Csor.00g121000 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g121000
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Transcription factor protein
Location	Csor_Chr04: 19899049 .. 19899770 (-)
RNA-Seq Expression	Csor.00g121000
Synteny	Csor.00g121000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACCCGGAGATCAAGGCAGCCCGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACACCTCGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTACAACTTCCCTCCTCACAACTTCTTATACTCAAATCTACATTTTTGGGGGAGAGAAAAGAAAAAAGAAAATCAAATGTTTGTGTTGCTTTAAGCTAAAGATTCTGATTGTCGTGATGGGAGGTGTTCATATTTGACTCTATTATTATTATACACTTAATTCATGGCACTGATTGGAAATGTACGGTCGGTGGAAACAAACTCCATTGGGGAGTCTAAGTCAATTAAAGAAATTAACAATAACATTAGCTAAGTAAAGTAATTCAAAAGTTTTGGATTTTAATTGGGGTTTCCACAAAACATATAATTAAATCAAACCCACTTCATTCAAAATGGCCTAAACAAACAAACCTAAAGTACATCCAAGTGTTTGCTTTTTGTTTAATTTCAGATTTGACATTATTATTATTATTTAATATTTTAATTTGTTCTTATCTGTTCTTCAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGACCTAAGTGAAAGGCTCTCTCAACTCTTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAG

mRNA sequence

ATGTCTACCCGGAGATCAAGGCAGCCCGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACACCTCGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGACCTAAGTGAAAGGCTCTCTCAACTCTTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAG

Coding sequence (CDS)

ATGTCTACCCGGAGATCAAGGCAGCCCGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACACCTCGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGACCTAAGTGAAAGGCTCTCTCAACTCTTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAG

Protein sequence

MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

Homology

[Close]

BLAST of Csor.00g121000 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.7e-31
Identity = 71/92 (77.17%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MSTR---RSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNL 60
          MS+R   RSRQ G+SRISDDQI +L+SKL+HL+PE+R RRSDKVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLSTIDADSAEAAIIRSLI 90
          HREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Csor.00g121000 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.3e-28
Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1  MSTRRSRQ-PGASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLH 60
          MS RRSRQ   ASRISDDQ+I+L+SKLR  +PEI   RRSDKVSASKVLQETCNYIR LH
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLH 60

Query: 61 REVDDLSERLSQLLSTIDADSAEAAIIRSLIM 91
          REVD+LS+RLSQLL ++D DS EAA+IRSL+M
Sbjct: 61 REVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Csor.00g121000 vs. ExPASy Swiss-Prot
Match: Q9FLE9 (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-27
Identity = 67/92 (72.83%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MSTRRSRQ-PGASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLH 60
          MS RRSRQ   A RISD+Q+I+L+SKLR ++PEI + RRSDK SASKVLQETCNYIRNL+
Sbjct: 1  MSNRRSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLN 60

Query: 61 REVDDLSERLSQLLSTIDADSAEAAIIRSLIM 91
          REVD+LSERLSQLL ++D DS EAA+IRSL+M
Sbjct: 61 REVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Csor.00g121000 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-25
Identity = 62/92 (67.39%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MSTR--RSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLH 60
          MS+R  RSRQ G+SRI+D+QI +L+SKL+ L+PE R R +D+V +S+VLQETCNYIR+LH
Sbjct: 1  MSSRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSQLLSTIDADSAEAAIIRSLIM 91
          +EVDDLSERLS+LL+T D  SA+AAIIRSL+M
Sbjct: 61 QEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Csor.00g121000 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-25
Identity = 62/92 (67.39%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MSTR--RSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLH 60
          MS+R  RSRQ G+SRI+D+QI +L+SKL+ L+PE R R +D+V +S+VLQETCNYIR+LH
Sbjct: 1  MSSRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSQLLSTIDADSAEAAIIRSLIM 91
          +EVDDLSERLS+LL+T D  SA+AAIIRSL+M
Sbjct: 61 QEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Csor.00g121000 vs. NCBI nr
Match: XP_023548992.1 (transcription factor PRE6-like [Cucurbita pepo subsp. pepo] >KAG6602487.1 Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173 bits (438), Expect = 3.59e-54
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
          MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91
          VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91

[Close]

BLAST of Csor.00g121000 vs. NCBI nr
Match: KAG7033162.1 (Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173 bits (438), Expect = 1.18e-53
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1   MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
           MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE
Sbjct: 39  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 98

Query: 61  VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91
           VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 99  VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 129

[Close]

BLAST of Csor.00g121000 vs. NCBI nr
Match: XP_022952488.1 (transcription factor PRE6-like, partial [Cucurbita moschata])

HSP 1 Score: 171 bits (434), Expect = 9.36e-53
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1   MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
           +STRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE
Sbjct: 60  ISTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 119

Query: 61  VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91
           VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 120 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 150

[Close]

BLAST of Csor.00g121000 vs. NCBI nr
Match: XP_022134204.1 (transcription factor PRE6 [Momordica charantia])

HSP 1 Score: 163 bits (413), Expect = 2.34e-50
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
          MS+RRSRQ G SRISDDQIIEL+SKLR LVPEIRHRRSDKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSGGSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91
          VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91

[Close]

BLAST of Csor.00g121000 vs. NCBI nr
Match: XP_004151201.2 (transcription factor PRE6 [Cucumis sativus] >XP_008459306.1 PREDICTED: transcription factor PRE6 [Cucumis melo] >KAA0038157.1 transcription factor PRE6 [Cucumis melo var. makuwa] >KGN52451.1 hypothetical protein Csa_009099 [Cucumis sativus] >TYK02197.1 transcription factor PRE6 [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (403), Expect = 7.85e-49
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
          MS+RRSRQ  ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91
          VDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Csor.00g121000 vs. ExPASy TrEMBL
Match: A0A6J1GKQ6 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111455160 PE=4 SV=1)

HSP 1 Score: 171 bits (434), Expect = 4.53e-53
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1   MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
           +STRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE
Sbjct: 60  ISTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 119

Query: 61  VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91
           VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 120 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 150

[Close]

BLAST of Csor.00g121000 vs. ExPASy TrEMBL
Match: A0A6J1BY51 (transcription factor PRE6 OS=Momordica charantia OX=3673 GN=LOC111006522 PE=4 SV=1)

HSP 1 Score: 163 bits (413), Expect = 1.13e-50
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
          MS+RRSRQ G SRISDDQIIEL+SKLR LVPEIRHRRSDKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSGGSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91
          VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91

[Close]

BLAST of Csor.00g121000 vs. ExPASy TrEMBL
Match: A0A5A7T970 (Transcription factor PRE6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold33818G00010 PE=4 SV=1)

HSP 1 Score: 159 bits (403), Expect = 3.80e-49
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
          MS+RRSRQ  ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91
          VDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Csor.00g121000 vs. ExPASy TrEMBL
Match: A0A0A0KXB9 (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1)

HSP 1 Score: 159 bits (403), Expect = 3.80e-49
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
          MS+RRSRQ  ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91
          VDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Csor.00g121000 vs. ExPASy TrEMBL
Match: A0A1S3CB29 (transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1)

HSP 1 Score: 159 bits (403), Expect = 3.80e-49
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
          MS+RRSRQ  ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91
          VDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Csor.00g121000 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 135.2 bits (339), Expect = 2.7e-32
Identity = 71/92 (77.17%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MSTR---RSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNL 60
          MS+R   RSRQ G+SRISDDQI +L+SKL+HL+PE+R RRSDKVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLSTIDADSAEAAIIRSLI 90
          HREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Csor.00g121000 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-29
Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1  MSTRRSRQ-PGASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLH 60
          MS RRSRQ   ASRISDDQ+I+L+SKLR  +PEI   RRSDKVSASKVLQETCNYIR LH
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLH 60

Query: 61 REVDDLSERLSQLLSTIDADSAEAAIIRSLIM 91
          REVD+LS+RLSQLL ++D DS EAA+IRSL+M
Sbjct: 61 REVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Csor.00g121000 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 122.5 bits (306), Expect = 1.8e-28
Identity = 67/92 (72.83%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MSTRRSRQ-PGASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLH 60
          MS RRSRQ   A RISD+Q+I+L+SKLR ++PEI + RRSDK SASKVLQETCNYIRNL+
Sbjct: 1  MSNRRSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLN 60

Query: 61 REVDDLSERLSQLLSTIDADSAEAAIIRSLIM 91
          REVD+LSERLSQLL ++D DS EAA+IRSL+M
Sbjct: 61 REVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Csor.00g121000 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 114.8 bits (286), Expect = 3.7e-26
Identity = 64/90 (71.11%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 2  STRRSRQ-PGASRISDDQIIELISKLRHLVPEIR-HRRSDKVSASKVLQETCNYIRNLHR 61
          S+RRSRQ   +SRISDDQI +LISKLR  +PEIR +RRS+ VSASKVLQETCNYIRNL++
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 62 EVDDLSERLSQLLSTIDADSAEAAIIRSLI 90
          E DDLS+RL+QLL +ID +S +AA+IRSLI
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of Csor.00g121000 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 111.3 bits (277), Expect = 4.1e-25
Identity = 64/95 (67.37%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1  MSTRRSR---QPGASRISDDQIIELISKLRHLVPEIR-HRRSDKVSASKVLQETCNYIRN 60
          MS RRSR     G SRIS+DQI +LI KL+ L+PE+R  RRSDKVSA++VLQ+TCNYIRN
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 92
          LHREVDDLSERLS+LL+  ++D+A+AA+IRSL+ Q
Sbjct: 61 LHREVDDLSERLSELLA--NSDTAQAALIRSLLTQ 93

The following BLAST results are available for this feature:

BLAST of Csor.00g121000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	3.7e-31	77.17	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q9LJX1	2.3e-28	75.00	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
Q9FLE9	2.5e-27	72.83	Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1	[more]
B8APB5	1.1e-25	67.39	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	1.1e-25	67.39	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]

BLAST of Csor.00g121000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548992.1	3.59e-54	100.00	transcription factor PRE6-like [Cucurbita pepo subsp. pepo] >KAG6602487.1 Transc...	[more]
KAG7033162.1	1.18e-53	100.00	Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022952488.1	9.36e-53	98.90	transcription factor PRE6-like, partial [Cucurbita moschata]	[more]
XP_022134204.1	2.34e-50	94.51	transcription factor PRE6 [Momordica charantia]	[more]
XP_004151201.2	7.85e-49	92.31	transcription factor PRE6 [Cucumis sativus] >XP_008459306.1 PREDICTED: transcrip...	[more]

BLAST of Csor.00g121000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GKQ6	4.53e-53	98.90	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111455160 PE=...	[more]
A0A6J1BY51	1.13e-50	94.51	transcription factor PRE6 OS=Momordica charantia OX=3673 GN=LOC111006522 PE=4 SV...	[more]
A0A5A7T970	3.80e-49	92.31	Transcription factor PRE6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KXB9	3.80e-49	92.31	Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1	[more]
A0A1S3CB29	3.80e-49	92.31	transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1	[more]

BLAST of Csor.00g121000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	2.7e-32	77.17	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G28857.1	1.6e-29	75.00	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G39860.1	1.8e-28	72.83	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G15160.1	3.7e-26	71.11	BANQUO 2	[more]
AT1G74500.1	4.1e-25	67.37	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..74
None	No IPR available	PANTHER	PTHR46446:SF28	TRANSCRIPTION REGULATOR	coord: 1..90
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 8..74 e-value: 4.73965E-22 score: 79.2695
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 3..86 e-value: 2.3E-9 score: 39.0
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 17..76
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 17..58 e-value: 2.1E-5 score: 24.4
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 3..57 score: 10.524636
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g121000.m01	Csor.00g121000.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity