Csor.00g111050 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g111050
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S ribosomal protein L26
Location	Csor_Chr07: 2874314 .. 2874754 (-)
RNA-Seq Expression	Csor.00g111050
Synteny	Csor.00g111050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTACAACCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGCAAGGCTCATTTTTCTGCACCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGAATGACCTCCGGTCAAAGTACAATGTCCGATCCATGCCGATTAGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGCCGGGAAGGCAAGGTAGTGCAGGTGTACCGTAGAAAGTGGGTCATCCACATTGAGCGAATCACTCGTGAGAAGGTTAATGGATCCACTGTCAATGTCGGCATCAACCCCTCGAAGGTCGTGATTACAAAGCTCAGGCTGGACAAGGATCGCAAGTCACTTCTGGATCGTAAAGGTAAGGGCCGTGCTGCCGCTGACAAGGACAAGGGGACCAAGTTCTCCGCAGAGGATATCATGCAGAGCGTCGATTAA

mRNA sequence

ATGAAGTACAACCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGCAAGGCTCATTTTTCTGCACCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGAATGACCTCCGGTCAAAGTACAATGTCCGATCCATGCCGATTAGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGCCGGGAAGGCAAGGTAGTGCAGGTGTACCGTAGAAAGTGGGTCATCCACATTGAGCGAATCACTCGTGAGAAGGTTAATGGATCCACTGTCAATGTCGGCATCAACCCCTCGAAGGTCGTGATTACAAAGCTCAGGCTGGACAAGGATCGCAAGTCACTTCTGGATCGTAAAGGTAAGGGCCGTGCTGCCGCTGACAAGGACAAGGGGACCAAGTTCTCCGCAGAGGATATCATGCAGAGCGTCGATTAA

Coding sequence (CDS)

ATGAAGTACAACCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGCAAGGCTCATTTTTCTGCACCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGAATGACCTCCGGTCAAAGTACAATGTCCGATCCATGCCGATTAGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGCCGGGAAGGCAAGGTAGTGCAGGTGTACCGTAGAAAGTGGGTCATCCACATTGAGCGAATCACTCGTGAGAAGGTTAATGGATCCACTGTCAATGTCGGCATCAACCCCTCGAAGGTCGTGATTACAAAGCTCAGGCTGGACAAGGATCGCAAGTCACTTCTGGATCGTAAAGGTAAGGGCCGTGCTGCCGCTGACAAGGACAAGGGGACCAAGTTCTCCGCAGAGGATATCATGCAGAGCGTCGATTAA

Protein sequence

MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKGKGRAAADKDKGTKFSAEDIMQSVD

Homology

[Close]

BLAST of Csor.00g111050 vs. ExPASy Swiss-Prot
Match: P51414 (60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2)

HSP 1 Score: 251.5 bits (641), Expect = 5.7e-66
Identity = 128/146 (87.67%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLS DLR KYNVRSMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K KGRAAADK+KGTKF++ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of Csor.00g111050 vs. ExPASy Swiss-Prot
Match: Q9FJX2 (60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.3e-65
Identity = 125/146 (85.62%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S V+ITKLRLDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K  GRAAADK+KGTKFSAED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]

BLAST of Csor.00g111050 vs. ExPASy Swiss-Prot
Match: Q39411 (60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.6e-60
Identity = 118/145 (81.38%), Postives = 133/145 (91.72%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRR++RK HF+A SS RRV MS+PLS DLR KYNVRSMPIRKDDE Q+VRG
Sbjct: 1   MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+ P+KVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSV 146
           K KGRAAADKDKGTKF+A D+MQ+V
Sbjct: 121 KAKGRAAADKDKGTKFTAVDVMQNV 145

[Close]

BLAST of Csor.00g111050 vs. ExPASy Swiss-Prot
Match: P61257 (60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.1e-44
Identity = 97/142 (68.31%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLD 120
            YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT+L+LDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKGKGRAAADKDKGTKFSAEDI 142
           RK K R    K+KG K+  E I
Sbjct: 121 RKAKSRQVG-KEKG-KYKEETI 140

[Close]

BLAST of Csor.00g111050 vs. ExPASy Swiss-Prot
Match: P61254 (60S ribosomal protein L26 OS=Homo sapiens OX=9606 GN=RPL26 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.1e-44
Identity = 97/142 (68.31%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLD 120
            YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT+L+LDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKGKGRAAADKDKGTKFSAEDI 142
           RK K R    K+KG K+  E I
Sbjct: 121 RKAKSRQVG-KEKG-KYKEETI 140

[Close]

BLAST of Csor.00g111050 vs. NCBI nr
Match: XP_022963400.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023003724.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023517131.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo] >KAG6594976.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026934.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276 bits (707), Expect = 1.92e-93
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146
           KGKGRAAADKDKGTKFSAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146

[Close]

BLAST of Csor.00g111050 vs. NCBI nr
Match: XP_028772784.1 (60S ribosomal protein L26-1-like [Prosopis alba] >XP_028772785.1 60S ribosomal protein L26-1-like [Prosopis alba] >XP_028774307.1 60S ribosomal protein L26-1-like [Prosopis alba] >XP_028774308.1 60S ribosomal protein L26-1-like [Prosopis alba])

HSP 1 Score: 271 bits (692), Expect = 3.72e-91
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGR+GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGRDGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146
           K KGRAAADKDKGTKF+AEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csor.00g111050 vs. NCBI nr
Match: XP_022950899.1 (60S ribosomal protein L26-1 [Cucurbita moschata] >XP_022978626.1 60S ribosomal protein L26-1 [Cucurbita maxima] >XP_023543127.1 60S ribosomal protein L26-1 [Cucurbita pepo subsp. pepo] >KAG6604126.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034289.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271 bits (692), Expect = 3.72e-91
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLS DLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146
           KGKGRAA+DKDKGTKF+AEDIMQSVD
Sbjct: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csor.00g111050 vs. NCBI nr
Match: XP_004141862.1 (60S ribosomal protein L26-1 [Cucumis sativus] >XP_008440392.1 PREDICTED: 60S ribosomal protein L26-1 [Cucumis melo] >KAA0036413.1 Ribosomal protein L26/L24P, eukaryotic/archaeal [Cucumis melo var. makuwa] >KGN48613.1 hypothetical protein Csa_003604 [Cucumis sativus] >TYK12809.1 Ribosomal protein L26/L24P, eukaryotic/archaeal [Cucumis melo var. makuwa])

HSP 1 Score: 270 bits (691), Expect = 5.29e-91
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLS DLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146
           KGKGRAAADKDKGTKF+AEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csor.00g111050 vs. NCBI nr
Match: XP_038880918.1 (60S ribosomal protein L26-1 [Benincasa hispida])

HSP 1 Score: 270 bits (690), Expect = 7.52e-91
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRVIMSAPLS+DLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVIMSAPLSSDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146
           KGKGRAAADKDKGTKF+AEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csor.00g111050 vs. ExPASy TrEMBL
Match: A0A6J1KU52 (60S ribosomal protein L26-1-like OS=Cucurbita maxima OX=3661 GN=LOC111497228 PE=3 SV=1)

HSP 1 Score: 276 bits (707), Expect = 9.30e-94
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146
           KGKGRAAADKDKGTKFSAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146

[Close]

BLAST of Csor.00g111050 vs. ExPASy TrEMBL
Match: A0A6J1HHW6 (60S ribosomal protein L26-1-like OS=Cucurbita moschata OX=3662 GN=LOC111463615 PE=3 SV=1)

HSP 1 Score: 276 bits (707), Expect = 9.30e-94
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146
           KGKGRAAADKDKGTKFSAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146

[Close]

BLAST of Csor.00g111050 vs. ExPASy TrEMBL
Match: A0A6J1INB1 (60S ribosomal protein L26-1 OS=Cucurbita maxima OX=3661 GN=LOC111478547 PE=3 SV=1)

HSP 1 Score: 271 bits (692), Expect = 1.80e-91
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLS DLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146
           KGKGRAA+DKDKGTKF+AEDIMQSVD
Sbjct: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csor.00g111050 vs. ExPASy TrEMBL
Match: A0A6J1GH60 (60S ribosomal protein L26-1 OS=Cucurbita moschata OX=3662 GN=LOC111453858 PE=3 SV=1)

HSP 1 Score: 271 bits (692), Expect = 1.80e-91
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLS DLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146
           KGKGRAA+DKDKGTKF+AEDIMQSVD
Sbjct: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csor.00g111050 vs. ExPASy TrEMBL
Match: A0A5D3CR35 (Ribosomal protein L26/L24P, eukaryotic/archaeal OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004010 PE=3 SV=1)

HSP 1 Score: 270 bits (691), Expect = 2.56e-91
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLS DLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146
           KGKGRAAADKDKGTKF+AEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csor.00g111050 vs. TAIR 10
Match: AT3G49910.1 (Translation protein SH3-like family protein )

HSP 1 Score: 251.5 bits (641), Expect = 4.1e-67
Identity = 128/146 (87.67%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLS DLR KYNVRSMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K KGRAAADK+KGTKF++ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of Csor.00g111050 vs. TAIR 10
Match: AT5G67510.1 (Translation protein SH3-like family protein )

HSP 1 Score: 248.1 bits (632), Expect = 4.5e-66
Identity = 125/146 (85.62%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S V+ITKLRLDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K  GRAAADK+KGTKFSAED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

The following BLAST results are available for this feature:

BLAST of Csor.00g111050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51414	5.7e-66	87.67	60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2	[more]
Q9FJX2	6.3e-65	85.62	60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1	[more]
Q39411	3.6e-60	81.38	60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1	[more]
P61257	2.1e-44	68.31	60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1	[more]
P61254	2.1e-44	68.31	60S ribosomal protein L26 OS=Homo sapiens OX=9606 GN=RPL26 PE=1 SV=1	[more]

BLAST of Csor.00g111050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963400.1	1.92e-93	100.00	60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023003724.1 60S riboso...	[more]
XP_028772784.1	3.72e-91	97.26	60S ribosomal protein L26-1-like [Prosopis alba] >XP_028772785.1 60S ribosomal p...	[more]
XP_022950899.1	3.72e-91	97.26	60S ribosomal protein L26-1 [Cucurbita moschata] >XP_022978626.1 60S ribosomal p...	[more]
XP_004141862.1	5.29e-91	97.26	60S ribosomal protein L26-1 [Cucumis sativus] >XP_008440392.1 PREDICTED: 60S rib...	[more]
XP_038880918.1	7.52e-91	97.26	60S ribosomal protein L26-1 [Benincasa hispida]	[more]

BLAST of Csor.00g111050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KU52	9.30e-94	100.00	60S ribosomal protein L26-1-like OS=Cucurbita maxima OX=3661 GN=LOC111497228 PE=...	[more]
A0A6J1HHW6	9.30e-94	100.00	60S ribosomal protein L26-1-like OS=Cucurbita moschata OX=3662 GN=LOC111463615 P...	[more]
A0A6J1INB1	1.80e-91	97.26	60S ribosomal protein L26-1 OS=Cucurbita maxima OX=3661 GN=LOC111478547 PE=3 SV=...	[more]
A0A6J1GH60	1.80e-91	97.26	60S ribosomal protein L26-1 OS=Cucurbita moschata OX=3662 GN=LOC111453858 PE=3 S...	[more]
A0A5D3CR35	2.56e-91	97.26	Ribosomal protein L26/L24P, eukaryotic/archaeal OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Csor.00g111050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49910.1	4.1e-67	87.67	Translation protein SH3-like family protein	[more]
AT5G67510.1	4.5e-66	85.62	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 48..75 e-value: 7.4E-6 score: 35.5
IPR005824	KOW	PFAM	PF00467	KOW	coord: 51..82 e-value: 2.9E-9 score: 36.6
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PFAM	PF16906	Ribosomal_L26	coord: 8..121 e-value: 4.6E-38 score: 130.0
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	TIGRFAM	TIGR01080	TIGR01080	coord: 8..122 e-value: 2.4E-51 score: 171.0
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PANTHER	PTHR11143	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	coord: 1..146
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	HAMAP	MF_01326_A	Ribosomal_L24_A	coord: 9..121 score: 20.585115
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..143 e-value: 1.8E-56 score: 192.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR11143:SF16	60S RIBOSOMAL PROTEIN L26-1	coord: 1..146
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 52..69
IPR041988	Ribosomal protein L26/L24, KOW domain	CDD	cd06089	KOW_RPL26	coord: 52..105 e-value: 5.20431E-15 score: 63.3026
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 8..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g111050.m01	Csor.00g111050.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome