Csor.00g115480 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g115480
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr07: 904993 .. 905543 (-)
RNA-Seq Expression	Csor.00g115480
Synteny	Csor.00g115480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAAAGACCCCTTCTTCTGGAGCTGAAGTGCAGCAGAAAGAAAGAAAGAAAGAGCGATTGAGTCGAATTGGGTCTGGGTTTGGGTTTGGGTTTGGGTTTAATAGCTACAGAAAAAAGTCAGCCATTCCAAACTTTGAAGGTTGGAGCAGACTGGATTAACCCGACCAAACTGTCCTAATCACGTCAACCTCCTCCCTCCACTTCATGCCACCACATTCAAACCATATTTTTGGTACTACAATTTGCTTACATTATGTGGTTTTTTTTTTTTGTTTTTTTTTTCATTTCTTAAATTGGTTAGTTTGTTTTTTTAAAATTTAGAATTTTGTTTTTATAATTTGATAAAATTTTATAAACACACACACACAAATTAACAAAACTCTTCTAAATAGTTACCTTATTTAGGAAAATCTTATCAAAATATGGAGTTGAAACGATCGAATTTGGTGATGTCATGTGTTGAAAAGAGGGTGGAGCACCGTATCTCCATCCCCGATGACATGCATCTTGTGGTTCAATTTGATTTGAATTTGCATTTAACTCCTTGA

mRNA sequence

ATGCGAAAGACCCCTTCTTCTGGAGCTGAAGTGCAGCAGAAAGAAAGAAAGAAAGAGCGATTGAGTCGAATTGGGTCTGGGTTTGGGTTTGGGTTTGGGTTTAATAGCTACAGAAAAAAGTCAGCCATTCCAAACTTTGAAGGAAAATCTTATCAAAATATGGAGTTGAAACGATCGAATTTGGTGATGTCATGTGTTGAAAAGAGGGTGGAGCACCGTATCTCCATCCCCGATGACATGCATCTTGTGGTTCAATTTGATTTGAATTTGCATTTAACTCCTTGA

Coding sequence (CDS)

ATGCGAAAGACCCCTTCTTCTGGAGCTGAAGTGCAGCAGAAAGAAAGAAAGAAAGAGCGATTGAGTCGAATTGGGTCTGGGTTTGGGTTTGGGTTTGGGTTTAATAGCTACAGAAAAAAGTCAGCCATTCCAAACTTTGAAGGAAAATCTTATCAAAATATGGAGTTGAAACGATCGAATTTGGTGATGTCATGTGTTGAAAAGAGGGTGGAGCACCGTATCTCCATCCCCGATGACATGCATCTTGTGGTTCAATTTGATTTGAATTTGCATTTAACTCCTTGA

Protein sequence

MRKTPSSGAEVQQKERKKERLSRIGSGFGFGFGFNSYRKKSAIPNFEGKSYQNMELKRSNLVMSCVEKRVEHRISIPDDMHLVVQFDLNLHLTP

Homology

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BLAST of Csor.00g115480 vs. NCBI nr
Match: KAG6594534.1 (hypothetical protein SDJN03_11087, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190 bits (482), Expect = 8.61e-61
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MRKTPSSGAEVQQKERKKERLSRIGSGFGFGFGFNSYRKKSAIPNFEGKSYQNMELKRSN 60
          MRKTPSSGAEVQQKERKKERLSRIGSGFGFGFGFNSYRKKSAIPNFEGKSYQNMELKRSN
Sbjct: 1  MRKTPSSGAEVQQKERKKERLSRIGSGFGFGFGFNSYRKKSAIPNFEGKSYQNMELKRSN 60

Query: 61 LVMSCVEKRVEHRISIPDDMHLVVQFDLNLHLTP 94
          LVMSCVEKRVEHRISIPDDMHLVVQFDLNLHLTP
Sbjct: 61 LVMSCVEKRVEHRISIPDDMHLVVQFDLNLHLTP 94

The following BLAST results are available for this feature:

BLAST of Csor.00g115480 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g115480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594534.1	8.61e-61	100.00	hypothetical protein SDJN03_11087, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g115480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g115480 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g115480.m01	Csor.00g115480.m01	mRNA