Csor.00g114950 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g114950
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr07: 1101632 .. 1102442 (+)
RNA-Seq Expression	Csor.00g114950
Synteny	Csor.00g114950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCAGAGGTTAACCGACTGAACCACTAACATTGCTTCTTTAGCTTGGCTTTGTGGCTTTGATTTTGATGCTAATTTTGTAGGATCGAGACATGATCAATGGTTGGCCACTGGGACTCGAGGTTATGAACACCAGAGTTCGAATGGCAGACTCACAGAGGTTACCGCCCACGGATCCCTTCCCTACTTCGCACATTCCTTCAAGGAGTTTCTCCTCTTTGTCTTCCTCTGAACTCGACACCATGGTTCGTAAACTTATGATCTGCATTTCTTTTTTCAAATTAGAGTCGATGAACTTTCCATGATTGCAGCCAAACAGACTTCGTAATTAATTTATCTTTGACATTTACCTCTGTTTTGGCTTCTTCTCTTCCTGGTGTTGACAGTCCACGGCTTCGTTCTTCCAAGACCACAGCGTATCTCTCGGCCGGCTCATCGGAATAAGGCCGGGCGACAAGACGTGGTTGTACCTCCCGACGGACGAGAATGCGTGTGTATCGGTAAATTCCGCAAGCTTAGATACGAGGAAAACGAAGAGCGCTGAAATATCAGGCCGAATCTGCATTCCGATTCTGATCGGTATCATGTTGAAGATGATCAGAAGTCGAAGAAATTCGAGAAGTTGAAGAAGGAAACGAGATGAAGTGAAATTGGGCGAACGTAATTACAAATTGCGTCAGTTGTTTTTCTTTGCGAGTTTTGGAACATTGTTGATGGAAGACGTGGTTATCGGAAATCTGGAACTTCGTTGCTTGCTTCTGAATTCAATTTATCTGAAGAATCTGAATCAAAATTGAAAAGCGTTTAA

mRNA sequence

ATGGTTTCAGAGGATCGAGACATGATCAATGGTTGGCCACTGGGACTCGAGGTTATGAACACCAGAGTTCGAATGGCAGACTCACAGAGGTTACCGCCCACGGATCCCTTCCCTACTTCGCACATTCCTTCAAGGAGTTTCTCCTCTTTGTCTTCCTCTGAACTCGACACCATGTCCACGGCTTCGTTCTTCCAAGACCACAGCGTATCTCTCGGCCGGCTCATCGGAATAAGGCCGGGCGACAAGACGTGGTTGTACCTCCCGACGGACGAGAATGCGTGTGTATCGGTAAATTCCGCAAGCTTAGATACGAGGAAAACGAAGAGCGCTGAAATATCAGGCCGAATCTGCATTCCGATTCTGATCGTTGTTTTTCTTTGCGAGTTTTGGAACATTGTTGATGGAAGACGTGGTTATCGGAAATCTGGAACTTCGTTGCTTGCTTCTGAATTCAATTTATCTGAAGAATCTGAATCAAAATTGAAAAGCGTTTAA

Coding sequence (CDS)

ATGGTTTCAGAGGATCGAGACATGATCAATGGTTGGCCACTGGGACTCGAGGTTATGAACACCAGAGTTCGAATGGCAGACTCACAGAGGTTACCGCCCACGGATCCCTTCCCTACTTCGCACATTCCTTCAAGGAGTTTCTCCTCTTTGTCTTCCTCTGAACTCGACACCATGTCCACGGCTTCGTTCTTCCAAGACCACAGCGTATCTCTCGGCCGGCTCATCGGAATAAGGCCGGGCGACAAGACGTGGTTGTACCTCCCGACGGACGAGAATGCGTGTGTATCGGTAAATTCCGCAAGCTTAGATACGAGGAAAACGAAGAGCGCTGAAATATCAGGCCGAATCTGCATTCCGATTCTGATCGTTGTTTTTCTTTGCGAGTTTTGGAACATTGTTGATGGAAGACGTGGTTATCGGAAATCTGGAACTTCGTTGCTTGCTTCTGAATTCAATTTATCTGAAGAATCTGAATCAAAATTGAAAAGCGTTTAA

Protein sequence

MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMSTASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPILIVVFLCEFWNIVDGRRGYRKSGTSLLASEFNLSEESESKLKSV

Homology

[Close]

BLAST of Csor.00g114950 vs. NCBI nr
Match: KAG6594587.1 (hypothetical protein SDJN03_11140, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 323 bits (828), Expect = 2.63e-111
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST 60
           MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST
Sbjct: 1   MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST 60

Query: 61  ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI 120
           ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI
Sbjct: 61  ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI 120

Query: 121 LIVVFLCEFWNIVDGRRGYRKSGTSLLASEFNLSEESESKLKSV 164
           LIVVFLCEFWNIVDGRRGYRKSGTSLLASEFNLSEESESKLKSV
Sbjct: 121 LIVVFLCEFWNIVDGRRGYRKSGTSLLASEFNLSEESESKLKSV 164

[Close]

BLAST of Csor.00g114950 vs. NCBI nr
Match: XP_022926836.1 (uncharacterized protein LOC111433832 [Cucurbita moschata])

HSP 1 Score: 244 bits (623), Expect = 1.15e-79
Identity = 126/140 (90.00%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 1   MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST 60
           MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST
Sbjct: 55  MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST 114

Query: 61  ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI 120
           ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI
Sbjct: 115 ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI 174

Query: 121 LIVVFLCEFWNIVDGRRGYR 140
           LI + L     ++  RR  R
Sbjct: 175 LIGIML----KMIRSRRNSR 190

[Close]

BLAST of Csor.00g114950 vs. NCBI nr
Match: KAG7026557.1 (hypothetical protein SDJN02_10559 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244 bits (623), Expect = 1.15e-79
Identity = 126/140 (90.00%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 1   MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST 60
           MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST
Sbjct: 55  MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST 114

Query: 61  ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI 120
           ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI
Sbjct: 115 ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI 174

Query: 121 LIVVFLCEFWNIVDGRRGYR 140
           LI + L     ++  RR  R
Sbjct: 175 LIGIML----KMIRSRRNSR 190

[Close]

BLAST of Csor.00g114950 vs. NCBI nr
Match: XP_023517383.1 (uncharacterized protein LOC111781162 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238 bits (608), Expect = 2.20e-77
Identity = 122/140 (87.14%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST 60
           MVSED+D++NGWPLGLEVMNTRVRMADSQRLPPTDPFPT HIPSRSFSSLSSSELDTMST
Sbjct: 55  MVSEDQDILNGWPLGLEVMNTRVRMADSQRLPPTDPFPTPHIPSRSFSSLSSSELDTMST 114

Query: 61  ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI 120
           ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI
Sbjct: 115 ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI 174

Query: 121 LIVVFLCEFWNIVDGRRGYR 140
           LI + L     ++  RR  R
Sbjct: 175 LIGIML----KMIRSRRNSR 190

[Close]

BLAST of Csor.00g114950 vs. NCBI nr
Match: XP_023003853.1 (uncharacterized protein LOC111497316 [Cucurbita maxima])

HSP 1 Score: 237 bits (605), Expect = 6.31e-77
Identity = 121/140 (86.43%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST 60
           MVSED+D++NGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSEL+TMST
Sbjct: 55  MVSEDQDILNGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELNTMST 114

Query: 61  ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI 120
           ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVS NSASLDTRKTKSAEISGRICIPI
Sbjct: 115 ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSANSASLDTRKTKSAEISGRICIPI 174

Query: 121 LIVVFLCEFWNIVDGRRGYR 140
           LI + L     ++  RR  R
Sbjct: 175 LIGIML----KMIKSRRNSR 190

[Close]

BLAST of Csor.00g114950 vs. ExPASy TrEMBL
Match: A0A6J1EFZ8 (uncharacterized protein LOC111433832 OS=Cucurbita moschata OX=3662 GN=LOC111433832 PE=4 SV=1)

HSP 1 Score: 244 bits (623), Expect = 5.56e-80
Identity = 126/140 (90.00%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 1   MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST 60
           MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST
Sbjct: 55  MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST 114

Query: 61  ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI 120
           ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI
Sbjct: 115 ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI 174

Query: 121 LIVVFLCEFWNIVDGRRGYR 140
           LI + L     ++  RR  R
Sbjct: 175 LIGIML----KMIRSRRNSR 190

[Close]

BLAST of Csor.00g114950 vs. ExPASy TrEMBL
Match: A0A6J1KXT6 (uncharacterized protein LOC111497316 OS=Cucurbita maxima OX=3661 GN=LOC111497316 PE=4 SV=1)

HSP 1 Score: 237 bits (605), Expect = 3.05e-77
Identity = 121/140 (86.43%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST 60
           MVSED+D++NGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSEL+TMST
Sbjct: 55  MVSEDQDILNGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELNTMST 114

Query: 61  ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSASLDTRKTKSAEISGRICIPI 120
           ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVS NSASLDTRKTKSAEISGRICIPI
Sbjct: 115 ASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSANSASLDTRKTKSAEISGRICIPI 174

Query: 121 LIVVFLCEFWNIVDGRRGYR 140
           LI + L     ++  RR  R
Sbjct: 175 LIGIML----KMIKSRRNSR 190

[Close]

BLAST of Csor.00g114950 vs. ExPASy TrEMBL
Match: A0A6J1CL22 (uncharacterized protein LOC111012415 OS=Momordica charantia OX=3673 GN=LOC111012415 PE=4 SV=1)

HSP 1 Score: 161 bits (408), Expect = 4.67e-48
Identity = 89/138 (64.49%), Postives = 101/138 (73.19%), Query Frame = 0


Query: 1   MVSEDRDMINGWPLGLEVMNTRVRMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMST 60
           MV+EDR+++ GWPLGLEVMNTR+RM   +RLP        HIPS SFSSLSSSELDT+ST
Sbjct: 1   MVTEDREILGGWPLGLEVMNTRLRMTQPERLPT---IANLHIPSMSFSSLSSSELDTVST 60

Query: 61  ASFFQDHSVSLGRLIGIRPGDKTWLYLPT--DENACVSVNSASLDTRKTKSAEISGRICI 120
           ASFFQDHSVSLGRLIGIRP DKTWL  PT  D +  VSVN+  LD  KT   EISGRICI
Sbjct: 61  ASFFQDHSVSLGRLIGIRPADKTWLCFPTATDGSESVSVNAGGLDVSKTNGDEISGRICI 120

Query: 121 PILIVVFLCEFWNIVDGR 136
           PI+I + L    N  + R
Sbjct: 121 PIVIGIVLKMIRNWRNSR 135

[Close]

BLAST of Csor.00g114950 vs. ExPASy TrEMBL
Match: A0A1S3B0C9 (uncharacterized protein LOC103484500 OS=Cucumis melo OX=3656 GN=LOC103484500 PE=4 SV=1)

HSP 1 Score: 150 bits (379), Expect = 1.77e-43
Identity = 87/128 (67.97%), Postives = 101/128 (78.91%), Query Frame = 0


Query: 6   RDMINGWPLGLEVMNTRVR-MADS--QRLPPTDPFPTSHIPSRSFSSLSSSELDTMSTAS 65
           +D++NGWPLGL+VMNT +R MADS   RLP TDP P   IPS SFSSLSSSELDT+STAS
Sbjct: 11  QDLLNGWPLGLQVMNTTLRLMADSGTHRLPSTDPSPDVLIPSFSFSSLSSSELDTLSTAS 70

Query: 66  FFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSAS-LDTRKTKSAE--ISGRI-CI 125
           FFQDHSVSLGRLIG++P DK WLY+PT+E   V+ NSA  +D  KTK+ E  ISGRI CI
Sbjct: 71  FFQDHSVSLGRLIGLKPADKKWLYIPTEEKKSVTANSAGRVDDSKTKAGEHEISGRIICI 130

[Close]

BLAST of Csor.00g114950 vs. ExPASy TrEMBL
Match: A0A0A0KNE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518080 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 7.83e-43
Identity = 89/148 (60.14%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 3   SEDRDMINGWPLGLEVMNTRVR-MADS--QRLPPTDPFPTSHIPSRSFSSLSSSELDTMS 62
           S+ +D++NGWPLGL+VMN+ +R MADS    LP   P P   IPS SFSSLSSSELDT+S
Sbjct: 5   SDHQDLLNGWPLGLQVMNSTLRLMADSGTHTLPSAQPSPNLLIPSFSFSSLSSSELDTLS 64

Query: 63  TASFFQDHSVSLGRLIGIRPGDKTWLYLPTDENACVSVNSAS--LDTRKTKSAE----IS 122
           TASFFQD SVSLGRLIG++P DKTWLY PT+E   VS NSA   +D  KTK+A     IS
Sbjct: 65  TASFFQDPSVSLGRLIGLKPADKTWLYFPTEEKKSVSANSAGRRVDDSKTKNAGEHEIIS 124

Query: 123 GRICIPILIVVFLCEFWNIVDGRRGYRK 141
           GRICIPI+I V L     ++  RR  RK
Sbjct: 125 GRICIPIVIGVIL----KMIRSRRNSRK 148

[Close]

BLAST of Csor.00g114950 vs. TAIR 10
Match: AT5G02440.1 (unknown protein; Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 5.0e-05
Identity = 30/74 (40.54%), Postives = 37/74 (50.00%), Query Frame = 0


Query: 11 GWPLGLEVMNTRV-------RMADSQRLPPTDPFPTSHIPSRSFSSLSSSELDTMSTASF 70
          GWPLGL  +N R+                       S + S S SS SSS+LD+ S  SF
Sbjct: 7  GWPLGLRPVNARIGGLTRGTHHHHHHEQVSAGSISFSSLLSPSPSSQSSSDLDSQSMGSF 66

Query: 71 FQDHSVSLGRLIGI 78
          F+D S +LG LIGI
Sbjct: 67 FRDRSYTLGNLIGI 80

[Close]

BLAST of Csor.00g114950 vs. TAIR 10
Match: AT3G17950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.9e-04
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 41 HIPSR-SFSSLSSSELDTMSTASFFQDHSVSLGRLIG 77
          H+PS  + SS+SSS+LDT ST SFF D S++LG L+G
Sbjct: 5  HVPSSPTISSVSSSDLDTESTGSFFHDRSITLGTLMG 41

The following BLAST results are available for this feature:

BLAST of Csor.00g114950 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g114950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594587.1	2.63e-111	100.00	hypothetical protein SDJN03_11140, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022926836.1	1.15e-79	90.00	uncharacterized protein LOC111433832 [Cucurbita moschata]	[more]
KAG7026557.1	1.15e-79	90.00	hypothetical protein SDJN02_10559 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023517383.1	2.20e-77	87.14	uncharacterized protein LOC111781162 [Cucurbita pepo subsp. pepo]	[more]
XP_023003853.1	6.31e-77	86.43	uncharacterized protein LOC111497316 [Cucurbita maxima]	[more]

BLAST of Csor.00g114950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EFZ8	5.56e-80	90.00	uncharacterized protein LOC111433832 OS=Cucurbita moschata OX=3662 GN=LOC1114338...	[more]
A0A6J1KXT6	3.05e-77	86.43	uncharacterized protein LOC111497316 OS=Cucurbita maxima OX=3661 GN=LOC111497316...	[more]
A0A6J1CL22	4.67e-48	64.49	uncharacterized protein LOC111012415 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A1S3B0C9	1.77e-43	67.97	uncharacterized protein LOC103484500 OS=Cucumis melo OX=3656 GN=LOC103484500 PE=...	[more]
A0A0A0KNE6	7.83e-43	60.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518080 PE=4 SV=1	[more]

BLAST of Csor.00g114950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02440.1	5.0e-05	40.54	unknown protein; Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bac...	[more]
AT3G17950.1	1.9e-04	59.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33544:SF14	PROTEIN, PUTATIVE-RELATED	coord: 1..123
IPR040344	Uncharacterized protein At3g17950-like	PANTHER	PTHR33544	FAMILY NOT NAMED	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g114950.m01	Csor.00g114950.m01	mRNA