Csor.00g118280 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g118280
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr01: 8464631 .. 8465424 (+)
RNA-Seq ExpressionCsor.00g118280
SyntenyCsor.00g118280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTAAACGATACGGGGTGGTCGAGAACTACTATAGGGAATTGATAGCAATTTTCATCCCAGCTTGGCAGTGGCCTGGAGTGGTGCATATGAAGAAGTTCTGTCCTCTTGAGAGCATGATTTCATCCTTGCCTGAATTGAACACTTTGGCGCCTCTTGGAGCTATGCAGCTTCTATATCCCCCCTCATCCACTGCCACCACGTTGTGAACGGTTGGGATATAGTTGAATCCTACAAAAAAAAAAAAAAAAAAAATAATGTATCTATTCGTTTAGTTTATTATCAACGATCTAACTGCGAATTCGATCGATCGGATACTATTTGAATATATTTTATATAATCGTAATGTAACGACAGGCTTTCCCTCAAGGCTTTAAAACGAGTGGACTTGTGTTTTGATATAATTTATCTTATCTTCGGGATTTGGTTAGTAGAATATTTTCTCTTTTCTCGAACTTTCGATCCCACTTCTGTTTTTCATTTTTAACATAGTATCAAAGCATCATTCTTAACAAATACGATTACGCAAGTAAAACATCAGTTACTATTCAACTATCAAAACGAGAGTTGAAAACTCACTTAATATGTCACCGGCTCTAAACACCTTGCCATTAGGCCATCCTTCCGTGCCCAGGTTCCATCCGTTCGAGTCGCCAACAACAAAAGTTGTAGCAGCATCGCCATGTTCGAAGCCAGTCAGTCAGCAGCAGCAACGCCATTACAACAGCCACCGTGCTCATCGAAACCGCTCCGCTGCTCCCCTCGTGTCGAGCCATTCGTGAAGTCGAAGTAG

mRNA sequence

ATGTGTAAACGATACGGGGTGGTCGAGAACTACTATAGGGAATTGATAGCAATTTTCATCCCAGCTTGGCAGTGGCCTGGAGTGGTGCATATGAAGAAGTTCTGTCCTCTTGAGAGCATGATTTCATCCTTGCCTGAATTGAACACTTTGGCGCCTCTTGGAGCTATGCAGCTTCTATATCCCCCCTCATCCACTGCCACCACGCCATCCTTCCGTGCCCAGGTTCCATCCGTTCGAGTCGCCAACAACAAAAGTTGTAGCAGCATCGCCATGTTCGAAGCCAGTCAGTCAGCAGCAGCAACGCCATTACAACAGCCACCGTGCTCATCGAAACCGCTCCGCTGCTCCCCTCGTGTCGAGCCATTCGTGAAGTCGAAGTAG

Coding sequence (CDS)

ATGTGTAAACGATACGGGGTGGTCGAGAACTACTATAGGGAATTGATAGCAATTTTCATCCCAGCTTGGCAGTGGCCTGGAGTGGTGCATATGAAGAAGTTCTGTCCTCTTGAGAGCATGATTTCATCCTTGCCTGAATTGAACACTTTGGCGCCTCTTGGAGCTATGCAGCTTCTATATCCCCCCTCATCCACTGCCACCACGCCATCCTTCCGTGCCCAGGTTCCATCCGTTCGAGTCGCCAACAACAAAAGTTGTAGCAGCATCGCCATGTTCGAAGCCAGTCAGTCAGCAGCAGCAACGCCATTACAACAGCCACCGTGCTCATCGAAACCGCTCCGCTGCTCCCCTCGTGTCGAGCCATTCGTGAAGTCGAAGTAG

Protein sequence

MCKRYGVVENYYRELIAIFIPAWQWPGVVHMKKFCPLESMISSLPELNTLAPLGAMQLLYPPSSTATTPSFRAQVPSVRVANNKSCSSIAMFEASQSAAATPLQQPPCSSKPLRCSPRVEPFVKSK
Homology
[Close]
BLAST of Csor.00g118280 vs. NCBI nr
Match: KAG6607682.1 (hypothetical protein SDJN03_01024, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255 bits (651), Expect = 1.50e-85
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MCKRYGVVENYYRELIAIFIPAWQWPGVVHMKKFCPLESMISSLPELNTLAPLGAMQLLY 60
           MCKRYGVVENYYRELIAIFIPAWQWPGVVHMKKFCPLESMISSLPELNTLAPLGAMQLLY
Sbjct: 1   MCKRYGVVENYYRELIAIFIPAWQWPGVVHMKKFCPLESMISSLPELNTLAPLGAMQLLY 60

Query: 61  PPSSTATTPSFRAQVPSVRVANNKSCSSIAMFEASQSAAATPLQQPPCSSKPLRCSPRVE 120
           PPSSTATTPSFRAQVPSVRVANNKSCSSIAMFEASQSAAATPLQQPPCSSKPLRCSPRVE
Sbjct: 61  PPSSTATTPSFRAQVPSVRVANNKSCSSIAMFEASQSAAATPLQQPPCSSKPLRCSPRVE 120

Query: 121 PFVKSK 126
           PFVKSK
Sbjct: 121 PFVKSK 126

[Close]
BLAST of Csor.00g118280 vs. NCBI nr
Match: KAF2599840.1 (hypothetical protein F2Q68_00011348 [Brassica cretica] >KAF3555898.1 hypothetical protein F2Q69_00010892 [Brassica cretica])

HSP 1 Score: 73.6 bits (179), Expect = 1.89e-14
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 7  VVENYYRELIAIFIPAWQWPGVVHMKKFCPLESMISSLPELNTLAPLGAMQLLYPPSSTA 66
          +++     + AIFI A QWPG + MKKFCPL+ +I S PE+  LA  G +QLLYPP STA
Sbjct: 1  MIDQDQTAVTAIFIAASQWPGKLQMKKFCPLDKVIRSFPEVYVLARAGVLQLLYPPLSTA 60

Query: 67 TT 68
          TT
Sbjct: 61 TT 62

The following BLAST results are available for this feature:
BLAST of Csor.00g118280 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g118280 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6607682.11.50e-85100.00hypothetical protein SDJN03_01024, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF2599840.11.89e-1454.84hypothetical protein F2Q68_00011348 [Brassica cretica] >KAF3555898.1 hypothetica... [more]
BLAST of Csor.00g118280 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g118280 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g118280.m01Csor.00g118280.m01mRNA