAGAGCTCTCCTGACTCAATACCATTTCACGTTGGAGCGCCGGTGGAGGAGAAGACTGACCGGAGCTTGGACAAATGGACGCCGCTAAAATCCCAAAAACTAGGCACGCCGCCCAAGCCACCGCCGCCGCCGCCATCCGGATTTTTGTTCACTGTTTTCTGA

Protein sequence

MQVRRTLATVHHFSLDVFLYSQMLSDTYLPGQLLVAGMVSGETPSTAATVGESSPDSIPFHVGAPVEEKTDRSLDKWTPLKSQKLGTPPKPPPPPPSGFLFTVF

Homology

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BLAST of Csor.00g125370 vs. NCBI nr
Match: KAG6578897.1 (hypothetical protein SDJN03_23345, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209 bits (533), Expect = 2.95e-68
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MQVRRTLATVHHFSLDVFLYSQMLSDTYLPGQLLVAGMVSGETPSTAATVGESSPDSIPF 60
           MQVRRTLATVHHFSLDVFLYSQMLSDTYLPGQLLVAGMVSGETPSTAATVGESSPDSIPF
Sbjct: 1   MQVRRTLATVHHFSLDVFLYSQMLSDTYLPGQLLVAGMVSGETPSTAATVGESSPDSIPF 60

Query: 61  HVGAPVEEKTDRSLDKWTPLKSQKLGTPPKPPPPPPSGFLFTVF 104
           HVGAPVEEKTDRSLDKWTPLKSQKLGTPPKPPPPPPSGFLFTVF
Sbjct: 61  HVGAPVEEKTDRSLDKWTPLKSQKLGTPPKPPPPPPSGFLFTVF 104

The following BLAST results are available for this feature:

BLAST of Csor.00g125370 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g125370 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578897.1	2.95e-68	100.00	hypothetical protein SDJN03_23345, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g125370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g125370 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g125370.m01	Csor.00g125370.m01	mRNA