Csor.00g120710 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g120710
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionprotein IMPAIRED IN BABA-INDUCED STERILITY 1-like isoform X3
LocationCsor_Chr04: 20032117 .. 20035253 (-)
RNA-Seq ExpressionCsor.00g120710
SyntenyCsor.00g120710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCCCAGTCTTCTCTGGGGCATTATGGTCTTTTCGCAAGGCAATGAATATTGATAACCCACTATGAATTTTACTTTAGTGTATATTATTTTGTGACAAATCATATCTTATATGATAAAGAAATAAAAAAAAAAAAAAAAAAAAAAAGTTAAAGACATTGGAATTATGAATTCATCAAGAAAGACGTGGCATATGGTACCAACACATGTAACACATTAATTTTAATAACATATTATATAATGTATGGTCCAACCAAGAAATTATAAATATATATATATATATATGGTAATGCTTAATTTTGAAAATAAGCCAAAAAAATCCAACTTCAATATAGCTGTATTCCTCAACCAACATTTATTTTTGTTTTAAATAAATAATTTATTTGTTAAAAAAAAAAAAAGAAAAATGATAAATATGTTCCCAATTTCTAACCCCACCATTTTCATCACCTTTCTTAAATTATGAAATGGAATTATTTTGTTTGATTTGAAATTTGTCTAACTTTATTTGTGCTAAATGGCGAACAAAAAGTTATCATCCAATTCATTCATTCAGACCATTATTCAACTGGCTTTAAATATATAAACATTTTCATTCATTATTGTTTCATTTTTTTTTTCTTTCTTTTCACGAGAAAAAATATTAGAAAATTATGAACATACAATTAAAAAATGTCGTACGACCTCTGAAATGAGTGTTTTAGCTGTGGGATCGACCTCGCCTAAAATAGGTGTACCGAAGGAAGAAAGAGAAACTTAGAACGTGATTAACACATTGTAAGTGTCTTATTTATCTTCAAAGTTTTGATTAACTTTGTCTTAAAAGATTAAAGCTCTGACACTTAATTTCAAAGCTTAAAAAATCCTTACTTGTCCACCCTATGTCACTTATGATAAAATTATTATTATTATATATATATACATAACTTTTAAATTTAATAATTCAAATAATTGAATATTGGAAAATTAAAAAAGAAAAAAACTTAATTCTAATAGTAAGGCCAGTTCTAAGTTCACTCTAGCTTATCATTATTAAATTAAGCTGAAATTCAATTTCATTTACTTCAATTTAGTTAAAAAATTGAATTTAAAGTCTATTTATAGACCAAACATAATCGGCGAAAATAAAAACAGTACTAAATATTAATAATTATCCAAAATATTAACTATATTAAATTTTATGGTCTTAATTAAAATAAATAAATAAATTGGGATGATCCAAAATAATCAAAACGAGGCAAAAAAGTCAATGGAGCTAAAGAAGCCAACCATTTTTTTTTTCTTTTCCAATTTAACAATTAACACTAACCATTAAGAAGCATAAAAACTTACCTTTGTTATATTGATTAGTTTAAATAATTTCCAAAAACCATTTATTATTTTTTGTTCATAATATAGAGAGAAAAAAAAAAAAAAAAAAAAAACAAAGTCGTACTTCCCTTAAAAACCTTCACCAATTCCAACCCATAATAGAAGAAAATTCCCTCCACAACCCCACCAAACAATAAACTATATTCATTCCTAATACAATTCTCTATAATGATACGATATTGTCCACTTTGAGCATAAGCTTTCGTGACTTTGCTTTGAACTTCTCCAAAAAGTCTCACACTAATGAACATTGTATTCCTTGATTATAAACTCATGATCATTTCCTAAATGAGTCGATGACCATCTCTTTCTATACTAATATTTATTGTTATTTTATATATTTTTTAGTGCACTTTAGTGATATAAAACTCATAATTTACGACTAATTTCTATAATTTAGCTAAATTAAAAAAAAAATAGTTTATGTGAAATTAGTTAATATTTTAAAACAACCAAGGGCTCCTTTTCAATTATTCAACTTCGAGGGGTAGGAGAAATTAGTTAATAATTTATTATCATTACTTTATTAATTTCTTTCCTACCATTAATATTTTAAACACATGCAAATTAATGAAGATAGAGGAAATAAGCGTCTTTCCCGAATTGCATTAATCACTCGATTATATATTTTTCCTAAACAGAACCATTTTAATGGCTATTAATTTTATATTTGTTATAATTATAATTATATATAAGAATCTATCCCTACGCTATTAAAGACACATTATTAAATACTTGTAACCCTAACCGCTTTGCAAGTACATGACTTGTCATTTATAAATGTGATTACAAGTCCTATAAAAGCTAATTGGTTTAATTTGACTACGCCCAATTGTATTTTAACGATAATTTTTATAATATTTGATATTTTGGAAACAAAAGATGAAATTCAATTTTTATTTATTTATTTATAATTTAGCTTTATACATCATTTAGGGGAAAAAAAAAAAGAAAAAAAAAGAGAGAAGCAAAAAGCATAGCCAGCCGGCCCAGCCCAATAATGGTTAAAGGGCTGGGCCCAACTTGAAGTTCAAGGTCCAGGAATCCAGTCAACCAGTTTCAGTCACCGTCGAATCCAAGATCGAGGAAACGACGGGCTTTGCTCACAGCCTCCGGTGAGATTTCGAAAGAAGCTTCTCTCGGACTTTTCATTCCGGCGGGACTTTTGAAACTTTCCGATCGCGTTCTTTCGTCTCTTCTATTTTGCCTTTTACATTGGCTATTCCAGGTAGAGTCTCTCACCTTTTCTGTTGCGTCTCTGGATTGTAGGGATTCAATTGCTCCTTTTCAAATGTCTGTTATCAGGTTGTAAGATTTTATATATATATATTCATTTTACTTCTGATTAGAAGAATGCAGAATTATAATAGATTCAAGCGGGAAAAATTTCCCTCAAATTTATCATGAAATCAGTCAAATCAGTCGAGCCTACCTTATTTTCTACTTTTTCAGGATCTGGGAAGAACTATGGCATGAAATTCTGACTCTCGTATGACCACAGAGCATTACGATTCTCTTTAAAAAAAATAAGAAACCAAATTAGTACCTGGCTGAGGTTGAAATGCATGGGATTTTTTTTCCAAACTTTATTTTCATTTTTTCCCATGTTAATTGGTCGGTAATCATTATAGTTTATGTGCGGTTTTGACAACGCTTATAATCCACTGTGTTTAATATTGGTAATCATGTTAAAATCATAAAATGTAATCCGTTCTAGATGTCTTTTTAATGTGTTTGGTTCTTAATTTTAAAGGTGGCTTGA

mRNA sequence

ATGGCATCCCCAGTCTTCTCTGGGGCATTATGGTCCAGGAATCCAGTCAACCAGTTTCAGTCACCGTCGAATCCAAGATCGAGGAAACGACGGGCTTTGCTCACAGCCTCCGGTGAGATTTCGAAAGAAGCTTCTCTCGGACTTTTCATTCCGGCGGGACTTTTGAAACTTTCCGATCGCGTTCTTTCGTCTCTTCTATTTTGCCTTTTACATTGGCTATTCCAGGTGGCTTGA

Coding sequence (CDS)

ATGGCATCCCCAGTCTTCTCTGGGGCATTATGGTCCAGGAATCCAGTCAACCAGTTTCAGTCACCGTCGAATCCAAGATCGAGGAAACGACGGGCTTTGCTCACAGCCTCCGGTGAGATTTCGAAAGAAGCTTCTCTCGGACTTTTCATTCCGGCGGGACTTTTGAAACTTTCCGATCGCGTTCTTTCGTCTCTTCTATTTTGCCTTTTACATTGGCTATTCCAGGTGGCTTGA

Protein sequence

MASPVFSGALWSRNPVNQFQSPSNPRSRKRRALLTASGEISKEASLGLFIPAGLLKLSDRVLSSLLFCLLHWLFQVA
Homology
[Close]
BLAST of Csor.00g120710 vs. NCBI nr
Match: KAG6602516.1 (hypothetical protein SDJN03_07749, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152 bits (384), Expect = 2.29e-46
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MASPVFSGALWSRNPVNQFQSPSNPRSRKRRALLTASGEISKEASLGLFIPAGLLKLSDR 60
          MASPVFSGALWSRNPVNQFQSPSNPRSRKRRALLTASGEISKEASLGLFIPAGLLKLSDR
Sbjct: 1  MASPVFSGALWSRNPVNQFQSPSNPRSRKRRALLTASGEISKEASLGLFIPAGLLKLSDR 60

Query: 61 VLSSLLFCLLHWLFQVA 77
          VLSSLLFCLLHWLFQVA
Sbjct: 61 VLSSLLFCLLHWLFQVA 77

[Close]
BLAST of Csor.00g120710 vs. NCBI nr
Match: XP_022990717.1 (protein IMPAIRED IN BABA-INDUCED STERILITY 1-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 80.5 bits (197), Expect = 1.84e-15
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 15  PVNQFQSPSNPRSRKRR---ALLTASGEISKEASLGLFIPAGLLKLSDRVLSSLLFCLLH 74
           P N        R ++RR   ALLTASGEISKEASL LFIPAGL KL DRVLSSL FCLLH
Sbjct: 589 PANSVTQDYEMRKQQRRVHGALLTASGEISKEASLRLFIPAGLSKLPDRVLSSLPFCLLH 648

Query: 75  WLFQVA 77
           WLF+VA
Sbjct: 649 WLFKVA 654

[Close]
BLAST of Csor.00g120710 vs. NCBI nr
Match: XP_022990715.1 (protein IMPAIRED IN BABA-INDUCED STERILITY 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 77.4 bits (189), Expect = 2.23e-14
Identity = 44/64 (68.75%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 15  PVNQFQSPSNPRSRKRR---ALLTASGEISKEASLGLFIPAGLLKLSDRVLSSLLFCLLH 74
           P N        R ++RR   ALLTASGEISKEASL LFIPAGL KL DRVLSSL FCLLH
Sbjct: 589 PANSVTQDYEMRKQQRRVHGALLTASGEISKEASLRLFIPAGLSKLPDRVLSSLPFCLLH 648

[Close]
BLAST of Csor.00g120710 vs. ExPASy TrEMBL
Match: A0A6J1JJL4 (protein IMPAIRED IN BABA-INDUCED STERILITY 1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111487521 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.90e-16
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 15  PVNQFQSPSNPRSRKRR---ALLTASGEISKEASLGLFIPAGLLKLSDRVLSSLLFCLLH 74
           P N        R ++RR   ALLTASGEISKEASL LFIPAGL KL DRVLSSL FCLLH
Sbjct: 589 PANSVTQDYEMRKQQRRVHGALLTASGEISKEASLRLFIPAGLSKLPDRVLSSLPFCLLH 648

Query: 75  WLFQVA 77
           WLF+VA
Sbjct: 649 WLFKVA 654

[Close]
BLAST of Csor.00g120710 vs. ExPASy TrEMBL
Match: A0A6J1JQV4 (protein IMPAIRED IN BABA-INDUCED STERILITY 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487521 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.08e-14
Identity = 44/64 (68.75%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 15  PVNQFQSPSNPRSRKRR---ALLTASGEISKEASLGLFIPAGLLKLSDRVLSSLLFCLLH 74
           P N        R ++RR   ALLTASGEISKEASL LFIPAGL KL DRVLSSL FCLLH
Sbjct: 589 PANSVTQDYEMRKQQRRVHGALLTASGEISKEASLRLFIPAGLSKLPDRVLSSLPFCLLH 648

The following BLAST results are available for this feature:
BLAST of Csor.00g120710 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g120710 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6602516.12.29e-46100.00hypothetical protein SDJN03_07749, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022990717.11.84e-1569.70protein IMPAIRED IN BABA-INDUCED STERILITY 1-like isoform X3 [Cucurbita maxima][more]
XP_022990715.12.23e-1468.75protein IMPAIRED IN BABA-INDUCED STERILITY 1-like isoform X2 [Cucurbita maxima][more]
BLAST of Csor.00g120710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JJL48.90e-1669.70protein IMPAIRED IN BABA-INDUCED STERILITY 1-like isoform X3 OS=Cucurbita maxima... [more]
A0A6J1JQV41.08e-1468.75protein IMPAIRED IN BABA-INDUCED STERILITY 1-like isoform X2 OS=Cucurbita maxima... [more]
BLAST of Csor.00g120710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g120710.m01Csor.00g120710.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
molecular_function GO:0016301 kinase activity
molecular_function GO:0000166 nucleotide binding