Csor.00g120860 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g120860
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 19974063 .. 19974547 (+)
RNA-Seq Expression	Csor.00g120860
Synteny	Csor.00g120860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAGGACGACATGTCAAACATTGTATCAGTTGATCAACTCGACTTGGTTCATAGGCATGGATTAGAGTTGCGCACTAAAGAGAGAGAACATAAAAACGATAACTTAGAGAGAGTTCATACGCTTAATTTACTTTTCTACATGCATCTTGATTACATACTTAAAAAGATTAAAGTTTTACATGTGACTTGGAAAGATAGTACTTTGGGTGGACGAACAACGGAGTCGACAGATGGAACTTTGGGTGGAGGAACAACGGAGTCGACAGATGGAACTTTGGGTGGAGGAACAATGGAGTTGACAAATGGAACTTTGGAACTATAGGTGGAGGCACTACAAAGTCGACAGTTGGAACTTTAGATGGAGGAACTACAGAGTTGACAGGTGATACTTTGGGTGGAGGTACAAAGTTGACAGATGATACTTTTGGTGGAGAAACTACAGAGTTGACAGATGAAATTTTCGATAAAGGAACCACATAG

mRNA sequence

ATGAGAGAGGACGACATGTCAAACATTGTATCAGTTGATCAACTCGACTTGGTTCATAGGCATGGATTAGAGTTGCGCACTAAAGAGAGAGAACATAAAAACGATAACTTAGAGAGATACTTTGGGTGGACGAACAACGGAGTCGACAGATGGAACTTTGGGTGGAGGAACAACGGAGTCGACAGATGGAACTTTGGGTGGAGGAACAATGGAGTTGACAAATGGAACTTTGGAACTATAGGTGGAGGCACTACAAAGTCGACAGTTGGAACTTTAGATGGAGGAACTACAGAGTTGACAGGTGATACTTTGGGTGGAGGTACAAAGTTGACAGATGATACTTTTGGTGGAGAAACTACAGAGTTGACAGATGAAATTTTCGATAAAGGAACCACATAG

Coding sequence (CDS)

ATGAGAGAGGACGACATGTCAAACATTGTATCAGTTGATCAACTCGACTTGGTTCATAGGCATGGATTAGAGTTGCGCACTAAAGAGAGAGAACATAAAAACGATAACTTAGAGAGATACTTTGGGTGGACGAACAACGGAGTCGACAGATGGAACTTTGGGTGGAGGAACAACGGAGTCGACAGATGGAACTTTGGGTGGAGGAACAATGGAGTTGACAAATGGAACTTTGGAACTATAGGTGGAGGCACTACAAAGTCGACAGTTGGAACTTTAGATGGAGGAACTACAGAGTTGACAGGTGATACTTTGGGTGGAGGTACAAAGTTGACAGATGATACTTTTGGTGGAGAAACTACAGAGTTGACAGATGAAATTTTCGATAAAGGAACCACATAG

Protein sequence

MREDDMSNIVSVDQLDLVHRHGLELRTKEREHKNDNLERYFGWTNNGVDRWNFGWRNNGVDRWNFGWRNNGVDKWNFGTIGGGTTKSTVGTLDGGTTELTGDTLGGGTKLTDDTFGGETTELTDEIFDKGTT

Homology

[Close]

BLAST of Csor.00g120860 vs. NCBI nr
Match: KAG6602501.1 (hypothetical protein SDJN03_07734, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 269 bits (687), Expect = 7.56e-91
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREDDMSNIVSVDQLDLVHRHGLELRTKEREHKNDNLERYFGWTNNGVDRWNFGWRNNGV 60
           MREDDMSNIVSVDQLDLVHRHGLELRTKEREHKNDNLERYFGWTNNGVDRWNFGWRNNGV
Sbjct: 1   MREDDMSNIVSVDQLDLVHRHGLELRTKEREHKNDNLERYFGWTNNGVDRWNFGWRNNGV 60

Query: 61  DRWNFGWRNNGVDKWNFGTIGGGTTKSTVGTLDGGTTELTGDTLGGGTKLTDDTFGGETT 120
           DRWNFGWRNNGVDKWNFGTIGGGTTKSTVGTLDGGTTELTGDTLGGGTKLTDDTFGGETT
Sbjct: 61  DRWNFGWRNNGVDKWNFGTIGGGTTKSTVGTLDGGTTELTGDTLGGGTKLTDDTFGGETT 120

Query: 121 ELTDEIFDKGTT 132
           ELTDEIFDKGTT
Sbjct: 121 ELTDEIFDKGTT 132

[Close]

BLAST of Csor.00g120860 vs. NCBI nr
Match: KAG6602504.1 (RNA-binding KH domain-containing protein RCF3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.3 bits (142), Expect = 3.64e-07
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 79  TIGGGTTKSTVGTLDGGTTELTGDTLGGG-TKLTDDTFGGETTELTDEIFDKGTT 132
           T+GGGTT+    TL GGTTELT  TLGGG T+L DDTFGG TTEL D+    GTT
Sbjct: 21  TLGGGTTELPDDTLGGGTTELTDGTLGGGITELPDDTFGGGTTELPDDTLGGGTT 75

The following BLAST results are available for this feature:

BLAST of Csor.00g120860 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g120860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602501.1	7.56e-91	100.00	hypothetical protein SDJN03_07734, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6602504.1	3.64e-07	65.45	RNA-binding KH domain-containing protein RCF3, partial [Cucurbita argyrosperma s...	[more]

BLAST of Csor.00g120860 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g120860 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g120860.m01	Csor.00g120860.m01	mRNA