Csor.00g118470 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g118470
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr04: 21156165 .. 21159306 (-)
RNA-Seq ExpressionCsor.00g118470
SyntenyCsor.00g118470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTCTTGTTTGGTCGCTTTGCAGCCTCCCCTCGTGACCTTCTTGTCCAAGCTGATTGTATGAATAAAACCTACAAGTGTAAACATACTGGTCGTTTATCAAAAGAAAACAAAATTTAGAAGCTACTCGACTCTCTTAAAACAGTAAAAGATTCTCTGAAGTGTCAGCAGGAGTGCTCACCAAATTCAGCTTCCCTAAAGAAATTGGATATTGGAAAAGTTACTTCTATTAATAATTATAAGAATGATGTAAAGATGAATTGGAAGGTCAGCGTCGTTTTTACGGATTCTTGTAAGACTTTACTTACGACTCAAATCTTTTTGGATTAGAAAAAATAGGAGGTGGTGCAGACAGATTTTAGCAAAAGAAGTTGCCTCGTTCCATAAGAGGCGTTACTCGCTCCAAAAGAAGTTGCCTCGTTGCCCGGAGAAGACTCTTGTAAGGCATTCAATCTTTATTACAGCCCTTTAATGAGACGAACGGAATTCCCTTGATAACGTTTCAGTTCAGCCAACGCCATTAATGAAGACGTCTCTTGAGGCCGGTTTTTTCCTACAGTTCCCCCTGTAGTTAATGCTTCCCTTCCAGTTCAAGAGGTTTCGCCTATTGCCAAGAATGTTTCGCATTCGAATCCTTCCAGTACAGAGATTCTCAGCCCTCATGGTACTAAATTGGTTTAAGGAGATCAAAGGAATCTCACCCTCTTCATTATTCTCGGAAAAAAGAAATGGTTGCTTCTTTTATAATTTTTCCAGAAGTTTCTTTAATCAATCCAGATGTTGAAGAAGGTTGTTTGCGACTCTTGGGCTCCTCTTCTCTTAAACTCTGTTTGGATACAAGTGAAGATCCAAAGACGTTCTCTTCCATACCTTGTAGTCAAACATTAACTGCTCTTGTGATTCAGGAACTGCTTTGATTAAAGGAGTTGTCATTCCTTCTTCCAATCATTACGAAAAGCAGGAACTCTTATCCTATGGTATAATAGATTCTGATTATTGATAGATGGAAGCGCTTTACTCTATCTAGGGAAAGCCTTATTATATGTCTTTAGTTCTTATGGTCTTTGGTTAGAGTGGAGTTCAAAAGACTTCTCCAATTTTTCTTTGAGAAGGAAAGGAAGGGGGGAAAGTAACTCATTTGGTTCGCCGGAGCATTGTTACAAAAGCTCAGAATGATGGTGGTCTTGAAATAGGAGCATTGAAAACAGGAATTTGGCTTTGATAGCATAATGAGGTTGGTGTTTTATAAATGAACCTTCTTCTTGTTGGCAACAGGTTATTGCTAGTATTCATGGGTCTGACATTAATGGTTGGCATTCAGGTAGAAGAAATGGTTTGAGTTTACACAGTCCTTGGCTAAATATCTATAAGAACTGGTCTCGACTAGAAAGCCATGCTCATTTCAAGTTGGGGAATCGAAGAAGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGTGGAAAGATCTTTGGTTACCTAACCTTCTTTAAAGCCTTGCTATCCTCGGCTATTTGTTATTGCTTCTACTCCAAATGGTTTGGTTGCTCTACATCCTATTATCCATGTAGCTGCTAGTAAGCCTCATAATCACAGGCTACAGCGCAAGTGTTGGACCTGTACCCAAGCTTTCCAGATAGCAACAAACTTTTGAACCAATAATATGATATAGACCAAGGAAAATAACTGTCATGAAAGCCGCGTTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAACCATCTAGATTGTAGACAGATGGTAGTTGGTGAGGGATAATGCAGGGTGTGGAAACCTTCCCCTAGTAAACGCGTTTTAAAGTATTGAGGGAAAGCCCAAAAGGGAAAGCTCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGTCGTTACACGTATCCATAACAGCATTGCCACCAAAGGGGGCTTTTCTATTCCAATTCTTCAAAAAGACAGATGTTGTACTTCGTTCAATGCAAAACTTCCTGAATGTTGCTCAAGTCAGTAAGTTGCTAATATAACCAAGATGTGTCCGTGGATTTCAACTTAGGGAACTTCTCCCAGGTTTAACCAAGTGGTCATGGGTTCAAAACGGCTCAAGTGTATTTATTCTAAATCTGAAAGGTTGCCATCAATTTCAAGCTCAATTTAAATACAAGGTAGAAATGAAGAATTTGAAAGATACGGAACTGGAGAACTGCCCAGCAACAGCAATAAAGCCATTTGACCTGGAACGAAGCAGAAAATAGTTGAGAACTCTCTGTATACAATGTAATAGTCATTTCTATCTTTTCCAGCCATAATAACAGCACGACTATTCACCTAAAGATGACTGCCGGCAGTATTCTTTCAAATTCTCAAACCATATCCTGAAGAGCAAGTTTTATGAAAGTTACAATATAGTCGAGTTCGTATTGTCCATTGGCTTGAATACATAACTGCCAGCAAATCCACAACAGATAACTTCCTCACAAATAATTCTCCTTCCCCAACTTTTGCACTAGTGTTTCAGGTTTCAGGTTTCCGGTTTATTTTGATTCCATTCCTATACCAATCGATTTGTCTGAAACTAGATTTTCACATAACTTATCCCAATAGAAGTGAACAACAAGAGAGAAAATAGCCAAAAATTTTAAGAATAATCAAAGCAACTTGTTTTGCCTTTGTAAATTTGTTAGTTCCAGAATTTTTTCATATAAAAACCAAGTACATGTGCAAGAAATTCGTGGTCCACAACAGATAAATCATAAACTTAAAAATGGAAATAAGATATCTTCCGGAATAAACAGGGAATTGAATAGGCTGCCAGTAAAGAAATTATACCTTGGCATGCGCGGGATTCGAGGAGACAAAAGGGGAGCCTCTAGATAGGCTAATGGACGGAAATGAAGATGCCCACGAGAGAGATGAGGATTTCTGTGGAGTGGTGGGAGTTGATATGCACTGGGAGGAGAGAATTGAACGCACAAAAGCACTAGACGGCATTGAAGAAGATATTGCTGTGAACGCCATGGTTCAGATTCAGTTCATTCGTCCACCCACGACTTCTTTGGTGGAAGTGCTCAATTTACAACGCTCGCGGTAG

mRNA sequence

ATGATTTCTTGTTTGGTCGCTTTGCAGCCTCCCCTCGTGACCTTCTTGTCCAAGCTGATTGAGTGCTCACCAAATTCAGCTTCCCTAAAGAAATTGGATATTGGAAAAGTTACTTCTATTAATAATTATAAGAATGATGTAAAGATGAATTGGAAGGTCAGCGTCGTTTTTACGGATTCTTTTCCCCCTGTAGTTAATGCTTCCCTTCCAGTTCAAGAGGTTTCGCCTATTGCCAAGAATGTTTCGCATTCGAATCCTTCCAGTACAGAGATTCTCAGCCCTCATGGAACTGCTTTGATTAAAGGAGTTGTCATTCCTTCTTCCAATCATTACGAAAAGCAGGAACTCTTATCCTATGCATTGCCACCAAAGGGGGCTTTTCTATTCCAATTCTTCAAAAAGACAGATGTTGTACTTCGTTCAATGCAAAACTTCCTGAATGTTGCTCAAGTCAGGGAGCCTCTAGATAGGCTAATGGACGGAAATGAAGATGCCCACGAGAGAGATGAGGATTTCTGTGGAGTGGTGGGAGTTGATATGCACTGGGAGGAGAGAATTGAACGCACAAAAGCACTAGACGGCATTGAAGAAGATATTGCTGTGAACGCCATGGTTCAGATTCAGTTCATTCGTCCACCCACGACTTCTTTGGTGGAAGTGCTCAATTTACAACGCTCGCGGTAG

Coding sequence (CDS)

ATGATTTCTTGTTTGGTCGCTTTGCAGCCTCCCCTCGTGACCTTCTTGTCCAAGCTGATTGAGTGCTCACCAAATTCAGCTTCCCTAAAGAAATTGGATATTGGAAAAGTTACTTCTATTAATAATTATAAGAATGATGTAAAGATGAATTGGAAGGTCAGCGTCGTTTTTACGGATTCTTTTCCCCCTGTAGTTAATGCTTCCCTTCCAGTTCAAGAGGTTTCGCCTATTGCCAAGAATGTTTCGCATTCGAATCCTTCCAGTACAGAGATTCTCAGCCCTCATGGAACTGCTTTGATTAAAGGAGTTGTCATTCCTTCTTCCAATCATTACGAAAAGCAGGAACTCTTATCCTATGCATTGCCACCAAAGGGGGCTTTTCTATTCCAATTCTTCAAAAAGACAGATGTTGTACTTCGTTCAATGCAAAACTTCCTGAATGTTGCTCAAGTCAGGGAGCCTCTAGATAGGCTAATGGACGGAAATGAAGATGCCCACGAGAGAGATGAGGATTTCTGTGGAGTGGTGGGAGTTGATATGCACTGGGAGGAGAGAATTGAACGCACAAAAGCACTAGACGGCATTGAAGAAGATATTGCTGTGAACGCCATGGTTCAGATTCAGTTCATTCGTCCACCCACGACTTCTTTGGTGGAAGTGCTCAATTTACAACGCTCGCGGTAG

Protein sequence

MISCLVALQPPLVTFLSKLIECSPNSASLKKLDIGKVTSINNYKNDVKMNWKVSVVFTDSFPPVVNASLPVQEVSPIAKNVSHSNPSSTEILSPHGTALIKGVVIPSSNHYEKQELLSYALPPKGAFLFQFFKKTDVVLRSMQNFLNVAQVREPLDRLMDGNEDAHERDEDFCGVVGVDMHWEERIERTKALDGIEEDIAVNAMVQIQFIRPPTTSLVEVLNLQRSR
Homology
[Close]
BLAST of Csor.00g118470 vs. NCBI nr
Match: KAG6602739.1 (hypothetical protein SDJN03_07972, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 445 bits (1145), Expect = 1.48e-157
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0 

Query: 1   MISCLVALQPPLVTFLSKLIECSPNSASLKKLDIGKVTSINNYKNDVKMNWKVSVVFTDS 60
           MISCLVALQPPLVTFLSKLIECSPNSASLKKLDIGKVTSINNYKNDVKMNWKVSVVFTDS
Sbjct: 1   MISCLVALQPPLVTFLSKLIECSPNSASLKKLDIGKVTSINNYKNDVKMNWKVSVVFTDS 60

Query: 61  FPPVVNASLPVQEVSPIAKNVSHSNPSSTEILSPHGTALIKGVVIPSSNHYEKQELLSYA 120
           FPPVVNASLPVQEVSPIAKNVSHSNPSSTEILSPHGTALIKGVVIPSSNHYEKQELLSYA
Sbjct: 61  FPPVVNASLPVQEVSPIAKNVSHSNPSSTEILSPHGTALIKGVVIPSSNHYEKQELLSYA 120

Query: 121 LPPKGAFLFQFFKKTDVVLRSMQNFLNVAQVREPLDRLMDGNEDAHERDEDFCGVVGVDM 180
           LPPKGAFLFQFFKKTDVVLRSMQNFLNVAQVREPLDRLMDGNEDAHERDEDFCGVVGVDM
Sbjct: 121 LPPKGAFLFQFFKKTDVVLRSMQNFLNVAQVREPLDRLMDGNEDAHERDEDFCGVVGVDM 180

Query: 181 HWEERIERTKALDGIEEDIAVNAMVQIQFIRPPTTSLVEVLNLQRSR 227
           HWEERIERTKALDGIEEDIAVNAMVQIQFIRPPTTSLVEVLNLQRSR
Sbjct: 181 HWEERIERTKALDGIEEDIAVNAMVQIQFIRPPTTSLVEVLNLQRSR 227

The following BLAST results are available for this feature:
BLAST of Csor.00g118470 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g118470 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6602739.11.48e-157100.00hypothetical protein SDJN03_07972, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g118470 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g118470 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g118470.m01Csor.00g118470.m01mRNA