Csor.00g114260 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g114260
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Patatin
Location	Csor_Chr07: 1407934 .. 1408302 (+)
RNA-Seq Expression	Csor.00g114260
Synteny	Csor.00g114260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGAAGGCATCAGCAGAAGCAGTAGCTTCTCTGAGGAAATGGGTGCTGTTGCTCCACTTGCAATCGGCACGCGAGGCACTATGGGGTCGCTGGTTATGAAGGAGATTGAGTACTTCACCAAGCTAGAGCTCGAACGCCATGGCGGCTCTCAGCGGTTAAGTGGAGATGCTTCCAGGAGAAGCGATTCGAAGACAAGCTTTTGGCTTTTGTCGTTGAGTTGGAAGTGGAAGAAGAGAAGAACCAACAATGGGATTCTCCCCAACATTTGCTCTGCTGTCGAATTGTCAAAAAGCAATCGGTTTAATGGGATTCCTGGTTTTGGTTACAGGATTCTCAAAAACGATGTCACCCACTTTCCCATTTGA

mRNA sequence

ATGTATGAAGGCATCAGCAGAAGCAGTAGCTTCTCTGAGGAAATGGGTGCTGTTGCTCCACTTGCAATCGGCACGCGAGGCACTATGGGGTCGCTGGTTATGAAGGAGATTGAGTACTTCACCAAGCTAGAGCTCGAACGCCATGGCGGCTCTCAGCGGTTAAGTGGAGATGCTTCCAGGAGAAGCGATTCGAAGACAAGCTTTTGGCTTTTGTCGTTGAGTTGGAAGTGGAAGAAGAGAAGAACCAACAATGGGATTCTCCCCAACATTTGCTCTGCTGTCGAATTGTCAAAAAGCAATCGGTTTAATGGGATTCCTGGTTTTGGTTACAGGATTCTCAAAAACGATGTCACCCACTTTCCCATTTGA

Coding sequence (CDS)

ATGTATGAAGGCATCAGCAGAAGCAGTAGCTTCTCTGAGGAAATGGGTGCTGTTGCTCCACTTGCAATCGGCACGCGAGGCACTATGGGGTCGCTGGTTATGAAGGAGATTGAGTACTTCACCAAGCTAGAGCTCGAACGCCATGGCGGCTCTCAGCGGTTAAGTGGAGATGCTTCCAGGAGAAGCGATTCGAAGACAAGCTTTTGGCTTTTGTCGTTGAGTTGGAAGTGGAAGAAGAGAAGAACCAACAATGGGATTCTCCCCAACATTTGCTCTGCTGTCGAATTGTCAAAAAGCAATCGGTTTAATGGGATTCCTGGTTTTGGTTACAGGATTCTCAAAAACGATGTCACCCACTTTCCCATTTGA

Protein sequence

MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASRRSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKNDVTHFPI

Homology

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BLAST of Csor.00g114260 vs. NCBI nr
Match: KAG6594656.1 (hypothetical protein SDJN03_11209, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 249 bits (636), Expect = 2.16e-83
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60
           MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR
Sbjct: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60

Query: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKNDVTHF 120
           RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKNDVTHF
Sbjct: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKNDVTHF 120

Query: 121 PI 122
           PI
Sbjct: 121 PI 122

[Close]

BLAST of Csor.00g114260 vs. NCBI nr
Match: XP_022926407.1 (uncharacterized protein LOC111433571 [Cucurbita moschata] >KAG7026623.1 hypothetical protein SDJN02_10625, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247 bits (631), Expect = 1.25e-82
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60
           MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR
Sbjct: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60

Query: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKNDVTHF 120
           RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILK+DVTHF
Sbjct: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDVTHF 120

Query: 121 PI 122
           PI
Sbjct: 121 PI 122

[Close]

BLAST of Csor.00g114260 vs. NCBI nr
Match: XP_023003961.1 (uncharacterized protein LOC111497407 [Cucurbita maxima])

HSP 1 Score: 246 bits (627), Expect = 5.09e-82
Identity = 119/122 (97.54%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60
           MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR
Sbjct: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60

Query: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKNDVTHF 120
           RSDS+TSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILK+D+THF
Sbjct: 61  RSDSRTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDITHF 120

Query: 121 PI 122
           PI
Sbjct: 121 PI 122

[Close]

BLAST of Csor.00g114260 vs. NCBI nr
Match: XP_023518155.1 (uncharacterized protein LOC111781699 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245 bits (626), Expect = 7.24e-82
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60
           MYEGISRSSSF EEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR
Sbjct: 1   MYEGISRSSSFCEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60

Query: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKNDVTHF 120
           RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILK+DVTHF
Sbjct: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDVTHF 120

Query: 121 PI 122
           PI
Sbjct: 121 PI 122

[Close]

BLAST of Csor.00g114260 vs. NCBI nr
Match: XP_038882225.1 (uncharacterized protein LOC120073447 [Benincasa hispida])

HSP 1 Score: 209 bits (533), Expect = 1.00e-67
Identity = 103/122 (84.43%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60
           MY+G+SRS SFSE+MG VAPLAIGTRGT+GSLVMKEIEYFTKLELERHGGS  +SGDA R
Sbjct: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDALR 60

Query: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKNDVTHF 120
           RSDSK SFWLLSL+WKWKKR+ NNGILPNICSAVE SKSNRFNGIPGFGYRILK+D   F
Sbjct: 61  RSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDD---F 119

Query: 121 PI 122
           PI
Sbjct: 121 PI 119

[Close]

BLAST of Csor.00g114260 vs. ExPASy TrEMBL
Match: A0A6J1EEE9 (uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC111433571 PE=4 SV=1)

HSP 1 Score: 247 bits (631), Expect = 6.05e-83
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60
           MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR
Sbjct: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60

Query: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKNDVTHF 120
           RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILK+DVTHF
Sbjct: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDVTHF 120

Query: 121 PI 122
           PI
Sbjct: 121 PI 122

[Close]

BLAST of Csor.00g114260 vs. ExPASy TrEMBL
Match: A0A6J1KQQ8 (uncharacterized protein LOC111497407 OS=Cucurbita maxima OX=3661 GN=LOC111497407 PE=4 SV=1)

HSP 1 Score: 246 bits (627), Expect = 2.47e-82
Identity = 119/122 (97.54%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60
           MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR
Sbjct: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60

Query: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKNDVTHF 120
           RSDS+TSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILK+D+THF
Sbjct: 61  RSDSRTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDITHF 120

Query: 121 PI 122
           PI
Sbjct: 121 PI 122

[Close]

BLAST of Csor.00g114260 vs. ExPASy TrEMBL
Match: A0A6J1CKN5 (uncharacterized protein LOC111012477 OS=Momordica charantia OX=3673 GN=LOC111012477 PE=4 SV=1)

HSP 1 Score: 207 bits (528), Expect = 3.31e-67
Identity = 102/124 (82.26%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60
           MY+GIS S SFSE+MG+VAPLAIGTRGT+GSLVMKEIEYFTKLELERHGGSQR++ +ASR
Sbjct: 1   MYKGISTSRSFSEKMGSVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSQRITAEASR 60

Query: 61  RSDSKTSFWLLSLSWKWKKRRTN--NGILPNICSAVELSKSNRFNGIPGFGYRILKNDVT 120
           R DSK SFWLLS +WKWKKRR+   NGILPNICSAVELSKSNRFNGIPGFGYRILK DV 
Sbjct: 61  RGDSKPSFWLLSSTWKWKKRRSGSTNGILPNICSAVELSKSNRFNGIPGFGYRILKEDVN 120

Query: 121 HFPI 122
           +F I
Sbjct: 121 YFTI 124

[Close]

BLAST of Csor.00g114260 vs. ExPASy TrEMBL
Match: A0A6J1IJL8 (uncharacterized protein LOC111477686 OS=Cucurbita maxima OX=3661 GN=LOC111477686 PE=4 SV=1)

HSP 1 Score: 203 bits (517), Expect = 1.34e-65
Identity = 99/122 (81.15%), Postives = 110/122 (90.16%), Query Frame = 0


Query: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60
           MY+G+SRS SFSE+M  +APLAIGTRGT+GSLVMKEIEYFTK E+ERHG SQR+SGDASR
Sbjct: 1   MYKGMSRSRSFSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60

Query: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKNDVTHF 120
           RSD K SFWL+SL+WKWKKR+ NNGILPNICSAVELSKSNRFNGIPGF YRILK+D   F
Sbjct: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHD---F 119

Query: 121 PI 122
           PI
Sbjct: 121 PI 119

[Close]

BLAST of Csor.00g114260 vs. ExPASy TrEMBL
Match: A0A5D3CRM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006580 PE=4 SV=1)

HSP 1 Score: 194 bits (494), Expect = 4.44e-62
Identity = 99/123 (80.49%), Postives = 108/123 (87.80%), Query Frame = 0


Query: 1   MYEGISRSSSFSEEMG-AVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDAS 60
           MY+G+SRS SFSE+MG AVAPLAIGTRGT+GSLVMKEIEYFT LELERHG S  + G+A 
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60

Query: 61  RRSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKNDVTH 120
           RRSDSK SFWLLSL+WKWKKR+ NNGILPNI SAVE SKSNRFNGIPGFGYRILK+D   
Sbjct: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDD--- 120

Query: 121 FPI 122
           FPI
Sbjct: 121 FPI 120

[Close]

BLAST of Csor.00g114260 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 9.4e-17
Identity = 49/109 (44.95%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 19  APLAIGTRGTMGSLVMKEIEYFTKLEL------ERHGGSQRLSGDASR--RSDSKTSFWL 78
           AP+AIGTRGT+GSLV KEI+YF            R G S+       +  RS S+   W 
Sbjct: 3   APIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSWF 62

Query: 79  LSLSWKWKKRRTNNG---ILPNICSAVELSKSNRFNGIPGFGYRILKND 117
               W+ KKR+T  G     P++CSAVE+S  NR   +PGF YRILK+D
Sbjct: 63  SKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENR---VPGFNYRILKSD 108

The following BLAST results are available for this feature:

BLAST of Csor.00g114260 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g114260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594656.1	2.16e-83	100.00	hypothetical protein SDJN03_11209, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022926407.1	1.25e-82	99.18	uncharacterized protein LOC111433571 [Cucurbita moschata] >KAG7026623.1 hypothet...	[more]
XP_023003961.1	5.09e-82	97.54	uncharacterized protein LOC111497407 [Cucurbita maxima]	[more]
XP_023518155.1	7.24e-82	98.36	uncharacterized protein LOC111781699 [Cucurbita pepo subsp. pepo]	[more]
XP_038882225.1	1.00e-67	84.43	uncharacterized protein LOC120073447 [Benincasa hispida]	[more]

BLAST of Csor.00g114260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEE9	6.05e-83	99.18	uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC1114335...	[more]
A0A6J1KQQ8	2.47e-82	97.54	uncharacterized protein LOC111497407 OS=Cucurbita maxima OX=3661 GN=LOC111497407...	[more]
A0A6J1CKN5	3.31e-67	82.26	uncharacterized protein LOC111012477 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1IJL8	1.34e-65	81.15	uncharacterized protein LOC111477686 OS=Cucurbita maxima OX=3661 GN=LOC111477686...	[more]
A0A5D3CRM5	4.44e-62	80.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Csor.00g114260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21780.1	9.4e-17	44.95	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35131	EXPRESSED PROTEIN	coord: 7..120
None	No IPR available	PANTHER	PTHR35131:SF1	EXPRESSED PROTEIN	coord: 7..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g114260.m01	Csor.00g114260.m01	mRNA