Csor.00g119920 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g119920
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionHIG1 domain-containing protein
LocationCsor_Chr04: 20467004 .. 20467625 (+)
RNA-Seq ExpressionCsor.00g119920
SyntenyCsor.00g119920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGGGAATTTGGCAGAGGAAACCGGCAACGCAGAGCCTCTGGTTTGGAAGAAAAACAGAGGATTCCGTGTGAAACCAAGGGGCTTGGGGCCACATGTTCAGCTACACCACTCATTATTTATAAAACGCTCCCCTCCTCATTGTAATCTGCGCTTAGTTCAGTGATAAACACAGTAAAAAACACCAACAATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGTTTGTCTCCTCCTTTCAAGCATCCTCTGTTTTCCTTCTATGTTCTTTCCCATAACATTATATATGAATTTTTTCGTGTAGGAGCTCTGTGGGCGTCTGGGATTGGAGCCTCGCTGGTGTACACAAAATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATTCATGCCAGGTAAACACACGATATCATTCAATAGAGACCATGATATCCATTTTTTTCGTTAAAACTGAAATGGGTTATCTTATTTTATAGGATGCATGCTCAGGCTTTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAAGGCGTCGCCGATCGAACCAAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAG

mRNA sequence

ATGATTGGGGAATTTGGCAGAGGAAACCGGCAACGCAGAGCCTCTGGAGCTCTGTGGGCGTCTGGGATTGGAGCCTCGCTGGTGTACACAAAATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATTCATGCCAGGATGCATGCTCAGGCTTTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAAGGCGTCGCCGATCGAACCAAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAG

Coding sequence (CDS)

ATGATTGGGGAATTTGGCAGAGGAAACCGGCAACGCAGAGCCTCTGGAGCTCTGTGGGCGTCTGGGATTGGAGCCTCGCTGGTGTACACAAAATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATTCATGCCAGGATGCATGCTCAGGCTTTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAAGGCGTCGCCGATCGAACCAAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAG

Protein sequence

MIGEFGRGNRQRRASGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKGVADRTKVSASAVPGK
Homology
BLAST of Csor.00g119920 vs. NCBI nr
Match: KAG6602595.1 (hypothetical protein SDJN03_07828, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171 bits (433), Expect = 1.56e-53
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0

Query: 1  MIGEFGRGNRQRRASGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGA 60
          MIGEFGRGNRQRRASGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGA
Sbjct: 1  MIGEFGRGNRQRRASGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGA 60

Query: 61 AVYHYYEKEKKGVADRTKVSASAVPGK 87
          AVYHYYEKEKKGVADRTKVSASAVPGK
Sbjct: 61 AVYHYYEKEKKGVADRTKVSASAVPGK 87

BLAST of Csor.00g119920 vs. NCBI nr
Match: KAG7033273.1 (hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141 bits (356), Expect = 8.98e-42
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 16 GALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKGVAD 75
          GALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKGVAD
Sbjct: 17 GALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKGVAD 76

Query: 76 RTKVSASAVPGK 87
          RTKVSASAVPGK
Sbjct: 77 RTKVSASAVPGK 88

BLAST of Csor.00g119920 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107 bits (268), Expect = 2.34e-28
Identity = 56/71 (78.87%), Postives = 58/71 (81.69%), Query Frame = 0

Query: 16 GALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKGVAD 75
          GALWASGIGASL YT+S TPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYE +  GV  
Sbjct: 17 GALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKSAGVRS 76

Query: 76 RTKVSASAVPG 86
              SA  VPG
Sbjct: 77 EAPTSA-VVPG 86

BLAST of Csor.00g119920 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus])

HSP 1 Score: 101 bits (252), Expect = 6.05e-26
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 0

Query: 16 GALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKE 69
          GALWASGIGASL YT+SRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYY+ +
Sbjct: 17 GALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYDNK 70

BLAST of Csor.00g119920 vs. NCBI nr
Match: VVA18489.1 (PREDICTED: unknown [Prunus dulcis])

HSP 1 Score: 101 bits (251), Expect = 6.87e-26
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 13 RASGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKG 72
          +A GA+W SGIGASL Y+++RTPLKPSLRLIHARMHAQALTLAVLSGAA YHYYEK +  
Sbjct: 14 KAIGAIWVSGIGASLAYSRARTPLKPSLRLIHARMHAQALTLAVLSGAAAYHYYEKHE-- 73

Query: 73 VADRTK 78
           ADR K
Sbjct: 74 -ADRQK 76

BLAST of Csor.00g119920 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 2.93e-26
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 0

Query: 16 GALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKE 69
          GALWASGIGASL YT+SRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYY+ +
Sbjct: 17 GALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYDNK 70

BLAST of Csor.00g119920 vs. ExPASy TrEMBL
Match: A0A5E4EUD8 (HIG1 domain-containing protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B003756 PE=4 SV=1)

HSP 1 Score: 101 bits (251), Expect = 3.33e-26
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 13 RASGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKG 72
          +A GA+W SGIGASL Y+++RTPLKPSLRLIHARMHAQALTLAVLSGAA YHYYEK +  
Sbjct: 14 KAIGAIWVSGIGASLAYSRARTPLKPSLRLIHARMHAQALTLAVLSGAAAYHYYEKHE-- 73

Query: 73 VADRTK 78
           ADR K
Sbjct: 74 -ADRQK 76

BLAST of Csor.00g119920 vs. ExPASy TrEMBL
Match: A0A067JNW4 (HIG1 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_03356 PE=4 SV=1)

HSP 1 Score: 101 bits (251), Expect = 3.94e-26
Identity = 46/59 (77.97%), Postives = 55/59 (93.22%), Query Frame = 0

Query: 16 GALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKGVA 74
          GALWA+ +G SL YT++RTPLKPSLRLIHARMHAQA+TLAVLSGAA+YHYYEK+++ VA
Sbjct: 17 GALWATAVGGSLAYTRTRTPLKPSLRLIHARMHAQAITLAVLSGAAIYHYYEKQEENVA 75

BLAST of Csor.00g119920 vs. ExPASy TrEMBL
Match: A0A5N6QEA8 (HIG1 domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_001235 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 7.46e-26
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0

Query: 16 GALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEK 68
          GALWASGIGASL YT++R+PLKPSLRLIHARMHAQALTLAVLSGAA YHYYEK
Sbjct: 5  GALWASGIGASLAYTRTRSPLKPSLRLIHARMHAQALTLAVLSGAAAYHYYEK 57

BLAST of Csor.00g119920 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 8.39e-26
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 0

Query: 16 GALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKE 69
          GALWASG+GASL YT+SRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYY+ +
Sbjct: 17 GALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYDNK 70

BLAST of Csor.00g119920 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein )

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-12
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 13 RASGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKG 72
          R  G LW SGI  S+ Y  S+  +K S+R+IHAR+HAQALTLA L+GAA   YY+  K G
Sbjct: 21 RTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAAVEYYD-HKSG 80

Query: 73 VADR 77
            DR
Sbjct: 81 ATDR 83

BLAST of Csor.00g119920 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein )

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-11
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 13 RASGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYE 68
          R  G LW SGI  S+ Y  S+  +K S+++IHAR+HAQALTLA L+GAAV  YY+
Sbjct: 21 RTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGAAVVEYYD 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6602595.11.56e-53100.00hypothetical protein SDJN03_07828, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7033273.18.98e-42100.00hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6578469.12.34e-2878.87hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_004138401.16.05e-2690.74uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical ... [more]
VVA18489.16.87e-2677.27PREDICTED: unknown [Prunus dulcis][more]
Match NameE-valueIdentityDescription
A0A0A0K7T42.93e-2690.74HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 S... [more]
A0A5E4EUD83.33e-2677.27HIG1 domain-containing protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B003756 PE=4 ... [more]
A0A067JNW43.94e-2677.97HIG1 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_03356 PE=4 S... [more]
A0A5N6QEA87.46e-2690.57HIG1 domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_001235 PE... [more]
A0A5A7UEZ18.39e-2688.89Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=11... [more]
Match NameE-valueIdentityDescription
AT5G27760.11.7e-1254.69Hypoxia-responsive family protein [more]
AT3G05550.13.2e-1156.36Hypoxia-responsive family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007667Hypoxia induced protein, domainPFAMPF04588HIG_1_Ncoord: 16..58
e-value: 1.7E-6
score: 28.1
IPR007667Hypoxia induced protein, domainPROSITEPS51503HIG1coord: 1..75
score: 14.549097
NoneNo IPR availableGENE3D6.10.140.1320coord: 15..71
e-value: 1.4E-6
score: 30.0
NoneNo IPR availablePANTHERPTHR28018:SF3RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIALcoord: 16..75
IPR040153Respiratory supercomplex factor 2, mitochondrialPANTHERPTHR28018RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIALcoord: 16..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g119920.m01Csor.00g119920.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0033617 mitochondrial cytochrome c oxidase assembly
cellular_component GO:0031305 integral component of mitochondrial inner membrane
cellular_component GO:0005746 mitochondrial respirasome