Csor.00g120100 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g120100
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	COX assembly mitochondrial protein
Location	Csor_Chr04: 20402100 .. 20404175 (-)
RNA-Seq Expression	Csor.00g120100
Synteny	Csor.00g120100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCTAATTCCTGTGCTCCTATGGCTTTCTAAGATGGGTTACTTGCAGGATGCTCGAGAGAATCATGTGAAGAAGAAAGCAGAGGAAGGTATTTAATCCAATCTTGCTTTCGTCCTTTACCTGTTTAATCTGCTTTTGATTGCTGAGGAACATGATGCATCTGTTCAATTTTTGAGTCTTGTATCTTGCAACTGCTGTTGAAACTTCTGGTGCGTTTCCAGCTTTGCGTAGCAAAATGAAGCAGAAGGCGTTGAGGGAGTGCGATCATTACGCCTCGAGGTATGCCGAATGCGTCTACGCCAAAGCGTTATCTGTTGTTTTCAAGTGTCGCAATCAAGCTTAAGAACTGAACGATTGCCTTCGCCAATAGTGAGTCTCTGATTATTTTGCTTAGCTTTTGGGTAGTTGTATTGAATTTCATCTGCATTTTGTTCGCATTGTTTGTTCGGCTTCTCTTCTGTTCATAACAATGTGCATTATCATCGTTCCTCACGCACCAATTATCATGTTTATCGAATTGTTACGATATTGTTGTCCTGTGAAAACATCTTCCTAGTAGACATTTAAAACCGTGAGGTTGATGACAATATGTAACGGGCCAAAACAGACAGTATTTGCTAGCAGTAGGCTTGGGCTGTTATAAATGGTATCAAAGTTAGTCACTGGACGGTGTGCTAGCGAGGATGTTGGCGCCCAAGAGGGGTGGATTGTGAGATCCCATGTTGGTTGGAGAGGGGAACAAAACATTTCTTATAAGGGGTGTGGAAACATCTCCCGTTTTAAAACCGTGAGGTTGATGACAATATGTAACGGACCAAAACAGACAATATCTGTTAGCGGTGGGCTTGGGCGGTTACAAATGGTATCAGAGTTAGTCACCAGACGGTGTGCTAGCAAGGATGCTGGCCACCAATGGGGTGGGTTGTGAGATCTCACATTGGTTGGAGAGAGGAACAAAGCATTTCTTATAAGGGTGTGGAAACATCATCTCCCTACTAGACGCGTTTTAAAACCGTGAGGTTGATGGCAATATATAACGGGCCAAAGTAGACAATATCTACTAGCAGTAGGCTTGGGCTGTTACAATTTGCCTTAGAATGAATTTTGAGCAGGGGGACAAAAATGGCCGTGAGCGTATTATGGCATGGGCGACGCCCATGAAACAAATATCTGATAGTGCCTCAACAGGAGGGAAAGGTGATGCTATACCACAAGATGGATGTTCAAGCAAGCCTTTATAAAGATGTAAGAGCTCATTGGTTGTTTATTGATACATGCCTACAGCCAAATGGTGGCACTTATGGGTACCCCAAGGTGAGGCAGTCTTATGCCAAGACTCATTTTGAGTGTAGTGAGTTGTAGAGTGTGTGGGCAACGGTGCATCCAGGATGCAATGGCCTTGTCTGCGTAGAGGCAAGATGAGCACCCTAAGGCTAAGCAGGCTATTGTTGGATCGAGAGTCTTTTGGGAGGATAAGCTTTAGACTAAGCCAACTATGGGCTAGAAGGAGCTCATTTTGAGTAGCTTGAATGAACGCAACAAAGTGAAGTTGGTATCAAAAGGAGTCTGGTGATACAACCATGGGCAGACCTAGCCAAGGACTCATGGGAAGTGGATTCTTAATCCTAATGGTCTCTTCTGTAGCGTTTTTTTATAGCTATAATAGAGTATGATACTATAGTTTATATAAGTTTCATTTATTCATGTATTGTTTGTTTACTATTAGTTTTTGGGTTAGAATATGCACATCCTTTGACTCGTATTTGACCTCTCCTAGCAAGATGAGAACCTTTTTATCTATGGTTATGGTACACATTCCTTTCAAAAACGAAAACATTATGCTATGGATGCACAAATAAAGGTAGAGGTCCTTCTACGATTCTTAACGAACGATTCCAACCAAGAGCTAGTTAAAGGTCTCTTGAATTTTCTTTATTTTGATTCTTGTAATTGCTCCTGGATCAGTGGTTAGATTCATATCATGTTTTCTTTTCATTTTCCAGCACCAATGATGACATGTTGGAAGAGATGAAGCAGCAGGAGTATGCACTTCAACAAAATGGCAAGCCGTGA

mRNA sequence

ATGCTGCTAATTCCTGTGCTCCTATGGCTTTCTAAGATGGGTTACTTGCAGGATGCTCGAGAGAATCATGTGAAGAAGAAAGCAGAGGAAGCTTTGCGTAGCAAAATGAAGCAGAAGGCGTTGAGGGAGTGCGATCATTACGCCTCGAGCACCAATGATGACATGTTGGAAGAGATGAAGCAGCAGGAGTATGCACTTCAACAAAATGGCAAGCCGTGA

Coding sequence (CDS)

ATGCTGCTAATTCCTGTGCTCCTATGGCTTTCTAAGATGGGTTACTTGCAGGATGCTCGAGAGAATCATGTGAAGAAGAAAGCAGAGGAAGCTTTGCGTAGCAAAATGAAGCAGAAGGCGTTGAGGGAGTGCGATCATTACGCCTCGAGCACCAATGATGACATGTTGGAAGAGATGAAGCAGCAGGAGTATGCACTTCAACAAAATGGCAAGCCGTGA

Protein sequence

MLLIPVLLWLSKMGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASSTNDDMLEEMKQQEYALQQNGKP

Homology

[Close]

BLAST of Csor.00g120100 vs. NCBI nr
Match: KAG6602577.1 (hypothetical protein SDJN03_07810, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139 bits (350), Expect = 2.49e-41
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MLLIPVLLWLSKMGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASSTNDDMLEEMK 60
          MLLIPVLLWLSKMGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASSTNDDMLEEMK
Sbjct: 1  MLLIPVLLWLSKMGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASSTNDDMLEEMK 60

Query: 61 QQEYALQQNGKP 72
          QQEYALQQNGKP
Sbjct: 61 QQEYALQQNGKP 72

[Close]

BLAST of Csor.00g120100 vs. NCBI nr
Match: XP_004141503.1 (uncharacterized protein DDB_G0275933 [Cucumis sativus] >KGN52577.1 hypothetical protein Csa_008027 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 9.92e-17
Identity = 48/90 (53.33%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASS---------------------- 72
          MGY+Q+ARENHVKKK EEALRSKMKQKAL+ECD YAS                       
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDRYASKYAECAYGRTLSVVFKCRNQAKE 60

[Close]

BLAST of Csor.00g120100 vs. NCBI nr
Match: XP_019188997.1 (PREDICTED: uncharacterized protein DDB_G0275933 [Ipomoea nil])

HSP 1 Score: 74.7 bits (182), Expect = 1.91e-15
Identity = 47/89 (52.81%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASS---------------------- 71
          MGY+Q+ARENHVKKK EEALRSKMKQKAL+ECD YA+                       
Sbjct: 1  MGYVQEARENHVKKKVEEALRSKMKQKALKECDEYAAKYAECATGKTISVVWQCRKQAKE 60

[Close]

BLAST of Csor.00g120100 vs. NCBI nr
Match: XP_031100015.1 (uncharacterized protein DDB_G0275933-like [Ipomoea triloba] >XP_031100024.1 uncharacterized protein DDB_G0275933-like [Ipomoea triloba] >XP_031100032.1 uncharacterized protein DDB_G0275933-like [Ipomoea triloba])

HSP 1 Score: 73.2 bits (178), Expect = 7.36e-15
Identity = 46/89 (51.69%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASS---------------------- 71
          MGY+Q+ARENHVKKK EEALRSKMKQKAL+ECD YA+                       
Sbjct: 1  MGYVQEARENHVKKKVEEALRSKMKQKALKECDEYAAKYAECATGKTISVVWQCRKQAKE 60

[Close]

BLAST of Csor.00g120100 vs. NCBI nr
Match: XP_030952655.1 (uncharacterized protein DDB_G0275933 [Quercus lobata])

HSP 1 Score: 72.8 bits (177), Expect = 1.04e-14
Identity = 46/89 (51.69%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASS---------------------- 71
          MGY+Q+ARENHVKKK EEALRSKMKQKAL+ECD Y S                       
Sbjct: 1  MGYVQEARENHVKKKVEEALRSKMKQKALKECDQYTSKYAQCALGRTLSVVWACRELAKE 60

[Close]

BLAST of Csor.00g120100 vs. ExPASy TrEMBL
Match: A0A0A0KVX6 (COX assembly mitochondrial protein OS=Cucumis sativus OX=3659 GN=Csa_5G644540 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.80e-17
Identity = 48/90 (53.33%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASS---------------------- 72
          MGY+Q+ARENHVKKK EEALRSKMKQKAL+ECD YAS                       
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDRYASKYAECAYGRTLSVVFKCRNQAKE 60

[Close]

BLAST of Csor.00g120100 vs. ExPASy TrEMBL
Match: A0A7N2KWK4 (COX assembly mitochondrial protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.05e-15
Identity = 46/89 (51.69%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASS---------------------- 71
          MGY+Q+ARENHVKKK EEALRSKMKQKAL+ECD Y S                       
Sbjct: 1  MGYVQEARENHVKKKVEEALRSKMKQKALKECDQYTSKYAQCALGRTLSVVWACRELAKE 60

[Close]

BLAST of Csor.00g120100 vs. ExPASy TrEMBL
Match: A0A6J1BW91 (COX assembly mitochondrial protein OS=Momordica charantia OX=3673 GN=LOC111006094 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.06e-13
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYAS 49
          MGY+Q+ARENHVKKK EEALRSKMKQKAL+ECDHYAS
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYAS 37

[Close]

BLAST of Csor.00g120100 vs. ExPASy TrEMBL
Match: A0A1S3CA82 (COX assembly mitochondrial protein OS=Cucumis melo OX=3656 GN=LOC103498594 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.06e-13
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYAS 49
          MGY+Q+ARENHVKKK EEALRSKMKQKAL+ECDHYAS
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYAS 37

[Close]

BLAST of Csor.00g120100 vs. ExPASy TrEMBL
Match: A0A6J5UEW6 (COX assembly mitochondrial protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS22961 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.67e-13
Identity = 45/89 (50.56%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASS---------------------- 71
          MGY+Q+ARENHVKKK EEALRSKMKQKAL+EC   AS                       
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALQECKDLASKYAECSYGRTISVVWQCRQQAKE 60

[Close]

BLAST of Csor.00g120100 vs. TAIR 10
Match: AT5G16060.1 (Cytochrome c oxidase biogenesis protein Cmc1-like )

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 15 YLQDARENHVKKKAEEALRSKMKQKALRECDHYAS 50
          Y++ ARENHVKKK EEALRSKMK KAL ECD Y S
Sbjct: 4  YVEQARENHVKKKVEEALRSKMKAKALMECDQYVS 38

The following BLAST results are available for this feature:

BLAST of Csor.00g120100 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g120100 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602577.1	2.49e-41	100.00	hypothetical protein SDJN03_07810, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004141503.1	9.92e-17	53.33	uncharacterized protein DDB_G0275933 [Cucumis sativus] >KGN52577.1 hypothetical ...	[more]
XP_019188997.1	1.91e-15	52.81	PREDICTED: uncharacterized protein DDB_G0275933 [Ipomoea nil]	[more]
XP_031100015.1	7.36e-15	51.69	uncharacterized protein DDB_G0275933-like [Ipomoea triloba] >XP_031100024.1 unch...	[more]
XP_030952655.1	1.04e-14	51.69	uncharacterized protein DDB_G0275933 [Quercus lobata]	[more]

BLAST of Csor.00g120100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVX6	4.80e-17	53.33	COX assembly mitochondrial protein OS=Cucumis sativus OX=3659 GN=Csa_5G644540 PE...	[more]
A0A7N2KWK4	5.05e-15	51.69	COX assembly mitochondrial protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A6J1BW91	1.06e-13	89.19	COX assembly mitochondrial protein OS=Momordica charantia OX=3673 GN=LOC11100609...	[more]
A0A1S3CA82	1.06e-13	89.19	COX assembly mitochondrial protein OS=Cucumis melo OX=3656 GN=LOC103498594 PE=3 ...	[more]
A0A6J5UEW6	1.67e-13	50.56	COX assembly mitochondrial protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS2...	[more]

BLAST of Csor.00g120100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16060.1	1.2e-08	77.14	Cytochrome c oxidase biogenesis protein Cmc1-like	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g120100.m01	Csor.00g120100.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion