Csor.00g117020 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g117020
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	cytochrome c6, chloroplastic
Location	Csor_Chr07: 138497 .. 141074 (+)
RNA-Seq Expression	Csor.00g117020
Synteny	Csor.00g117020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTTTCTCTCCGTAACTTCAGCTTTTAGCCTTAGTCCCCATTGCTTTCCACTAAGGGTTGATCTCTCTTCGCTAACTCTTCTTTGTATGCTTCTCTCGCTGAATATCGAAGGTTTTAAAGTTTTAAGCCTACCAGGTACAGCGACGAACTGCTGTTTGTCAAATGCGTAGACAAGTTAAGATTCTCAAGACCTTGGCGCCCCCTCTGATTGCTGTGCTTATAGCGTTATATCCTCTCAACAAAACCCCAGGTGAAACTCTTCCTTTCAATTTGCTACACGATATAAACGCATGATAGCAGCATGATCAAATTTTCCCAGAATCAGGTGTAGGGTGACTGTCTGGAAGTTGCTAAATCGTCGCTAATCTCACATTTGGGGCTAATTTATGAATTTGTGTCTTTTTTTTTTTTTTTTTTTTTTTGAGAAAGCATTTTTCATGGATTATCACATCAAACAGATGGTTACCATTTAACGAAAGTCGACTTGTGTATTCAATTAATATTTGGAAGTGTGTGAGAGAAATATCCGCTTCTGTCCCCACATTCTGTTTCCTAGTGTTACCGTCTTCCTTCATTCCATGTCAAAAGTTATTCATACGCTCATTAAGCTAAAGTCAGTCCACATTACTATGTAAATTAGGAAACAAATACAAATATTACAAACTTCCATAAAAATATGCAAAATCATGAGCAACTTGTTTCCTTTGCGGTTTCTGCTGCCCTTTTTGTTTCTTGTTCGTTGTTATTATCTTTAAAAAAAATGTGCATTTCGTGGTTTCTTTTTTCCTTTTTCAAGAAACGATTTCGACATTACACATAGTTTTCCCTAAACAAAAATGTTTACATAATCGATCTTTTATTTCTTACCCCTGTCACGTCAATTTCTTTCTTTCTTTTTCTTTTTCAAGCGAAGTTTTTCGTTTGAAATTTGGAAGCCGAAAAACCCAAATTTGAAACGACATCCAATAGACCCTCAATATACTTCTTTCTCTTAACGCATATCAAAGGATCTTTTTGACGTGCAATTGTTTATACTTTTTTCTGACTTGGCTGGCATCCATGTAATGTGTAAGAAGGATGTTATGCGCTTGCTCAATCGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAGTCACGCTTGCATTGGCTGCCATGATGCTGGGGGAAACATAATTCAACCCGTTAGTGTTCCTATCTATAACACTACTGTTTAAATATTGATAAGCATCTGAGATCTGCTTTAATATGTTGGATTTTGAATTTTTATGAACGGTTATGTGGTTTCAATTTTTTTTCTTTTGCTATTCTTTCTGTGTGCTACATTTCTGCTGTTTCTGCAACCGACCTTTTGTCTTCTTCTCTCGTAGGGTGCGACGCTCTTTTCAAGTGATCTTGAAAGGTAATTTTCTAGAACCTTGAGAAAAAATGAAGTTTAATAACAGTATATGATTTCGGCCCAATGTGCATGCAACATTGCGTACTAGTATCATGAGGTATTAGGACGCGTATCTACTTTCTCTTCTCTTCTAATTATGTGTTCTATTTAAAATAATCATTTTTTTTATTTTTTTATTTTGTACAAGTGACTATAGTTTAGATTGGTTATGGATGAGGAAGATGGTAGATTCACGATTAAGGGCAATAGCTCTTTTGTTGTATGGATTTTTTGGTAGGGTCCAAAAGATCTACATGGTCTTAGACTCTTAGCTCAAAATGGGAAAAATCAGCAAATATGCCAAGAACTGATTTTTTTTTCACCTGTCTTCAATTGTACAAGGGAAACTCGCTTGACTACATTTTTATTTTCCATTTTTCTTAAATATAGTATACAATTTAACCCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAATATCAACTTCTGCTTCTAAAATATATTGGGGAAGGGTACGGGGTGGTGAACATCCAATCAACCCTGAAGGAAATCTGAAGATTGAATTGGTGCGTTCCTATCAGTAAATTTTTTAAGGGAAATATACAAAACTCATTGCAACAGAGGACGTCATAAACGAGACAACAATATGTATTCTACTGGACAAGCACCCTATAACACCCTGCTTGTGTTAAAAAAAGAAAAAAAGAAAAAAAACTATTTTACAAAGAGTCTGTATATAATAAAATTCTCGAAATTTCTCCATATCCAGCAATGCAGAAATCGCTTTACCAATTGTGTTTATGAGGTGATTGAACCAAGTCGAACGATAGTGAATGGTTGTTGTCTTGAAACCATAGGCTTGAGCTATTAGTTCTATAACCCTTTGCTCTGTTTCATTGTTCCTTTTTATAGAAACAGAGCTGATTCTGAAGAGGAGATTTACCAAATTACATATTACGGGAAAGGAAGAATGCCTGTAAGTGATTATTTGTTAATATTATGACTGTAACCAATATGGCTCTATTAGTTCAACGATTGGTGATGGGTTTCAGGGTTTCGGTGAAAACTGCAAGCCAAGGGGTCAGTGCACATTTGGTCCCCGTTTGCAGGAGGAAGAGATTAGGGTTTTGGCGAAGTTTGTAAAGATACAGGCTGATCGGGGGTGGCTAAACCCATAG

mRNA sequence

ATGCGTTTTCTCTCCGTAACTTCAGCTTTTAGCCTTAGTCCCCATTGCTTTCCACTAAGGGTACAGCGACGAACTGCTGTTTGTCAAATGCGTAGACAAGTTAAGATTCTCAAGACCTTGGCGCCCCCTCTGATTGCTGTGCTTATAGCGTTATATCCTCTCAACAAAACCCCAGAAGGATGTTATGCGCTTGCTCAATCGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAGTCACGCTTGCATTGGCTGCCATGATGCTGGGGGAAACATAATTCAACCCGGTGCGACGCTCTTTTCAAGTGATCTTGAAAGAAACAGAGCTGATTCTGAAGAGGAGATTTACCAAATTACATATTACGGGAAAGGAAGAATGCCTGGTTTCGGTGAAAACTGCAAGCCAAGGGGTCAGTGCACATTTGGTCCCCGTTTGCAGGAGGAAGAGATTAGGGTTTTGGCGAAGTTTGTAAAGATACAGGCTGATCGGGGGTGGCTAAACCCATAG

Coding sequence (CDS)

ATGCGTTTTCTCTCCGTAACTTCAGCTTTTAGCCTTAGTCCCCATTGCTTTCCACTAAGGGTACAGCGACGAACTGCTGTTTGTCAAATGCGTAGACAAGTTAAGATTCTCAAGACCTTGGCGCCCCCTCTGATTGCTGTGCTTATAGCGTTATATCCTCTCAACAAAACCCCAGAAGGATGTTATGCGCTTGCTCAATCGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAGTCACGCTTGCATTGGCTGCCATGATGCTGGGGGAAACATAATTCAACCCGGTGCGACGCTCTTTTCAAGTGATCTTGAAAGAAACAGAGCTGATTCTGAAGAGGAGATTTACCAAATTACATATTACGGGAAAGGAAGAATGCCTGGTTTCGGTGAAAACTGCAAGCCAAGGGGTCAGTGCACATTTGGTCCCCGTTTGCAGGAGGAAGAGATTAGGGTTTTGGCGAAGTTTGTAAAGATACAGGCTGATCGGGGGTGGCTAAACCCATAG

Protein sequence

MRFLSVTSAFSLSPHCFPLRVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPEGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNRADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWLNP

Homology

[Close]

BLAST of Csor.00g117020 vs. ExPASy Swiss-Prot
Match: Q93VA3 (Cytochrome c6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETJ PE=1 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 7.3e-49
Identity = 89/129 (68.99%), Postives = 108/129 (83.72%), Query Frame = 0


Query: 36  ILKTLAPPLIAVLIALYPLNKTPEGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPG 95
           +LK LAPPL AVL+A+ P+   PE   +L Q+ +I+RG  LF+ ACIGCHD GGNIIQPG
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPPE---SLGQTLDIQRGATLFNRACIGCHDTGGNIIQPG 103

Query: 96  ATLFSSDLERNRADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKF 155
           ATLF+ DLERN  D+EEEIY++TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI++LA+F
Sbjct: 104 ATLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEF 163

Query: 156 VKIQADRGW 165
           VK QAD+GW
Sbjct: 164 VKFQADQGW 169

[Close]

BLAST of Csor.00g117020 vs. ExPASy Swiss-Prot
Match: P25935 (Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=petJ PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-09
Identity = 40/130 (30.77%), Postives = 61/130 (46.92%), Query Frame = 0


Query: 35  KILKTLAPPLIAVLIALYPLNKTPEGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQP 94
           +IL T    L+ +L  + P           AQ+A++  GG +FS  C  CH  G N++ P
Sbjct: 3   RILGTAIAALVVLLAFIAP-----------AQAADLAHGGQVFSANCAACHLGGRNVVNP 62

Query: 95  GATLFSSDLERNRADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAK 154
             TL  +DL++    S E I      GKG MP FG             +L  ++I  +A 
Sbjct: 63  AKTLQKADLDQYGMASIEAITTQVTNGKGAMPAFGS------------KLSADDIADVAS 109

Query: 155 FVKIQADRGW 165
           +V  Q+++GW
Sbjct: 123 YVLDQSEKGW 109

[Close]

BLAST of Csor.00g117020 vs. ExPASy Swiss-Prot
Match: P07497 (Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=petJ PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-09
Identity = 40/130 (30.77%), Postives = 61/130 (46.92%), Query Frame = 0


Query: 35  KILKTLAPPLIAVLIALYPLNKTPEGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQP 94
           +IL T    L+ +L  + P           AQ+A++  GG +FS  C  CH  G N++ P
Sbjct: 3   RILGTAIAALVVLLAFIAP-----------AQAADLAHGGQVFSANCAACHLGGRNVVNP 62

Query: 95  GATLFSSDLERNRADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAK 154
             TL  +DL++    S E I      GKG MP FG             +L  ++I  +A 
Sbjct: 63  AKTLQKADLDQYGMASIEAITTQVTNGKGAMPAFGS------------KLSADDIADVAS 109

Query: 155 FVKIQADRGW 165
           +V  Q+++GW
Sbjct: 123 YVLDQSEKGW 109

[Close]

BLAST of Csor.00g117020 vs. ExPASy Swiss-Prot
Match: P00116 (Cytochrome c6 OS=Aphanizomenon flos-aquae OX=1176 GN=petJ PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-08
Identity = 35/97 (36.08%), Postives = 45/97 (46.39%), Query Frame = 0


Query: 68  AEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNRADSEEEIYQITYYGKGRMPG 127
           A+   G ALF   C  CH  GGN++    TL    LE+    S + I     +GKG MP 
Sbjct: 1   ADTVSGAALFKANCAQCHVGGGNLVNRAKTLKKEALEKYNMYSAKAIIAQVTHGKGAMP- 60

Query: 128 FGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGW 165
                       FG RL+ E+I  +A +V  QAD GW
Sbjct: 61  -----------AFGIRLKAEQIENVAAYVLEQADNGW 85

[Close]

BLAST of Csor.00g117020 vs. ExPASy Swiss-Prot
Match: P00110 (Cytochrome c6 OS=Bumilleriopsis filiformis OX=2835 GN=petJ PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-08
Identity = 35/98 (35.71%), Postives = 49/98 (50.00%), Query Frame = 0


Query: 68  AEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNRADSEEEI-YQITYYGKGRMP 127
           A+IE G  +F+  C  CH  G N+I P  TL    LE N  ++   I YQ+T  GK  MP
Sbjct: 1   ADIENGERIFTANCAACHAGGNNVIMPEKTLKKDALEANGMNAVSAITYQVT-NGKNAMP 60

Query: 128 GFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGW 165
                        FG RL + +I  +A +V  Q+++GW
Sbjct: 61  ------------AFGGRLSDSDIEDVANYVLSQSEQGW 85

[Close]

BLAST of Csor.00g117020 vs. NCBI nr
Match: KAG6594380.1 (Cytochrome c6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 346 bits (888), Expect = 2.33e-120
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRFLSVTSAFSLSPHCFPLRVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPEG 60
           MRFLSVTSAFSLSPHCFPLRVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPEG
Sbjct: 1   MRFLSVTSAFSLSPHCFPLRVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPEG 60

Query: 61  CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNRADSEEEIYQITYY 120
           CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNRADSEEEIYQITYY
Sbjct: 61  CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNRADSEEEIYQITYY 120

Query: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWLNP 167
           GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWLNP
Sbjct: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWLNP 167

[Close]

BLAST of Csor.00g117020 vs. NCBI nr
Match: XP_022926876.1 (cytochrome c6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 330 bits (847), Expect = 4.03e-114
Identity = 162/167 (97.01%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 1   MRFLSVTSAFSLSPHCFPLRVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPEG 60
           MRFLSVTS FSLSPHCFPL+VQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTP G
Sbjct: 1   MRFLSVTSDFSLSPHCFPLKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTP-G 60

Query: 61  CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNRADSEEEIYQITYY 120
           CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERN ADSEEEIYQITYY
Sbjct: 61  CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYY 120

Query: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWLNP 167
           GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGW NP
Sbjct: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of Csor.00g117020 vs. NCBI nr
Match: XP_023517564.1 (cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328 bits (841), Expect = 3.32e-113
Identity = 161/167 (96.41%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MRFLSVTSAFSLSPHCFPLRVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPEG 60
           MRFLSVTS FSLSPHCFPL+VQRRTAVCQMRRQV ILKTLAPPLIAVLIALYPLNKTP G
Sbjct: 1   MRFLSVTSDFSLSPHCFPLKVQRRTAVCQMRRQVTILKTLAPPLIAVLIALYPLNKTP-G 60

Query: 61  CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNRADSEEEIYQITYY 120
           CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERN ADSEEEIYQITYY
Sbjct: 61  CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYY 120

Query: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWLNP 167
           GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGW NP
Sbjct: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of Csor.00g117020 vs. NCBI nr
Match: XP_023003546.1 (cytochrome c6, chloroplastic [Cucurbita maxima])

HSP 1 Score: 315 bits (806), Expect = 7.21e-108
Identity = 154/167 (92.22%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MRFLSVTSAFSLSPHCFPLRVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPEG 60
           MR LSV S FSLSPHCF L+VQRRT VC+MRRQVK LK LAPPLIAVLIALYPLNKTP G
Sbjct: 1   MRLLSVISDFSLSPHCFTLKVQRRTTVCRMRRQVKFLKALAPPLIAVLIALYPLNKTP-G 60

Query: 61  CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNRADSEEEIYQITYY 120
           CYALAQSAEIERGGALFSHACIGCHD GGNIIQPGATLFSSDLERN ADSEEEIYQITYY
Sbjct: 61  CYALAQSAEIERGGALFSHACIGCHDGGGNIIQPGATLFSSDLERNGADSEEEIYQITYY 120

Query: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWLNP 167
           GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGW NP
Sbjct: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of Csor.00g117020 vs. NCBI nr
Match: XP_038877732.1 (cytochrome c6, chloroplastic [Benincasa hispida])

HSP 1 Score: 285 bits (728), Expect = 5.62e-96
Identity = 136/167 (81.44%), Postives = 149/167 (89.22%), Query Frame = 0


Query: 1   MRFLSVTSAFSLSPHCFPLRVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPEG 60
           M  LS TS F  +PHCFPL+ +RRT VCQ+R QVKIL +LAPPLIAV +AL PLN+TP G
Sbjct: 1   MHLLSATSNFCPTPHCFPLKEKRRTVVCQIRTQVKILNSLAPPLIAVFLALSPLNQTP-G 60

Query: 61  CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNRADSEEEIYQITYY 120
           C ALAQ+AEIERGGALF+ ACIGCHD GGNIIQPGATLFSSDLERN AD+EEEIY+ITYY
Sbjct: 61  CLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYY 120

Query: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWLNP 167
           GKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK+QADRGW NP
Sbjct: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP 166

[Close]

BLAST of Csor.00g117020 vs. ExPASy TrEMBL
Match: A0A6J1EG38 (cytochrome c6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433859 PE=3 SV=1)

HSP 1 Score: 330 bits (847), Expect = 1.95e-114
Identity = 162/167 (97.01%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 1   MRFLSVTSAFSLSPHCFPLRVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPEG 60
           MRFLSVTS FSLSPHCFPL+VQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTP G
Sbjct: 1   MRFLSVTSDFSLSPHCFPLKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTP-G 60

Query: 61  CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNRADSEEEIYQITYY 120
           CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERN ADSEEEIYQITYY
Sbjct: 61  CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYY 120

Query: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWLNP 167
           GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGW NP
Sbjct: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of Csor.00g117020 vs. ExPASy TrEMBL
Match: A0A6J1KPJ4 (cytochrome c6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497114 PE=3 SV=1)

HSP 1 Score: 315 bits (806), Expect = 3.49e-108
Identity = 154/167 (92.22%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MRFLSVTSAFSLSPHCFPLRVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPEG 60
           MR LSV S FSLSPHCF L+VQRRT VC+MRRQVK LK LAPPLIAVLIALYPLNKTP G
Sbjct: 1   MRLLSVISDFSLSPHCFTLKVQRRTTVCRMRRQVKFLKALAPPLIAVLIALYPLNKTP-G 60

Query: 61  CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNRADSEEEIYQITYY 120
           CYALAQSAEIERGGALFSHACIGCHD GGNIIQPGATLFSSDLERN ADSEEEIYQITYY
Sbjct: 61  CYALAQSAEIERGGALFSHACIGCHDGGGNIIQPGATLFSSDLERNGADSEEEIYQITYY 120

Query: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWLNP 167
           GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGW NP
Sbjct: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of Csor.00g117020 vs. ExPASy TrEMBL
Match: A0A1S3AYD3 (cytochrome c6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484246 PE=3 SV=1)

HSP 1 Score: 273 bits (697), Expect = 1.60e-91
Identity = 135/170 (79.41%), Postives = 146/170 (85.88%), Query Frame = 0


Query: 1   MRFLSVTSAFS---LSPHCFPLRVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKT 60
           M+ LSVTS F     SPH FPL   RRT VCQ+R  VKIL+TLAPPLIA+L+ L PLNKT
Sbjct: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60

Query: 61  PEGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNRADSEEEIYQI 120
           P GC  LA++ EIERGGALF+ ACIGCHD GGNIIQPGATLFSSDLERN AD+EEEIY+I
Sbjct: 61  P-GCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI 120

Query: 121 TYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWLNP 167
           TYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGW NP
Sbjct: 121 TYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 169

[Close]

BLAST of Csor.00g117020 vs. ExPASy TrEMBL
Match: A0A6J1CXZ2 (cytochrome c6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015832 PE=3 SV=1)

HSP 1 Score: 262 bits (670), Expect = 1.81e-87
Identity = 130/168 (77.38%), Postives = 143/168 (85.12%), Query Frame = 0


Query: 1   MRFLSVTSAFSLSPHCFPLRVQRRTAVCQMR-RQVKILKTLAPPLIAVLIALYPLNKTPE 60
           M  LS  S FS++ HCF ++ +R TAVCQ R +Q+KI K+ APPLIAVLIAL P+ KTP 
Sbjct: 1   MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTP- 60

Query: 61  GCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNRADSEEEIYQITY 120
           GC  LAQ+ EIERGGALFS +CIGCHD GGNIIQPGATLFSSDLERN AD EEEIY ITY
Sbjct: 61  GC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADEEEEIYHITY 120

Query: 121 YGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWLNP 167
           YGKGRMPGFGENCKPRGQCTFGPRLQE+EIR+LAKFVKIQADRGW NP
Sbjct: 121 YGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP 165

[Close]

BLAST of Csor.00g117020 vs. ExPASy TrEMBL
Match: A0A0A0KPD1 (Cytochrome c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G538600 PE=3 SV=1)

HSP 1 Score: 248 bits (633), Expect = 5.42e-82
Identity = 119/146 (81.51%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 22  QRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPEGCYALAQSAEIERGGALFSHAC 81
           +RRT VCQ+R QVKILK L PPLIA+L+ L PLNKT  GC  LA++ EIERGGALF+ +C
Sbjct: 10  KRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT-SGCLVLAETIEIERGGALFNQSC 69

Query: 82  IGCHDAGGNIIQPGATLFSSDLERNRADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFG 141
           IGCHD GGNIIQPGATLFSSDLERN AD+EEEIY+ITY GKGRMPGFGENCKPRGQCTFG
Sbjct: 70  IGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYDGKGRMPGFGENCKPRGQCTFG 129

Query: 142 PRLQEEEIRVLAKFVKIQADRGWLNP 167
           PRLQEEEIR+LAKFVKIQADRGW NP
Sbjct: 130 PRLQEEEIRLLAKFVKIQADRGWPNP 154

[Close]

BLAST of Csor.00g117020 vs. TAIR 10
Match: AT5G45040.1 (Cytochrome c )

HSP 1 Score: 194.9 bits (494), Expect = 5.2e-50
Identity = 89/129 (68.99%), Postives = 108/129 (83.72%), Query Frame = 0


Query: 36  ILKTLAPPLIAVLIALYPLNKTPEGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPG 95
           +LK LAPPL AVL+A+ P+   PE   +L Q+ +I+RG  LF+ ACIGCHD GGNIIQPG
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPPE---SLGQTLDIQRGATLFNRACIGCHDTGGNIIQPG 103

Query: 96  ATLFSSDLERNRADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKF 155
           ATLF+ DLERN  D+EEEIY++TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI++LA+F
Sbjct: 104 ATLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEF 163

Query: 156 VKIQADRGW 165
           VK QAD+GW
Sbjct: 164 VKFQADQGW 169

The following BLAST results are available for this feature:

BLAST of Csor.00g117020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VA3	7.3e-49	68.99	Cytochrome c6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETJ PE=1 SV=1	[more]
P25935	1.5e-09	30.77	Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 G...	[more]
P07497	1.5e-09	30.77	Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) ...	[more]
P00116	1.3e-08	36.08	Cytochrome c6 OS=Aphanizomenon flos-aquae OX=1176 GN=petJ PE=1 SV=1	[more]
P00110	1.3e-08	35.71	Cytochrome c6 OS=Bumilleriopsis filiformis OX=2835 GN=petJ PE=1 SV=1	[more]

BLAST of Csor.00g117020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594380.1	2.33e-120	100.00	Cytochrome c6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022926876.1	4.03e-114	97.01	cytochrome c6, chloroplastic [Cucurbita moschata]	[more]
XP_023517564.1	3.32e-113	96.41	cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_023003546.1	7.21e-108	92.22	cytochrome c6, chloroplastic [Cucurbita maxima]	[more]
XP_038877732.1	5.62e-96	81.44	cytochrome c6, chloroplastic [Benincasa hispida]	[more]

BLAST of Csor.00g117020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EG38	1.95e-114	97.01	cytochrome c6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433859 PE=3 ...	[more]
A0A6J1KPJ4	3.49e-108	92.22	cytochrome c6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497114 PE=3 SV...	[more]
A0A1S3AYD3	1.60e-91	79.41	cytochrome c6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484246 PE=3 SV=1	[more]
A0A6J1CXZ2	1.81e-87	77.38	cytochrome c6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015832 PE=3...	[more]
A0A0A0KPD1	5.42e-82	81.51	Cytochrome c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G53860...	[more]

BLAST of Csor.00g117020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45040.1	5.2e-50	68.99	Cytochrome c	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009056	Cytochrome c-like domain	PFAM	PF13442	Cytochrome_CBB3	coord: 68..134 e-value: 1.1E-9 score: 38.5
IPR009056	Cytochrome c-like domain	PROSITE	PS51007	CYTC	coord: 68..160 score: 10.671676
IPR036909	Cytochrome c-like domain superfamily	GENE3D	1.10.760.10		coord: 66..166 e-value: 4.2E-38 score: 131.7
IPR036909	Cytochrome c-like domain superfamily	SUPERFAMILY	46626	Cytochrome c	coord: 62..164
IPR023655	Cytochrome c6	PANTHER	PTHR34688	CYTOCHROME C6, CHLOROPLASTIC	coord: 23..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g117020.m01	Csor.00g117020.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding