Csor.00g119920 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTGGGGAATTTGGCAGAGGAAACCGGCAACGCAGAGCCTCTGGTTTGGAAGAAAAACAGAGGATTCCGTGTGAAACCAAGGGGCTTGGGGCCACATGTTCAGCTACACCACTCATTATTTATAAAACGCTCCCCTCCTCATTGTAATCTGCGCTTAGTTCAGTGATAAACACAGTAAAAAACACCAACAATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGTTTGTCTCCTCCTTTCAAGCATCCTCTGTTTTCCTTCTATGTTCTTTCCCATAACATTATATATGAATTTTTTCGTGTAGGAGCTCTGTGGGCGTCTGGGATTGGAGCCTCGCTGGTGTACACAAAATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATTCATGCCAGGTAAACACACGATATCATTCAATAGAGACCATGATATCCATTTTTTTCGTTAAAACTGAAATGGGTTATCTTATTTTATAGGATGCATGCTCAGGCTTTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAAGGCGTCGCCGATCGAACCAAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAG ATGATTGGGGAATTTGGCAGAGGAAACCGGCAACGCAGAGCCTCTGGAGCTCTGTGGGCGTCTGGGATTGGAGCCTCGCTGGTGTACACAAAATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATTCATGCCAGGATGCATGCTCAGGCTTTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAAGGCGTCGCCGATCGAACCAAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAG ATGATTGGGGAATTTGGCAGAGGAAACCGGCAACGCAGAGCCTCTGGAGCTCTGTGGGCGTCTGGGATTGGAGCCTCGCTGGTGTACACAAAATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATTCATGCCAGGATGCATGCTCAGGCTTTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAAGGCGTCGCCGATCGAACCAAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAG MIGEFGRGNRQRRASGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKGVADRTKVSASAVPGK Homology
BLAST of Csor.00g119920 vs. NCBI nr
Match: KAG6602595.1 (hypothetical protein SDJN03_07828, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 171 bits (433), Expect = 1.56e-53 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
BLAST of Csor.00g119920 vs. NCBI nr
Match: KAG7033273.1 (hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 141 bits (356), Expect = 8.98e-42 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0
BLAST of Csor.00g119920 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 107 bits (268), Expect = 2.34e-28 Identity = 56/71 (78.87%), Postives = 58/71 (81.69%), Query Frame = 0
BLAST of Csor.00g119920 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus]) HSP 1 Score: 101 bits (252), Expect = 6.05e-26 Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 0
BLAST of Csor.00g119920 vs. NCBI nr
Match: VVA18489.1 (PREDICTED: unknown [Prunus dulcis]) HSP 1 Score: 101 bits (251), Expect = 6.87e-26 Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 0
BLAST of Csor.00g119920 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1) HSP 1 Score: 101 bits (252), Expect = 2.93e-26 Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 0
BLAST of Csor.00g119920 vs. ExPASy TrEMBL
Match: A0A5E4EUD8 (HIG1 domain-containing protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B003756 PE=4 SV=1) HSP 1 Score: 101 bits (251), Expect = 3.33e-26 Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 0
BLAST of Csor.00g119920 vs. ExPASy TrEMBL
Match: A0A067JNW4 (HIG1 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_03356 PE=4 SV=1) HSP 1 Score: 101 bits (251), Expect = 3.94e-26 Identity = 46/59 (77.97%), Postives = 55/59 (93.22%), Query Frame = 0
BLAST of Csor.00g119920 vs. ExPASy TrEMBL
Match: A0A5N6QEA8 (HIG1 domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_001235 PE=4 SV=1) HSP 1 Score: 100 bits (248), Expect = 7.46e-26 Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0
BLAST of Csor.00g119920 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1) HSP 1 Score: 100 bits (249), Expect = 8.39e-26 Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 0
BLAST of Csor.00g119920 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein ) HSP 1 Score: 69.3 bits (168), Expect = 1.7e-12 Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 0
BLAST of Csor.00g119920 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein ) HSP 1 Score: 65.1 bits (157), Expect = 3.2e-11 Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|