Csor.00g112510 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g112510
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	AP complex subunit sigma
Location	Csor_Chr07: 2175556 .. 2176726 (-)
RNA-Seq Expression	Csor.00g112510
Synteny	Csor.00g112510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACGGGGGGTGATAGTGATGAACACACAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGGTCCCTTTCTGGGAGTTTCGTGCCGAATTTTCATATCCTTCTTGCGGTATTTCTATTTTAATGATCTGTCTGTTGATGAATTCTTGAATTTAGCCCGTTGAGAAGCAGCTGGAGCTCATTCGTAGCATCTATGGAGGTTCGCAGTTCTATCTTTCGATTATGCTTTCGAAGTACTGAAATGTTCGGAACTAACCTATATTTCAATTTTGATTTCGTTTTGTTTCCCGGTTTGTACAGTACTCTGCAGTCGAGCTGAGAACGTCAGCAATTTCGTGGAAGCTGAGTCCCATCTTCGGTCCGGTAATTTTTCGTTTATCGCATAATTCCTTGTCCAACAATTTCCTTCTGGTACTGTATGTTGGATGTATTTCATTATGATATTCTTGGATAAGCTAAATATTTGTCAAAAATGAATGTTGGTTGGCCTTGTTCAGCCCGATTATTTCAAACCAAGTTTGTTCTTCAATTGGTCCAGTGTACTCTTTGATGACATAACTATTGTTTGGTTGGTAGTAGTACATGACTCTGTCAATACATTCTTCTGAACATCTAAATTAGGAATAGTACAAATAAAATTTTGATGCAGATGCATACTATTTTGGATGAAATCATTTCCGGTGGCCAAGTGCTAGAGACTTGTTCTTCTGAAGTATTCAAGTGTATTAGTGCTTAAAACACACGCAGCAATCGACAGTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTAGTGAGGGAGAGAAAAAGCACTTGGACTCATGTTGATGTCCTTGTACTGGCAGTGCAGGTTAGAAACAGCGTCAAATTCTATCAACTTCGTATCCACAACAGTTTCGGGTTGGTGGGGTTGAGTTTGCTGTTTTAAGCGAGCTTGTTAGACAATGAAGTACGCCATTTGGATTGCCTTGCCTTCAAATTTTCTCTTGGTCTGTTATTCTGTGCAAACCAATCACACCGACGGCATATTGGTTTATGAGAAGTTAATCACAATCTCCGCAGTCCTTTTTATTGGTGTCATGTGTTTTTGATATGCAGTGCATGGAAACGGATATTTGCTTCAATGTCAGGCTTAAAGGGGTGGTAAACCGTACTCTTATAAGAGCGTAG

mRNA sequence

ATGATACGGGGGGTGATAGTGATGAACACACAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGCCCGTTGAGAAGCAGCTGGAGCTCATTCGTAGCATCTATGGAGTACTCTGCAGTCGAGCTGAGAACGTCAGCAATTTCGTGGAAGCTGAGTCCCATCTTCGGTCCGTGCAGGTTAGAAACAGCGTCAAATTCTATCAACTTCGTATCCACAACAGTTTCGGGTTGTGCATGGAAACGGATATTTGCTTCAATGTCAGGCTTAAAGGGGTGGTAAACCGTACTCTTATAAGAGCGTAG

Coding sequence (CDS)

ATGATACGGGGGGTGATAGTGATGAACACACAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGCCCGTTGAGAAGCAGCTGGAGCTCATTCGTAGCATCTATGGAGTACTCTGCAGTCGAGCTGAGAACGTCAGCAATTTCGTGGAAGCTGAGTCCCATCTTCGGTCCGTGCAGGTTAGAAACAGCGTCAAATTCTATCAACTTCGTATCCACAACAGTTTCGGGTTGTGCATGGAAACGGATATTTGCTTCAATGTCAGGCTTAAAGGGGTGGTAAACCGTACTCTTATAAGAGCGTAG

Protein sequence

MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAESHLRSVQVRNSVKFYQLRIHNSFGLCMETDICFNVRLKGVVNRTLIRA

Homology

[Close]

BLAST of Csor.00g112510 vs. ExPASy Swiss-Prot
Match: Q8VZ37 (AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-16
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAES 55
          MI+ V++MNTQGKPR AKFYD+ PVEKQ ELIR ++ VLCSR ENVSNF+E ES
Sbjct: 1  MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIES 54

[Close]

BLAST of Csor.00g112510 vs. ExPASy Swiss-Prot
Match: Q553S2 (AP-3 complex subunit sigma OS=Dictyostelium discoideum OX=44689 GN=ap3s1 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.3e-05
Identity = 20/51 (39.22%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVE 52
          MI+ ++++N  GKPR  KFY+    EKQ ++IR ++ ++  R E   NF+E
Sbjct: 1  MIKSILIINNHGKPRLIKFYEHYSEEKQQQIIRELFLLVSKRTERSCNFLE 51

[Close]

BLAST of Csor.00g112510 vs. ExPASy Swiss-Prot
Match: Q1JQA3 (AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-05
Identity = 20/54 (37.04%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAES 55
          MI+ ++V N  GKPR  +FY   P E Q +++R  + ++  R +N+ NF+E  S
Sbjct: 1  MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGS 54

[Close]

BLAST of Csor.00g112510 vs. ExPASy Swiss-Prot
Match: P59780 (AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-05
Identity = 20/54 (37.04%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAES 55
          MI+ ++V N  GKPR  +FY   P E Q +++R  + ++  R +N+ NF+E  S
Sbjct: 1  MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGS 54

[Close]

BLAST of Csor.00g112510 vs. ExPASy Swiss-Prot
Match: Q8BSZ2 (AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-05
Identity = 20/54 (37.04%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAES 55
          MI+ ++V N  GKPR  +FY   P E Q +++R  + ++  R +N+ NF+E  S
Sbjct: 1  MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGS 54

[Close]

BLAST of Csor.00g112510 vs. NCBI nr
Match: KAG6594830.1 (AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206 bits (525), Expect = 3.94e-67
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAESHLRSVQ 60
           MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAESHLRSVQ
Sbjct: 1   MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAESHLRSVQ 60

Query: 61  VRNSVKFYQLRIHNSFGLCMETDICFNVRLKGVVNRTLIRA 101
           VRNSVKFYQLRIHNSFGLCMETDICFNVRLKGVVNRTLIRA
Sbjct: 61  VRNSVKFYQLRIHNSFGLCMETDICFNVRLKGVVNRTLIRA 101

[Close]

BLAST of Csor.00g112510 vs. NCBI nr
Match: KAG7026793.1 (AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120 bits (301), Expect = 2.30e-33
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAESHLRSV 59
          MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNF+EAESHLRSV
Sbjct: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAESHLRSV 59

[Close]

BLAST of Csor.00g112510 vs. NCBI nr
Match: XP_023003840.1 (AP-3 complex subunit sigma-like [Cucurbita maxima])

HSP 1 Score: 108 bits (271), Expect = 1.55e-28
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAES 54
          MIR VIVMNTQGKPRFAKFYDFQP+EKQLELIRS+YGVLCSRAENVSNFVEAES
Sbjct: 1  MIRAVIVMNTQGKPRFAKFYDFQPIEKQLELIRSVYGVLCSRAENVSNFVEAES 54

[Close]

BLAST of Csor.00g112510 vs. NCBI nr
Match: KAA0058373.1 (AP-3 complex subunit sigma [Cucumis melo var. makuwa] >TYK23419.1 AP-3 complex subunit sigma [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (261), Expect = 1.66e-26
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAES 54
          MIR VIVMNT+GKPRFAKFYDFQP+EKQ ELIRS+YGVLCSRAEN+SNFVEAES
Sbjct: 1  MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAES 54

[Close]

BLAST of Csor.00g112510 vs. NCBI nr
Match: XP_038893159.1 (AP-3 complex subunit sigma [Benincasa hispida] >XP_038893161.1 AP-3 complex subunit sigma [Benincasa hispida] >XP_038893162.1 AP-3 complex subunit sigma [Benincasa hispida] >XP_038893163.1 AP-3 complex subunit sigma [Benincasa hispida])

HSP 1 Score: 105 bits (261), Expect = 4.10e-26
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAES 54
          MIR VIVMNTQGKPRFAKFY+FQPVEKQ ELIRS+YGVLCSRAENVSNFVEAES
Sbjct: 1  MIRAVIVMNTQGKPRFAKFYNFQPVEKQQELIRSVYGVLCSRAENVSNFVEAES 54

[Close]

BLAST of Csor.00g112510 vs. ExPASy TrEMBL
Match: A0A6J1KSX1 (AP-3 complex subunit sigma-like OS=Cucurbita maxima OX=3661 GN=LOC111497304 PE=3 SV=1)

HSP 1 Score: 108 bits (271), Expect = 7.49e-29
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAES 54
          MIR VIVMNTQGKPRFAKFYDFQP+EKQLELIRS+YGVLCSRAENVSNFVEAES
Sbjct: 1  MIRAVIVMNTQGKPRFAKFYDFQPIEKQLELIRSVYGVLCSRAENVSNFVEAES 54

[Close]

BLAST of Csor.00g112510 vs. ExPASy TrEMBL
Match: A0A5A7UR76 (AP-3 complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1359G00170 PE=3 SV=1)

HSP 1 Score: 105 bits (261), Expect = 8.03e-27
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAES 54
          MIR VIVMNT+GKPRFAKFYDFQP+EKQ ELIRS+YGVLCSRAEN+SNFVEAES
Sbjct: 1  MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAES 54

[Close]

BLAST of Csor.00g112510 vs. ExPASy TrEMBL
Match: A0A1S3BT37 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1)

HSP 1 Score: 105 bits (261), Expect = 1.99e-26
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAES 54
          MIR VIVMNT+GKPRFAKFYDFQP+EKQ ELIRS+YGVLCSRAEN+SNFVEAES
Sbjct: 1  MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAES 54

[Close]

BLAST of Csor.00g112510 vs. ExPASy TrEMBL
Match: A0A6J1IUE1 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111478508 PE=3 SV=1)

HSP 1 Score: 105 bits (261), Expect = 1.99e-26
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAES 54
          MIR VIVMNTQGKPRFAKFYDFQPVEKQ ELIRS++GVLCSRAENVSNFVEAES
Sbjct: 1  MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAES 54

[Close]

BLAST of Csor.00g112510 vs. ExPASy TrEMBL
Match: A0A6J1GFL2 (AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111453507 PE=3 SV=1)

HSP 1 Score: 103 bits (258), Expect = 5.64e-26
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAES 54
          MIR VIVMNTQGKPRFAKFYDFQPVEKQ ELIRS++GVLCSRAEN+SNFVEAES
Sbjct: 1  MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENLSNFVEAES 54

[Close]

BLAST of Csor.00g112510 vs. TAIR 10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-17
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFVEAES 55
          MI+ V++MNTQGKPR AKFYD+ PVEKQ ELIR ++ VLCSR ENVSNF+E ES
Sbjct: 1  MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIES 54

The following BLAST results are available for this feature:

BLAST of Csor.00g112510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZ37	2.9e-16	72.22	AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=...	[more]
Q553S2	1.3e-05	39.22	AP-3 complex subunit sigma OS=Dictyostelium discoideum OX=44689 GN=ap3s1 PE=3 SV...	[more]
Q1JQA3	3.0e-05	37.04	AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1	[more]
P59780	3.0e-05	37.04	AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1	[more]
Q8BSZ2	3.0e-05	37.04	AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1	[more]

BLAST of Csor.00g112510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594830.1	3.94e-67	100.00	AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7026793.1	2.30e-33	98.31	AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023003840.1	1.55e-28	94.44	AP-3 complex subunit sigma-like [Cucurbita maxima]	[more]
KAA0058373.1	1.66e-26	88.89	AP-3 complex subunit sigma [Cucumis melo var. makuwa] >TYK23419.1 AP-3 complex s...	[more]
XP_038893159.1	4.10e-26	92.59	AP-3 complex subunit sigma [Benincasa hispida] >XP_038893161.1 AP-3 complex subu...	[more]

BLAST of Csor.00g112510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KSX1	7.49e-29	94.44	AP-3 complex subunit sigma-like OS=Cucurbita maxima OX=3661 GN=LOC111497304 PE=3...	[more]
A0A5A7UR76	8.03e-27	88.89	AP-3 complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3BT37	1.99e-26	88.89	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1	[more]
A0A6J1IUE1	1.99e-26	92.59	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111478508 PE=3 SV=1	[more]
A0A6J1GFL2	5.64e-26	90.74	AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111453507 PE=3 SV=1	[more]

BLAST of Csor.00g112510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50860.1	2.0e-17	72.22	Clathrin adaptor complex small chain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 1..68 e-value: 6.0E-9 score: 36.0
None	No IPR available	GENE3D	3.30.450.60		coord: 1..76 e-value: 6.1E-14 score: 54.1
None	No IPR available	PANTHER	PTHR11753:SF42	AP COMPLEX SUBUNIT SIGMA	coord: 1..57
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 1..57
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g112510.m01	Csor.00g112510.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006896	Golgi to vacuole transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0030123	AP-3 adaptor complex
cellular_component	GO:0030659	cytoplasmic vesicle membrane