![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Csor.00g121000 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTACCCGGAGATCAAGGCAGCCCGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACACCTCGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTACAACTTCCCTCCTCACAACTTCTTATACTCAAATCTACATTTTTGGGGGAGAGAAAAGAAAAAAGAAAATCAAATGTTTGTGTTGCTTTAAGCTAAAGATTCTGATTGTCGTGATGGGAGGTGTTCATATTTGACTCTATTATTATTATACACTTAATTCATGGCACTGATTGGAAATGTACGGTCGGTGGAAACAAACTCCATTGGGGAGTCTAAGTCAATTAAAGAAATTAACAATAACATTAGCTAAGTAAAGTAATTCAAAAGTTTTGGATTTTAATTGGGGTTTCCACAAAACATATAATTAAATCAAACCCACTTCATTCAAAATGGCCTAAACAAACAAACCTAAAGTACATCCAAGTGTTTGCTTTTTGTTTAATTTCAGATTTGACATTATTATTATTATTTAATATTTTAATTTGTTCTTATCTGTTCTTCAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGACCTAAGTGAAAGGCTCTCTCAACTCTTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAG ATGTCTACCCGGAGATCAAGGCAGCCCGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACACCTCGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGACCTAAGTGAAAGGCTCTCTCAACTCTTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAG ATGTCTACCCGGAGATCAAGGCAGCCCGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACACCTCGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGACCTAAGTGAAAGGCTCTCTCAACTCTTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAG MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ Homology
BLAST of Csor.00g121000 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 3.7e-31 Identity = 71/92 (77.17%), Postives = 84/92 (91.30%), Query Frame = 0
BLAST of Csor.00g121000 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 2.3e-28 Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 0
BLAST of Csor.00g121000 vs. ExPASy Swiss-Prot
Match: Q9FLE9 (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 2.5e-27 Identity = 67/92 (72.83%), Postives = 80/92 (86.96%), Query Frame = 0
BLAST of Csor.00g121000 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 1.1e-25 Identity = 62/92 (67.39%), Postives = 80/92 (86.96%), Query Frame = 0
BLAST of Csor.00g121000 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 1.1e-25 Identity = 62/92 (67.39%), Postives = 80/92 (86.96%), Query Frame = 0
BLAST of Csor.00g121000 vs. NCBI nr
Match: XP_023548992.1 (transcription factor PRE6-like [Cucurbita pepo subsp. pepo] >KAG6602487.1 Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 173 bits (438), Expect = 3.59e-54 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of Csor.00g121000 vs. NCBI nr
Match: KAG7033162.1 (Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 173 bits (438), Expect = 1.18e-53 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of Csor.00g121000 vs. NCBI nr
Match: XP_022952488.1 (transcription factor PRE6-like, partial [Cucurbita moschata]) HSP 1 Score: 171 bits (434), Expect = 9.36e-53 Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of Csor.00g121000 vs. NCBI nr
Match: XP_022134204.1 (transcription factor PRE6 [Momordica charantia]) HSP 1 Score: 163 bits (413), Expect = 2.34e-50 Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0
BLAST of Csor.00g121000 vs. NCBI nr
Match: XP_004151201.2 (transcription factor PRE6 [Cucumis sativus] >XP_008459306.1 PREDICTED: transcription factor PRE6 [Cucumis melo] >KAA0038157.1 transcription factor PRE6 [Cucumis melo var. makuwa] >KGN52451.1 hypothetical protein Csa_009099 [Cucumis sativus] >TYK02197.1 transcription factor PRE6 [Cucumis melo var. makuwa]) HSP 1 Score: 159 bits (403), Expect = 7.85e-49 Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of Csor.00g121000 vs. ExPASy TrEMBL
Match: A0A6J1GKQ6 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111455160 PE=4 SV=1) HSP 1 Score: 171 bits (434), Expect = 4.53e-53 Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of Csor.00g121000 vs. ExPASy TrEMBL
Match: A0A6J1BY51 (transcription factor PRE6 OS=Momordica charantia OX=3673 GN=LOC111006522 PE=4 SV=1) HSP 1 Score: 163 bits (413), Expect = 1.13e-50 Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0
BLAST of Csor.00g121000 vs. ExPASy TrEMBL
Match: A0A5A7T970 (Transcription factor PRE6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold33818G00010 PE=4 SV=1) HSP 1 Score: 159 bits (403), Expect = 3.80e-49 Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of Csor.00g121000 vs. ExPASy TrEMBL
Match: A0A0A0KXB9 (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1) HSP 1 Score: 159 bits (403), Expect = 3.80e-49 Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of Csor.00g121000 vs. ExPASy TrEMBL
Match: A0A1S3CB29 (transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1) HSP 1 Score: 159 bits (403), Expect = 3.80e-49 Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of Csor.00g121000 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 135.2 bits (339), Expect = 2.7e-32 Identity = 71/92 (77.17%), Postives = 84/92 (91.30%), Query Frame = 0
BLAST of Csor.00g121000 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein ) HSP 1 Score: 125.9 bits (315), Expect = 1.6e-29 Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 0
BLAST of Csor.00g121000 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein ) HSP 1 Score: 122.5 bits (306), Expect = 1.8e-28 Identity = 67/92 (72.83%), Postives = 80/92 (86.96%), Query Frame = 0
BLAST of Csor.00g121000 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 ) HSP 1 Score: 114.8 bits (286), Expect = 3.7e-26 Identity = 64/90 (71.11%), Postives = 78/90 (86.67%), Query Frame = 0
BLAST of Csor.00g121000 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 ) HSP 1 Score: 111.3 bits (277), Expect = 4.1e-25 Identity = 64/95 (67.37%), Postives = 80/95 (84.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|