Csor.00g123620 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g123620
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	ylmG homolog protein 1-2, chloroplastic
Location	Csor_Chr14: 11529244 .. 11530135 (-)
RNA-Seq Expression	Csor.00g123620
Synteny	Csor.00g123620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTTCCCTAATCGCTTCTCAAGCTCTGCCCCTCCGACGCCCCGTCCTCCCGCCGAAGCTCCACCCTTCTATTGCCATTTCTTCCCACTCCTTCAACCGACCACTACCTTCTCCGCTGCCCCTCCGTTTCTGCACCGCCAACTCTCCAAATCACGGCCTTAGGGTTTTAGCTTCGTCATCGCCTTCTGCTTATTCACCAAAACTTTCCAATCAATCTGAAGAAATTTCGATTGGATCTCTCCTTACCGGTCCGACCCGGGTACTTGCTACTATTCTATCTATATCCTTAACATTTTCGACCTTGATTGTCAAACTGGTTCAGAATGTTTGGCCGAGTTTGATTGCCCAATGTCTCGTAAATCCATGTACTGGGCTCAGTGCCTTCCAGCCGGCTGGCTCTTTGTTCTTCGCTGCACTAGTCGACCGCCCTGGCGGAAATCTCAACACGCCTTTGACGGTGGTGGCTGCGGGGTTGGCCAAGTGGCTGGATATTTACAGTGGGGTTCTGCTGGTTAGGGTTTTGCTGAGTTGGTTCCCCAATATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGTGATCCTTACTTGAACCTGTTCCGGAATATAATCCCTCCAATATTCGACACCCTGGATGTTAGCCCACTTTTGGCTTTTGCTGTTCTGGGCACACTAGGGTCAATTCTGAAAAAGTAGCAGGGGCATGTATTGAAGGAGGCTACGAGTGGATTTGGTTGGTTGGTTGGTTGGTTGGTTAGTGGCGGAATTTACGACGAGTATAAGGTATAATTCAATTCATCGAAATTTGGATTTGAGTTTTGGGGTTGTGGATATATCCTAATTTGGTTTTATTTCTGTTTTTCTTCTCCAGGGGATTTGA

mRNA sequence

ATGGCGTCTTCCCTAATCGCTTCTCAAGCTCTGCCCCTCCGACGCCCCGTCCTCCCGCCGAAGCTCCACCCTTCTATTGCCATTTCTTCCCACTCCTTCAACCGACCACTACCTTCTCCGCTGCCCCTCCGTTTCTGCACCGCCAACTCTCCAAATCACGGCCTTAGGGTTTTAGCTTCGTCATCGCCTTCTGCTTATTCACCAAAACTTTCCAATCAATCTGAAGAAATTTCGATTGGATCTCTCCTTACCGGTCCGACCCGGGTACTTGCTACTATTCTATCTATATCCTTAACATTTTCGACCTTGATTGTCAAACTGGTTCAGAATGTTTGGCCGAGTTTGATTGCCCAATGTCTCGTAAATCCATGTACTGGGCTCAGTGCCTTCCAGCCGGCTGGCTCTTTGTTCTTCGCTGCACTAGTCGACCGCCCTGGCGGAAATCTCAACACGCCTTTGACGGTGGTGGCTGCGGGGTTGGCCAAGTGGCTGGATATTTACAGTGGGGTTCTGCTGGTTAGGGTTTTGCTGAGTTGGTTCCCCAATATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGTGATCCTTACTTGAACCTGTTCCGGAATATAATCCCTCCAATATTCGACACCCTGGATGAGGCTACGAGTGGATTTGGTTGGTTGGTTGGTTGGTTGGTTAGTGGCGGAATTTACGACGAGTATAAGGGGATTTGA

Coding sequence (CDS)

ATGGCGTCTTCCCTAATCGCTTCTCAAGCTCTGCCCCTCCGACGCCCCGTCCTCCCGCCGAAGCTCCACCCTTCTATTGCCATTTCTTCCCACTCCTTCAACCGACCACTACCTTCTCCGCTGCCCCTCCGTTTCTGCACCGCCAACTCTCCAAATCACGGCCTTAGGGTTTTAGCTTCGTCATCGCCTTCTGCTTATTCACCAAAACTTTCCAATCAATCTGAAGAAATTTCGATTGGATCTCTCCTTACCGGTCCGACCCGGGTACTTGCTACTATTCTATCTATATCCTTAACATTTTCGACCTTGATTGTCAAACTGGTTCAGAATGTTTGGCCGAGTTTGATTGCCCAATGTCTCGTAAATCCATGTACTGGGCTCAGTGCCTTCCAGCCGGCTGGCTCTTTGTTCTTCGCTGCACTAGTCGACCGCCCTGGCGGAAATCTCAACACGCCTTTGACGGTGGTGGCTGCGGGGTTGGCCAAGTGGCTGGATATTTACAGTGGGGTTCTGCTGGTTAGGGTTTTGCTGAGTTGGTTCCCCAATATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGTGATCCTTACTTGAACCTGTTCCGGAATATAATCCCTCCAATATTCGACACCCTGGATGAGGCTACGAGTGGATTTGGTTGGTTGGTTGGTTGGTTGGTTAGTGGCGGAATTTACGACGAGTATAAGGGGATTTGA

Protein sequence

MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLASSSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCLVNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDEATSGFGWLVGWLVSGGIYDEYKGI

Homology

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BLAST of Csor.00g123620 vs. ExPASy Swiss-Prot
Match: Q9SUE0 (YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-2 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.7e-41
Identity = 108/214 (50.47%), Postives = 132/214 (61.68%), Query Frame = 0


Query: 8   SQALPLRRPVLP-PKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLASSSPSAY 67
           + +L LR  +L  P+L P I     S  R L   L L         H  R + SS+ ++ 
Sbjct: 6   TNSLALRASILANPRLPPPIIRPRLSLPRKLSFNLSL---------HNARTIVSSAVTSS 65

Query: 68  SPKLSNQSEEISIGSLLTGPTRVLAT-ILSISLTFSTLIVKL---VQNVWPSLIAQCLVN 127
           SP LS++          +  TR + T +L   +   +LI KL   + N+ P + A     
Sbjct: 66  SPVLSSKPPS---QFPFSDSTRSITTLVLLAGVVIKSLIQKLSVAIVNLSPQIQA----- 125

Query: 128 PCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPN 187
                 +F+ A  LFFA+L DRP G LNTPLTVVAAGL+KWLDIYSGVL+VRVLLSWFPN
Sbjct: 126 ------SFRTASPLFFASLRDRPAGYLNTPLTVVAAGLSKWLDIYSGVLMVRVLLSWFPN 185

Query: 188 IPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLD 217
           IPWDRQPLSAIRDLCDPYLNLFRNIIPP+FDTLD
Sbjct: 186 IPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLD 196

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BLAST of Csor.00g123620 vs. ExPASy Swiss-Prot
Match: Q9SRS3 (YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-1 PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.1e-40
Identity = 110/221 (49.77%), Postives = 138/221 (62.44%), Query Frame = 0


Query: 5   LIASQALPLRRPVLPPKLHPSIAISSHSF-NRPLPSPL-----PLRFCTANSPNHGLRVL 64
           + A  AL LR PV  P    S     H F N+P P+ L     P    +  +P   +R+ 
Sbjct: 1   MAAITALTLRSPVYLPSSATSPRF--HGFTNQPPPARLFFPLNPFPSLSIQNPK-SIRIS 60

Query: 65  ASSSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLI---VKLVQNVWPSL 124
           AS+SP   +P L  + +  +  S LTG TR LAT+ ++++  + ++   + L       +
Sbjct: 61  ASASPIT-TPILQTE-KSTARSSTLTGSTRSLATLAALAIAVTRVLAQKLSLAIQTSSPV 120

Query: 125 IAQCLVNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRV 184
           IA  L        +   AG +FFA+L DRP G LNTPLTVVA G+ KWLDIYSGVL+VRV
Sbjct: 121 IADGL------RFSLSTAGPVFFASLRDRPPGYLNTPLTVVAVGIKKWLDIYSGVLMVRV 180

Query: 185 LLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLD 217
           LLSWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLD
Sbjct: 181 LLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLD 210

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BLAST of Csor.00g123620 vs. ExPASy Swiss-Prot
Match: O78424 (Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.1e-09
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 149 LNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNII 208
           ++   T++ +    +L IY  +LL+RV L+WFPN+ W  QP  ++  + DPYL +FR I+
Sbjct: 1   MSNSFTLLFSSFIGFLQIYLILLLIRVSLTWFPNVNWYGQPFYSLSRITDPYLKMFRGIV 60

Query: 209 PPI 212
           PP+
Sbjct: 61  PPL 63

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BLAST of Csor.00g123620 vs. ExPASy Swiss-Prot
Match: Q9C595 (YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG2 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.1e-09
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 155 VVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPI 212
           VVA GL  +L+IY+ +L+VR++L+WFP+ P     ++ +  LCDPYLN+FR  IPP+
Sbjct: 133 VVANGLINFLNIYNTILVVRLVLTWFPSAP--PAIVNPLSTLCDPYLNIFRGFIPPL 187

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BLAST of Csor.00g123620 vs. ExPASy Swiss-Prot
Match: P51353 (Uncharacterized protein ycf19 OS=Porphyra purpurea OX=2787 GN=ycf19 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-07
Identity = 22/60 (36.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 153 LTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIF 212
           L ++   +A + +IY  ++L+++ L+WFP + W  +P  ++  + DPYL LFR  IPP+F
Sbjct: 8   LNLLLGSIANFSEIYLILILLKLSLAWFPTVNWYNEPFCSLNRITDPYLKLFRGSIPPMF 67

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BLAST of Csor.00g123620 vs. NCBI nr
Match: KAG6581763.1 (YlmG-like protein 1-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 479 bits (1233), Expect = 1.67e-170
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL
Sbjct: 61  SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 VNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180
           VNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF
Sbjct: 121 VNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180

Query: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDEATSGFGWLVGWLVSGGIYDEYKG 240
           PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDEATSGFGWLVGWLVSGGIYDEYKG
Sbjct: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDEATSGFGWLVGWLVSGGIYDEYKG 240

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BLAST of Csor.00g123620 vs. NCBI nr
Match: KAG7018212.1 (YlmG-like protein 1-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 425 bits (1092), Expect = 4.19e-149
Identity = 216/218 (99.08%), Postives = 217/218 (99.54%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL
Sbjct: 61  SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 VNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180
           VNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF
Sbjct: 121 VNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180

Query: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDEA 218
           PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLD +
Sbjct: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVS 218

[Close]

BLAST of Csor.00g123620 vs. NCBI nr
Match: XP_022956231.1 (ylmG homolog protein 1-2, chloroplastic [Cucurbita moschata] >XP_022956232.1 ylmG homolog protein 1-2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 420 bits (1080), Expect = 2.82e-147
Identity = 213/218 (97.71%), Postives = 215/218 (98.62%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPSAYSPKLSNQSE+I IGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL
Sbjct: 61  SSPSAYSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 VNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180
           VNPCTGL AFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF
Sbjct: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180

Query: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDEA 218
           PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLD +
Sbjct: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVS 218

[Close]

BLAST of Csor.00g123620 vs. NCBI nr
Match: XP_023527027.1 (ylmG homolog protein 1-2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419 bits (1077), Expect = 8.09e-147
Identity = 213/218 (97.71%), Postives = 214/218 (98.17%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQALPLRRPVLPPKLHPSIAI SHSFNRPLPSPLPLRFCTANSPNHGLRVLAS
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPSAYSPKLSNQSEEI IGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL
Sbjct: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 VNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180
           VNPCTGL AFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF
Sbjct: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180

Query: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDEA 218
           PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLD +
Sbjct: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVS 218

[Close]

BLAST of Csor.00g123620 vs. NCBI nr
Match: XP_022980718.1 (ylmG homolog protein 1-2, chloroplastic-like [Cucurbita maxima] >XP_022980719.1 ylmG homolog protein 1-2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 415 bits (1066), Expect = 3.84e-145
Identity = 211/218 (96.79%), Postives = 212/218 (97.25%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNR LPSPLPLRFCT NSPNHGLRVLAS
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRSLPSPLPLRFCTINSPNHGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPSAYSPK SNQSEEI IGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL
Sbjct: 61  SSPSAYSPKFSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 VNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180
           VNPCTGL AFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF
Sbjct: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180

Query: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDEA 218
           PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLD +
Sbjct: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVS 218

[Close]

BLAST of Csor.00g123620 vs. ExPASy TrEMBL
Match: A0A6J1GVR7 (ylmG homolog protein 1-2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457989 PE=4 SV=1)

HSP 1 Score: 420 bits (1080), Expect = 1.37e-147
Identity = 213/218 (97.71%), Postives = 215/218 (98.62%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPSAYSPKLSNQSE+I IGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL
Sbjct: 61  SSPSAYSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 VNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180
           VNPCTGL AFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF
Sbjct: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180

Query: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDEA 218
           PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLD +
Sbjct: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVS 218

[Close]

BLAST of Csor.00g123620 vs. ExPASy TrEMBL
Match: A0A6J1J015 (ylmG homolog protein 1-2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480002 PE=4 SV=1)

HSP 1 Score: 415 bits (1066), Expect = 1.86e-145
Identity = 211/218 (96.79%), Postives = 212/218 (97.25%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNR LPSPLPLRFCT NSPNHGLRVLAS
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRSLPSPLPLRFCTINSPNHGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPSAYSPK SNQSEEI IGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL
Sbjct: 61  SSPSAYSPKFSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 VNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180
           VNPCTGL AFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF
Sbjct: 121 VNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 180

Query: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDEA 218
           PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLD +
Sbjct: 181 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVS 218

[Close]

BLAST of Csor.00g123620 vs. ExPASy TrEMBL
Match: A0A5D3C9Z4 (YlmG-like protein 1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00210 PE=4 SV=1)

HSP 1 Score: 309 bits (791), Expect = 1.12e-103
Identity = 163/219 (74.43%), Postives = 180/219 (82.19%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQ+LPLRRP+LPP L            RP PSPL L   T  SPN GLRVLAS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLR-----------RPPPSPLLLPLSTVKSPNLGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SS S+YSPKLS QS+EI I  LLTGPTR+LAT+LS+SL FST+IVKLVQNVWP LI QCL
Sbjct: 61  SSLSSYSPKLSRQSQEIPISPLLTGPTRILATLLSVSLAFSTVIVKLVQNVWPILIPQCL 120

Query: 121 VN-PCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 180
           +N PC+GL A QPAGSLFFA+L +   G LNTPLTVVA GLAKWLDIYSG+L+VRVLLSW
Sbjct: 121 INNPCSGLGALQPAGSLFFASLRNPSVGGLNTPLTVVAVGLAKWLDIYSGILMVRVLLSW 180

Query: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDEA 218
           FPNIPW+RQPLSAIRDLCDPYLNLFRNIIPP+FDTLD +
Sbjct: 181 FPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVS 208

[Close]

BLAST of Csor.00g123620 vs. ExPASy TrEMBL
Match: A0A1S3CC91 (ylmG homolog protein 1-2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103499156 PE=4 SV=1)

HSP 1 Score: 306 bits (785), Expect = 9.17e-103
Identity = 162/219 (73.97%), Postives = 179/219 (81.74%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQ+LPLRRP+LPP L            RP PSPL L   T  SPN GLRVLAS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLR-----------RPPPSPLLLPLSTVKSPNLGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SS S+YSPKLS Q +EI I  LLTGPTR+LAT+LS+SL FST+IVKLVQNVWP LI QCL
Sbjct: 61  SSLSSYSPKLSRQLQEIPISPLLTGPTRILATLLSVSLAFSTVIVKLVQNVWPILIPQCL 120

Query: 121 VN-PCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 180
           +N PC+GL A QPAGSLFFA+L +   G LNTPLTVVA GLAKWLDIYSG+L+VRVLLSW
Sbjct: 121 INNPCSGLGALQPAGSLFFASLRNPSVGGLNTPLTVVAVGLAKWLDIYSGILMVRVLLSW 180

Query: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDEA 218
           FPNIPW+RQPLSAIRDLCDPYLNLFRNIIPP+FDTLD +
Sbjct: 181 FPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVS 208

[Close]

BLAST of Csor.00g123620 vs. ExPASy TrEMBL
Match: A0A5A7VBM7 (YlmG-like protein 1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G00220 PE=4 SV=1)

HSP 1 Score: 306 bits (785), Expect = 9.17e-103
Identity = 162/219 (73.97%), Postives = 179/219 (81.74%), Query Frame = 0


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQ+LPLRRP+LPP L            RP PSPL L   T  SPN GLRVLAS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLR-----------RPPPSPLLLPLSTVKSPNLGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SS S+YSPKLS Q +EI I  LLTGPTR+LAT+LS+SL FST+IVKLVQNVWP LI QCL
Sbjct: 61  SSLSSYSPKLSRQLQEIPISPLLTGPTRILATLLSVSLAFSTVIVKLVQNVWPILIPQCL 120

Query: 121 VN-PCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 180
           +N PC+GL A QPAGSLFFA+L +   G LNTPLTVVA GLAKWLDIYSG+L+VRVLLSW
Sbjct: 121 INNPCSGLGALQPAGSLFFASLRNPSVGGLNTPLTVVAVGLAKWLDIYSGILMVRVLLSW 180

Query: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDEA 218
           FPNIPW+RQPLSAIRDLCDPYLNLFRNIIPP+FDTLD +
Sbjct: 181 FPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVS 208

[Close]

BLAST of Csor.00g123620 vs. TAIR 10
Match: AT4G27990.1 (YGGT family protein )

HSP 1 Score: 169.5 bits (428), Expect = 3.4e-42
Identity = 108/214 (50.47%), Postives = 132/214 (61.68%), Query Frame = 0


Query: 8   SQALPLRRPVLP-PKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLASSSPSAY 67
           + +L LR  +L  P+L P I     S  R L   L L         H  R + SS+ ++ 
Sbjct: 6   TNSLALRASILANPRLPPPIIRPRLSLPRKLSFNLSL---------HNARTIVSSAVTSS 65

Query: 68  SPKLSNQSEEISIGSLLTGPTRVLAT-ILSISLTFSTLIVKL---VQNVWPSLIAQCLVN 127
           SP LS++          +  TR + T +L   +   +LI KL   + N+ P + A     
Sbjct: 66  SPVLSSKPPS---QFPFSDSTRSITTLVLLAGVVIKSLIQKLSVAIVNLSPQIQA----- 125

Query: 128 PCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPN 187
                 +F+ A  LFFA+L DRP G LNTPLTVVAAGL+KWLDIYSGVL+VRVLLSWFPN
Sbjct: 126 ------SFRTASPLFFASLRDRPAGYLNTPLTVVAAGLSKWLDIYSGVLMVRVLLSWFPN 185

Query: 188 IPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLD 217
           IPWDRQPLSAIRDLCDPYLNLFRNIIPP+FDTLD
Sbjct: 186 IPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLD 196

[Close]

BLAST of Csor.00g123620 vs. TAIR 10
Match: AT3G07430.1 (YGGT family protein )

HSP 1 Score: 168.3 bits (425), Expect = 7.5e-42
Identity = 110/221 (49.77%), Postives = 138/221 (62.44%), Query Frame = 0


Query: 5   LIASQALPLRRPVLPPKLHPSIAISSHSF-NRPLPSPL-----PLRFCTANSPNHGLRVL 64
           + A  AL LR PV  P    S     H F N+P P+ L     P    +  +P   +R+ 
Sbjct: 1   MAAITALTLRSPVYLPSSATSPRF--HGFTNQPPPARLFFPLNPFPSLSIQNPK-SIRIS 60

Query: 65  ASSSPSAYSPKLSNQSEEISIGSLLTGPTRVLATILSISLTFSTLI---VKLVQNVWPSL 124
           AS+SP   +P L  + +  +  S LTG TR LAT+ ++++  + ++   + L       +
Sbjct: 61  ASASPIT-TPILQTE-KSTARSSTLTGSTRSLATLAALAIAVTRVLAQKLSLAIQTSSPV 120

Query: 125 IAQCLVNPCTGLSAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRV 184
           IA  L        +   AG +FFA+L DRP G LNTPLTVVA G+ KWLDIYSGVL+VRV
Sbjct: 121 IADGL------RFSLSTAGPVFFASLRDRPPGYLNTPLTVVAVGIKKWLDIYSGVLMVRV 180

Query: 185 LLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLD 217
           LLSWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLD
Sbjct: 181 LLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLD 210

[Close]

BLAST of Csor.00g123620 vs. TAIR 10
Match: AT5G21920.1 (YGGT family protein )

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-10
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 155 VVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPI 212
           VVA GL  +L+IY+ +L+VR++L+WFP+ P     ++ +  LCDPYLN+FR  IPP+
Sbjct: 133 VVANGLINFLNIYNTILVVRLVLTWFPSAP--PAIVNPLSTLCDPYLNIFRGFIPPL 187

[Close]

BLAST of Csor.00g123620 vs. TAIR 10
Match: AT5G21920.2 (YGGT family protein )

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-10
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 155 VVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPI 212
           VVA GL  +L+IY+ +L+VR++L+WFP+ P     ++ +  LCDPYLN+FR  IPP+
Sbjct: 120 VVANGLINFLNIYNTILVVRLVLTWFPSAP--PAIVNPLSTLCDPYLNIFRGFIPPL 174

The following BLAST results are available for this feature:

BLAST of Csor.00g123620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUE0	4.7e-41	50.47	YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1...	[more]
Q9SRS3	1.1e-40	49.77	YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1...	[more]
O78424	8.1e-09	39.68	Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1	[more]
Q9C595	8.1e-09	49.12	YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG2 P...	[more]
P51353	2.0e-07	36.67	Uncharacterized protein ycf19 OS=Porphyra purpurea OX=2787 GN=ycf19 PE=3 SV=1	[more]

BLAST of Csor.00g123620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581763.1	1.67e-170	100.00	YlmG-like protein 1-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sor...	[more]
KAG7018212.1	4.19e-149	99.08	YlmG-like protein 1-2, chloroplastic, partial [Cucurbita argyrosperma subsp. arg...	[more]
XP_022956231.1	2.82e-147	97.71	ylmG homolog protein 1-2, chloroplastic [Cucurbita moschata] >XP_022956232.1 ylm...	[more]
XP_023527027.1	8.09e-147	97.71	ylmG homolog protein 1-2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022980718.1	3.84e-145	96.79	ylmG homolog protein 1-2, chloroplastic-like [Cucurbita maxima] >XP_022980719.1 ...	[more]

BLAST of Csor.00g123620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GVR7	1.37e-147	97.71	ylmG homolog protein 1-2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1J015	1.86e-145	96.79	ylmG homolog protein 1-2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A5D3C9Z4	1.12e-103	74.43	YlmG-like protein 1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold60...	[more]
A0A1S3CC91	9.17e-103	73.97	ylmG homolog protein 1-2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A5A7VBM7	9.17e-103	73.97	YlmG-like protein 1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90...	[more]

BLAST of Csor.00g123620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27990.1	3.4e-42	50.47	YGGT family protein	[more]
AT3G07430.1	7.5e-42	49.77	YGGT family protein	[more]
AT5G21920.1	5.8e-10	49.12	YGGT family protein	[more]
AT5G21920.2	5.8e-10	49.12	YGGT family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 164..212 e-value: 2.7E-11 score: 43.7
IPR003425	CCB3/YggT	PANTHER	PTHR33219	YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC	coord: 50..217
None	No IPR available	PANTHER	PTHR33219:SF10	YLMG HOMOLOG PROTEIN 1-2, CHLOROPLASTIC	coord: 50..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g123620.m01	Csor.00g123620.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0090143	nucleoid organization
cellular_component	GO:0016020	membrane