Csor.00g120870 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g120870
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr04: 19973143 .. 19973544 (+)
RNA-Seq ExpressionCsor.00g120870
SyntenyCsor.00g120870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCATTCTTGGTACACAAACAAATTTCCCATGTTTTTCTTCTATGTTCACTCCCTTGATTCTCATAGTTCTTCATTTTGTCTTCAGGGTTTGGCGTGGGAGCGATGGAAGCAGCGGCACATCCCGGCTATGATACCAGTTCATCGCAAAAGGTAAGCTTTTTGGAAGCCTAGAAATGGAGTTTTTGGAAGATATTGGTGTAATTAACGAAGGGGTTTGTTTGTGTTGGCAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCCCCTTCTTCCCCTCCTCTGCCGCCCTCTTCATGA

mRNA sequence

ATGGATCATCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCATTCTTGGGTTTGGCGTGGGAGCGATGGAAGCAGCGGCACATCCCGGCTATGATACCAGTTCATCGCAAAAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCCCCTTCTTCCCCTCCTCTGCCGCCCTCTTCATGA

Coding sequence (CDS)

ATGGATCATCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCATTCTTGGGTTTGGCGTGGGAGCGATGGAAGCAGCGGCACATCCCGGCTATGATACCAGTTCATCGCAAAAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCCCCTTCTTCCCCTCCTCTGCCGCCCTCTTCATGA

Protein sequence

MDHPKIFPILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTNTRSGYLTPPSSPPLPPSS
Homology
BLAST of Csor.00g120870 vs. NCBI nr
Match: KAG6602500.1 (hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033174.1 hypothetical protein SDJN02_07228 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165 bits (417), Expect = 2.80e-51
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0

Query: 1  MDHPKIFPILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGP 60
          MDHPKIFPILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGP
Sbjct: 1  MDHPKIFPILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGP 60

Query: 61 NTNTRSGYLTPPSSPPLPPSS 81
          NTNTRSGYLTPPSSPPLPPSS
Sbjct: 61 NTNTRSGYLTPPSSPPLPPSS 81

BLAST of Csor.00g120870 vs. NCBI nr
Match: XP_023527249.1 (uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144 bits (363), Expect = 4.60e-43
Identity = 73/78 (93.59%), Postives = 73/78 (93.59%), Query Frame = 0

Query: 4  PKIFPILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTN 63
          PKIFPILLLLFII GFGVGAMEAAAH G D SSSQKKSGGKPRKVMMEVMDYADPGPNTN
Sbjct: 2  PKIFPILLLLFIIFGFGVGAMEAAAHAGCDISSSQKKSGGKPRKVMMEVMDYADPGPNTN 61

Query: 64 TRSGYLTPPSSPPLPPSS 81
          TRSGYLTPPSSPP PPSS
Sbjct: 62 TRSGYLTPPSSPPPPPSS 79

BLAST of Csor.00g120870 vs. NCBI nr
Match: XP_023527257.1 (uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137 bits (346), Expect = 1.75e-40
Identity = 72/78 (92.31%), Postives = 72/78 (92.31%), Query Frame = 0

Query: 4  PKIFPILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTN 63
          PKIFPILLLLFII GFGVGAMEAAAH G D SSSQK SGGKPRKVMMEVMDYADPGPNTN
Sbjct: 2  PKIFPILLLLFIIFGFGVGAMEAAAHAGCDISSSQK-SGGKPRKVMMEVMDYADPGPNTN 61

Query: 64 TRSGYLTPPSSPPLPPSS 81
          TRSGYLTPPSSPP PPSS
Sbjct: 62 TRSGYLTPPSSPPPPPSS 78

BLAST of Csor.00g120870 vs. NCBI nr
Match: KGN52468.1 (hypothetical protein Csa_007886 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.85e-16
Identity = 45/82 (54.88%), Postives = 53/82 (64.63%), Query Frame = 0

Query: 1  MDHPKIFPILLLL--FIILGFGVGA----MEAAAH-PGYDTSSSQKKSGGKPRKVMMEVM 60
          M HPK+F  LLLL  F++L F  G     +E+  H      S S K  GGK RK+M+E+M
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60

Query: 61 DYADPGPNTNTRSGYLTPPSSP 75
          DYADPGPNTNTRSGYL PP  P
Sbjct: 61 DYADPGPNTNTRSGYLNPPPPP 82

BLAST of Csor.00g120870 vs. NCBI nr
Match: KAA0039487.1 (hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK15242.1 hypothetical protein E5676_scaffold892G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 3.68e-11
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 24 MEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTNTRS-GYLTPPSSP 75
          +E+  H     SSS K  GGK RK+M+E+MDYADPGPN NTRS GYL PP  P
Sbjct: 2  IESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPP 54

BLAST of Csor.00g120870 vs. ExPASy TrEMBL
Match: A0A0A0KSB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.98e-17
Identity = 45/82 (54.88%), Postives = 53/82 (64.63%), Query Frame = 0

Query: 1  MDHPKIFPILLLL--FIILGFGVGA----MEAAAH-PGYDTSSSQKKSGGKPRKVMMEVM 60
          M HPK+F  LLLL  F++L F  G     +E+  H      S S K  GGK RK+M+E+M
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60

Query: 61 DYADPGPNTNTRSGYLTPPSSP 75
          DYADPGPNTNTRSGYL PP  P
Sbjct: 61 DYADPGPNTNTRSGYLNPPPPP 82

BLAST of Csor.00g120870 vs. ExPASy TrEMBL
Match: A0A5D3CUT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00160 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.78e-11
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 24 MEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTNTRS-GYLTPPSSP 75
          +E+  H     SSS K  GGK RK+M+E+MDYADPGPN NTRS GYL PP  P
Sbjct: 2  IESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPP 54

BLAST of Csor.00g120870 vs. ExPASy TrEMBL
Match: A0A7J7NY32 (Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_007365 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.64e-09
Identity = 38/72 (52.78%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 9  ILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTNTRSG- 68
          IL L F   GFG G     +  G D S+S  K  G  R+ MMEVMDY+DP PNTN ++G 
Sbjct: 16 ILSLFFSSQGFGFGRNSMVS--GNDNSNSVLKGNGNVRE-MMEVMDYSDPEPNTNPKTGN 75

Query: 69 YLTPPSSPPLPP 79
           LTPPS PP PP
Sbjct: 76 LLTPPSPPPSPP 84

BLAST of Csor.00g120870 vs. ExPASy TrEMBL
Match: A0A540K4V3 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_045201 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.03e-07
Identity = 35/68 (51.47%), Postives = 41/68 (60.29%), Query Frame = 0

Query: 10 LLLLFIILGFGVGAMEAAAHPGYDTSSS-QKKSGGKPRKVMMEVMDYADPGPNTNTRSGY 69
          LL LF   GFG   ME A H   D+S    K++ GK RK M+ VMDYADP PN N R+GY
Sbjct: 15 LLALFCTHGFGRKLMETAEHGEEDSSVLVSKENDGKSRK-MITVMDYADPEPNVNPRTGY 74

Query: 70 L-TPPSSP 75
          +  PP  P
Sbjct: 75 IFAPPPQP 81

BLAST of Csor.00g120870 vs. ExPASy TrEMBL
Match: A0A444ZPX5 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B04g073244 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.72e-07
Identity = 38/80 (47.50%), Postives = 46/80 (57.50%), Query Frame = 0

Query: 1  MDHPKIFPILL--LLFIILGFG-VGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYAD 60
          M H  +  +LL  LLF+  GFG VG ME   H  + T S+Q+   G P     EV DYAD
Sbjct: 1  MGHSCLLLLLLSSLLFVGHGFGRVGLMETHEHT-HSTHSTQEY--GTPMMASFEVEDYAD 60

Query: 61 PGPNTNTRSGYL--TPPSSP 75
          P PNTN ++GYL   PP SP
Sbjct: 61 PQPNTNPKNGYLYSPPPPSP 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6602500.12.80e-51100.00hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023527249.14.60e-4393.59uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023527257.11.75e-4092.31uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo][more]
KGN52468.11.85e-1654.88hypothetical protein Csa_007886 [Cucumis sativus][more]
KAA0039487.13.68e-1160.38hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK1524... [more]
Match NameE-valueIdentityDescription
A0A0A0KSB78.98e-1754.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1[more]
A0A5D3CUT51.78e-1160.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A7J7NY322.64e-0952.78Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_007365 PE=4 SV=1[more]
A0A540K4V31.03e-0751.47Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_045201 PE=4 SV=1[more]
A0A444ZPX55.72e-0747.50Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B04g073244 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..81
NoneNo IPR availablePANTHERPTHR37908TRANSMEMBRANE PROTEINcoord: 10..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g120870.m01Csor.00g120870.m01mRNA