Csor.00g119200 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGCTGGTGAAGCGGCGGCGGAGGAGGTGTGGGTGACGGTAGAATGCGCGAGGGAGGCGTGCATTGAGGGAGAGGAGGAGGAGAGGATGAAGAAGCTAGAAGAGGACACGTGTCCAGGGTTTGTATCGGACGGTGTGGATAGAGTAGAGTGGGTAAACGAGGCGTTGAAAAGAATGGTGAGGCAAAGGCGGAGAAGCAGTGAGGCAGGTGAGGAAATAGAGGTAAGGCTGAGAACAAGGCCAAGATTGGGTTACTTGCCAAATAAAGCATTCACGTGCCAAATAAAGCATTCACGTGCCAAATAAAGCTGCACTTCAAAGCTGGTACTACGGCCATGGTGGTGCCTTGTGATGCGTGGAGAACGGCCCGCCGAGGGATCGCATGGAAACTAGACCTCAACTCCGCCCTCCCTTTAGCTCCTCCACTTCAACAAGACTCCCATAAATGCATCCCTTTATGA ATGGATGCTGGTGAAGCGGCGGCGGAGGAGGTGTGGGTGACGGTAGAATGCGCGAGGGAGGCGTGCATTGAGGGAGAGGAGGAGGAGAGGATGAAGAAGCTAGAAGAGGACACGTGTCCAGGGTTTGTATCGGACGGTGTGGATAGAGTAGAGTGGGTAAACGAGGCGTTGAAAAGAATGGTGAGGCAAAGGCGGAGAAGCAGTGAGGCAGGTGAGGAAATAGAGCTGCACTTCAAAGCTGGTACTACGGCCATGGTGGTGCCTTGTGATGCGTGGAGAACGGCCCGCCGAGGGATCGCATGGAAACTAGACCTCAACTCCGCCCTCCCTTTAGCTCCTCCACTTCAACAAGACTCCCATAAATGCATCCCTTTATGA ATGGATGCTGGTGAAGCGGCGGCGGAGGAGGTGTGGGTGACGGTAGAATGCGCGAGGGAGGCGTGCATTGAGGGAGAGGAGGAGGAGAGGATGAAGAAGCTAGAAGAGGACACGTGTCCAGGGTTTGTATCGGACGGTGTGGATAGAGTAGAGTGGGTAAACGAGGCGTTGAAAAGAATGGTGAGGCAAAGGCGGAGAAGCAGTGAGGCAGGTGAGGAAATAGAGCTGCACTTCAAAGCTGGTACTACGGCCATGGTGGTGCCTTGTGATGCGTGGAGAACGGCCCGCCGAGGGATCGCATGGAAACTAGACCTCAACTCCGCCCTCCCTTTAGCTCCTCCACTTCAACAAGACTCCCATAAATGCATCCCTTTATGA MDAGEAAAEEVWVTVECAREACIEGEEEERMKKLEEDTCPGFVSDGVDRVEWVNEALKRMVRQRRRSSEAGEEIELHFKAGTTAMVVPCDAWRTARRGIAWKLDLNSALPLAPPLQQDSHKCIPL Homology
BLAST of Csor.00g119200 vs. NCBI nr
Match: KAG6602666.1 (hypothetical protein SDJN03_07899, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 253 bits (647), Expect = 5.66e-85 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of Csor.00g119200 vs. NCBI nr
Match: KAG7033351.1 (hypothetical protein SDJN02_07406, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 223 bits (567), Expect = 1.64e-72 Identity = 117/143 (81.82%), Postives = 119/143 (83.22%), Query Frame = 0
BLAST of Csor.00g119200 vs. NCBI nr
Match: XP_022989872.1 (uncharacterized protein LOC111486935 [Cucurbita maxima] >XP_022989873.1 uncharacterized protein LOC111486935 [Cucurbita maxima]) HSP 1 Score: 194 bits (493), Expect = 7.84e-60 Identity = 103/134 (76.87%), Postives = 106/134 (79.10%), Query Frame = 0
BLAST of Csor.00g119200 vs. NCBI nr
Match: XP_023543904.1 (uncharacterized protein LOC111803631 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 139 bits (351), Expect = 1.18e-38 Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0
BLAST of Csor.00g119200 vs. NCBI nr
Match: XP_022955504.1 (uncharacterized protein LOC111457498 isoform X3 [Cucurbita moschata]) HSP 1 Score: 136 bits (342), Expect = 2.54e-37 Identity = 77/100 (77.00%), Postives = 77/100 (77.00%), Query Frame = 0
BLAST of Csor.00g119200 vs. ExPASy TrEMBL
Match: A0A6J1JH06 (uncharacterized protein LOC111486935 OS=Cucurbita maxima OX=3661 GN=LOC111486935 PE=4 SV=1) HSP 1 Score: 194 bits (493), Expect = 3.80e-60 Identity = 103/134 (76.87%), Postives = 106/134 (79.10%), Query Frame = 0
BLAST of Csor.00g119200 vs. ExPASy TrEMBL
Match: A0A6J1GWG6 (uncharacterized protein LOC111457498 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111457498 PE=4 SV=1) HSP 1 Score: 136 bits (342), Expect = 1.23e-37 Identity = 77/100 (77.00%), Postives = 77/100 (77.00%), Query Frame = 0
BLAST of Csor.00g119200 vs. ExPASy TrEMBL
Match: A0A6J1GTT8 (uncharacterized protein LOC111457498 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457498 PE=4 SV=1) HSP 1 Score: 136 bits (342), Expect = 2.11e-37 Identity = 77/100 (77.00%), Postives = 77/100 (77.00%), Query Frame = 0
BLAST of Csor.00g119200 vs. ExPASy TrEMBL
Match: A0A6J1GV91 (uncharacterized protein LOC111457498 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457498 PE=4 SV=1) HSP 1 Score: 136 bits (342), Expect = 2.60e-37 Identity = 77/100 (77.00%), Postives = 77/100 (77.00%), Query Frame = 0
BLAST of Csor.00g119200 vs. ExPASy TrEMBL
Match: A0A6J1JZR6 (uncharacterized protein LOC111488911 OS=Cucurbita maxima OX=3661 GN=LOC111488911 PE=4 SV=1) HSP 1 Score: 119 bits (298), Expect = 3.44e-30 Identity = 72/153 (47.06%), Postives = 92/153 (60.13%), Query Frame = 0
BLAST of Csor.00g119200 vs. TAIR 10
Match: AT5G40790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12 Identity = 49/140 (35.00%), Postives = 62/140 (44.29%), Query Frame = 0
BLAST of Csor.00g119200 vs. TAIR 10
Match: AT5G63350.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48510.1); Has 103 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 68.9 bits (167), Expect = 3.2e-12 Identity = 50/138 (36.23%), Postives = 62/138 (44.93%), Query Frame = 0
BLAST of Csor.00g119200 vs. TAIR 10
Match: AT5G50360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 67.8 bits (164), Expect = 7.1e-12 Identity = 43/127 (33.86%), Postives = 64/127 (50.39%), Query Frame = 0
BLAST of Csor.00g119200 vs. TAIR 10
Match: AT3G27250.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40800.1); Has 104 Blast hits to 104 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 66.6 bits (161), Expect = 1.6e-11 Identity = 50/144 (34.72%), Postives = 62/144 (43.06%), Query Frame = 0
BLAST of Csor.00g119200 vs. TAIR 10
Match: AT5G40800.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 63.5 bits (153), Expect = 1.3e-10 Identity = 42/135 (31.11%), Postives = 59/135 (43.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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