Csor.00g116940 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g116940
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr07: 195883 .. 197609 (-)
RNA-Seq Expression	Csor.00g116940
Synteny	Csor.00g116940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTGCTGGGCCATGCTCGTCAGCCCTGTCAAAGGACAGCCACAGTATTTACAAAGGCCTGCAGTGCAACAACCTCAGCACAGAGTTGAAGGAAATTGGAAACATCAAGGCTTCCAGGCTTTGCTGAGCATCGACGTGAGTTGAGTTGACATGTGGAAATAAGAGCCTCCCACTTTGTCTCTTAATTATGGCTGCAACTGAGAGCATGATGTAACCAAATTGTGTCTTAATTATGGCTCATCAACTCTTACGCTTAGTTTGAGTTCAACCACAACGAGTATCAGTAGGGTGGGTGGGTACAATACAACTCGTCTCTGGTTCTAATTCAACTTACATGATTGCCTCTCTTCAACTGCAACTCATACTATGGTATCAGGAAAATCATCATAAACAAGGAAGATTATGGATAAATGTGCTGGTGGCAAGAACAAAGTGAGTTGACCTCCTCTGTGATCATATATACATATAAAATGATTAAAGAAATCAACAGTAGGGGCTAACAGATCTAAGAACTATAGATCTGGGATTTGAGTCCCAAGAAATTCAAACCAAATATGGAAGTTATGGAGAAACAGATAAGTGCAGCCTAGATTGTTCAATTGTTGTCAAGAGTTGTTGAATGACTAAAATATGTCAGCAGGGAGAAACATAGCATCATTCTTTCTTGAATGCAACTTCAGATTCATTTGTGAATACAACCAGACATGTTATCGTGAGAAATGATTCTCACCATTAGCCAAAATGTTAGCTAGAAGAACTGATGTGAAAGCTACTAGTTGAGCTGTCTTGTCTTTTCTTGATTGCTAAAAGATTGATGTTGTCTCTAGTCATTAAATCTAAGTGGAAATCATATATGCAGCAGGTGGATTGATTGTATATGTTCCCCATACCATTATGTATATGTCCGTAGCACAAAGCTACAAATATTTAGCCAATAAAGACGTACCTCAAGCGATTCAATATATACGCGACAACCCGAAAGGCTACATGTAGCATTTCCATAATACTGGGAGTACAGTTCTATACATGCCGATCAAGTTATCATGACTTTCCGGCCAAGACTAAGAATATGCAACAATGAAAGTAAGGTTTGTCCACCAAGTTCTTTGTCGGCCATATGCCCATGAAGATAAAGGTAGAGCTTAAATCAGTAATTCTTCTCCATATTTTTAGAACAAAGAGAGAAAATGTAAGAGAGAAAGAGAGAAAGGGAGGGGGCAATGCTCCAAAAAAGTGGAAACTTGTTTAGTTTCAATGAAGAGAAAAATAGGAGGAGTGCATTAAAACAGGGGAAGAAAGAACTGATAGATCCTCCAAAAGAGGAAAAGTTAGAAATTACTTGGCTTGATGTAATGGACAAAAGATTATATATAGAAAATAATATCATATTAGAAGCCCACAAGAGACATCCAAATGCTATCCTTACTGCACTTTGCACATCCCACATCGGATCAATTAAGCCATGATCTGTTCGCATACGATTACAAAAATTTAAGTACGCACCGCAAGTGAGAATCAAGGCATACCAAGTCATTCAATCACTGAAGCCATTATCTCCTGGAGACAAGGAGCCTCCTTTATCGCCCTCTAAATCTGCAATACATGAAAGGACCCAGATGACCCCTCAACAAAATTTTGCAAAGGAAATGAAATATAGCCTTAATTTCTCAATATTGCTTAACCAGTGCAATAGCAATAGTATTCATGAGCTGAAGCAGGAGTAG

mRNA sequence

ATGCAGTGCTGGGCCATGCTCGTCAGCCCTGTCAAAGGACAGCCACAGTATTTACAAAGGCCTGCAGTGCAACAACCTCAGCACAGAGTTGAAGGAAATTGGAAACATCAAGGCTTCCAGGCTTTGCTGAGCATCGACTACGCACCGCAAGTGAGAATCAAGGCATACCAAGTCATTCAATCACTGAAGCCATTATCTCCTGGAGACAAGGAGCCTCCTTTATCGCCCTCTAAATCTGCAATACATGAAAGGACCCAGATGACCCCTCAACAAAATTTTGCAAAGGAAATGAAATATAGCCTTAATTTCTCAATATTGCTTAACCAGTGCAATAGCAATAGTATTCATGAGCTGAAGCAGGAGTAG

Coding sequence (CDS)

ATGCAGTGCTGGGCCATGCTCGTCAGCCCTGTCAAAGGACAGCCACAGTATTTACAAAGGCCTGCAGTGCAACAACCTCAGCACAGAGTTGAAGGAAATTGGAAACATCAAGGCTTCCAGGCTTTGCTGAGCATCGACTACGCACCGCAAGTGAGAATCAAGGCATACCAAGTCATTCAATCACTGAAGCCATTATCTCCTGGAGACAAGGAGCCTCCTTTATCGCCCTCTAAATCTGCAATACATGAAAGGACCCAGATGACCCCTCAACAAAATTTTGCAAAGGAAATGAAATATAGCCTTAATTTCTCAATATTGCTTAACCAGTGCAATAGCAATAGTATTCATGAGCTGAAGCAGGAGTAG

Protein sequence

MQCWAMLVSPVKGQPQYLQRPAVQQPQHRVEGNWKHQGFQALLSIDYAPQVRIKAYQVIQSLKPLSPGDKEPPLSPSKSAIHERTQMTPQQNFAKEMKYSLNFSILLNQCNSNSIHELKQE

Homology

[Close]

BLAST of Csor.00g116940 vs. NCBI nr
Match: KAG6594388.1 (hypothetical protein SDJN03_10941, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245 bits (625), Expect = 9.55e-82
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MQCWAMLVSPVKGQPQYLQRPAVQQPQHRVEGNWKHQGFQALLSIDYAPQVRIKAYQVIQ 60
           MQCWAMLVSPVKGQPQYLQRPAVQQPQHRVEGNWKHQGFQALLSIDYAPQVRIKAYQVIQ
Sbjct: 1   MQCWAMLVSPVKGQPQYLQRPAVQQPQHRVEGNWKHQGFQALLSIDYAPQVRIKAYQVIQ 60

Query: 61  SLKPLSPGDKEPPLSPSKSAIHERTQMTPQQNFAKEMKYSLNFSILLNQCNSNSIHELKQ 120
           SLKPLSPGDKEPPLSPSKSAIHERTQMTPQQNFAKEMKYSLNFSILLNQCNSNSIHELKQ
Sbjct: 61  SLKPLSPGDKEPPLSPSKSAIHERTQMTPQQNFAKEMKYSLNFSILLNQCNSNSIHELKQ 120

The following BLAST results are available for this feature:

BLAST of Csor.00g116940 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g116940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594388.1	9.55e-82	100.00	hypothetical protein SDJN03_10941, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g116940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g116940 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g116940.m01	Csor.00g116940.m01	mRNA