Csor.00g109770 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g109770
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr08: 3886451 .. 3886849 (-)
RNA-Seq Expression	Csor.00g109770
Synteny	Csor.00g109770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAAACGCTTACTTTCCTGTTCTATCTCTCTTCATTTCTTTCCATCGTCCGAGCTGAAGGCAGAGCACCTCATGGCCTGGTATATGAGAACCCGGTGGCGTTCTCTCCAATGGCGTATGATTTCTTCCATCCAAGAACCCGGAGTCCCAATGCCGAAGACCCATGTGGTGCATCCAAATGCTCCCCTTTGCCCCTTGCAGCTCAACTGCAATCTAATCCTGCACAAGAAGGCAAATACTCCACAACAACTCAGAAAGGTGAGGGGGTTGGTGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGGCGATGGGGGTGTACTATGTACTACGTACCCGCCTAGCCAACGCAAACCGAGCCATGTCTGGAAAACCTGGGGCTTGA

mRNA sequence

ATGGCTCAAACGCTTACTTTCCTGTTCTATCTCTCTTCATTTCTTTCCATCGTCCGAGCTGAAGGCAGAGCACCTCATGGCCTGGTATATGAGAACCCGGTGGCGTTCTCTCCAATGGCGTATGATTTCTTCCATCCAAGAACCCGGAGTCCCAATGCCGAAGACCCATGTGGTGCATCCAAATGCTCCCCTTTGCCCCTTGCAGCTCAACTGCAATCTAATCCTGCACAAGAAGGCAAATACTCCACAACAACTCAGAAAGGTGAGGGGGTTGGTGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGGCGATGGGGGTGTACTATGTACTACGTACCCGCCTAGCCAACGCAAACCGAGCCATGTCTGGAAAACCTGGGGCTTGA

Coding sequence (CDS)

ATGGCTCAAACGCTTACTTTCCTGTTCTATCTCTCTTCATTTCTTTCCATCGTCCGAGCTGAAGGCAGAGCACCTCATGGCCTGGTATATGAGAACCCGGTGGCGTTCTCTCCAATGGCGTATGATTTCTTCCATCCAAGAACCCGGAGTCCCAATGCCGAAGACCCATGTGGTGCATCCAAATGCTCCCCTTTGCCCCTTGCAGCTCAACTGCAATCTAATCCTGCACAAGAAGGCAAATACTCCACAACAACTCAGAAAGGTGAGGGGGTTGGTGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGGCGATGGGGGTGTACTATGTACTACGTACCCGCCTAGCCAACGCAAACCGAGCCATGTCTGGAAAACCTGGGGCTTGA

Protein sequence

MAQTLTFLFYLSSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTRLANANRAMSGKPGA

Homology

[Close]

BLAST of Csor.00g109770 vs. NCBI nr
Match: KAG6593424.1 (hypothetical protein SDJN03_12900, partial [Cucurbita argyrosperma subsp. sororia] >KAG6607217.1 hypothetical protein SDJN03_00559, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036902.1 hypothetical protein SDJN02_00522, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265 bits (676), Expect = 3.60e-89
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MAQTLTFLFYLSSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGAS 60
           MAQTLTFLFYLSSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGAS
Sbjct: 1   MAQTLTFLFYLSSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGAS 60

Query: 61  KCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTRLA 120
           KCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTRLA
Sbjct: 61  KCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTRLA 120

Query: 121 NANRAMSGKPGA 132
           NANRAMSGKPGA
Sbjct: 121 NANRAMSGKPGA 132

[Close]

BLAST of Csor.00g109770 vs. NCBI nr
Match: XP_023524574.1 (uncharacterized protein LOC111788471 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253 bits (645), Expect = 2.06e-84
Identity = 129/134 (96.27%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MAQTLTFLFYLSSF--LSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           MAQTLTFLFYLSSF  LSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG
Sbjct: 1   MAQTLTFLFYLSSFTFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60

Query: 61  ASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120
           ASKCSPLPLAAQLQS PAQE KYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR
Sbjct: 61  ASKCSPLPLAAQLQSKPAQESKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120

Query: 121 LANANRAMSGKPGA 132
           LANANRAMS KPGA
Sbjct: 121 LANANRAMSAKPGA 134

[Close]

BLAST of Csor.00g109770 vs. NCBI nr
Match: XP_022949574.1 (uncharacterized protein LOC111452884 [Cucurbita moschata])

HSP 1 Score: 252 bits (643), Expect = 4.16e-84
Identity = 128/134 (95.52%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MAQTLTFLFYLSSF--LSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M QTLTFLFYLSSF  LSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG
Sbjct: 1   MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60

Query: 61  ASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120
           ASKCSPLPLAAQLQSNPAQE KYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR
Sbjct: 61  ASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120

Query: 121 LANANRAMSGKPGA 132
           LAN NRAMS KPGA
Sbjct: 121 LANTNRAMSAKPGA 134

[Close]

BLAST of Csor.00g109770 vs. NCBI nr
Match: XP_022998560.1 (uncharacterized protein LOC111493157 [Cucurbita maxima])

HSP 1 Score: 248 bits (633), Expect = 1.39e-82
Identity = 126/134 (94.03%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAQTLTFLFYLSSF--LSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           MA+TLTFLFYLSSF  LS V AEGRAPHGL YENPVAFSPMAYDFFHPRTRSPNAEDPCG
Sbjct: 1   MAKTLTFLFYLSSFTFLSAVHAEGRAPHGLAYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60

Query: 61  ASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120
           ASKCSPLPLAAQLQSNPAQE KYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR
Sbjct: 61  ASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120

Query: 121 LANANRAMSGKPGA 132
           LANANRAMS KPGA
Sbjct: 121 LANANRAMSAKPGA 134

[Close]

BLAST of Csor.00g109770 vs. NCBI nr
Match: KAG7019217.1 (hypothetical protein SDJN02_18175, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212 bits (539), Expect = 3.30e-68
Identity = 110/135 (81.48%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 1   MAQTLTFLFYLSSF--LSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M Q LTFLF LSSF  LSI +AEGRAPHGLVYE+PVAFSPMAYDFFHP T++PNA+DPCG
Sbjct: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60

Query: 61  ASKCSPLPLAAQLQSNPAQEGKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120
           ASKCSPLPLAAQ+QS PA+E KYSTT QKG    G GGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRLANANRAMSGKP 130
           RTR ANANRAMS +P
Sbjct: 121 RTRQANANRAMSAQP 135

[Close]

BLAST of Csor.00g109770 vs. ExPASy TrEMBL
Match: A0A6J1GD80 (uncharacterized protein LOC111452884 OS=Cucurbita moschata OX=3662 GN=LOC111452884 PE=4 SV=1)

HSP 1 Score: 252 bits (643), Expect = 2.01e-84
Identity = 128/134 (95.52%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MAQTLTFLFYLSSF--LSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M QTLTFLFYLSSF  LSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG
Sbjct: 1   MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60

Query: 61  ASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120
           ASKCSPLPLAAQLQSNPAQE KYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR
Sbjct: 61  ASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120

Query: 121 LANANRAMSGKPGA 132
           LAN NRAMS KPGA
Sbjct: 121 LANTNRAMSAKPGA 134

[Close]

BLAST of Csor.00g109770 vs. ExPASy TrEMBL
Match: A0A6J1KCV5 (uncharacterized protein LOC111493157 OS=Cucurbita maxima OX=3661 GN=LOC111493157 PE=4 SV=1)

HSP 1 Score: 248 bits (633), Expect = 6.75e-83
Identity = 126/134 (94.03%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAQTLTFLFYLSSF--LSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           MA+TLTFLFYLSSF  LS V AEGRAPHGL YENPVAFSPMAYDFFHPRTRSPNAEDPCG
Sbjct: 1   MAKTLTFLFYLSSFTFLSAVHAEGRAPHGLAYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60

Query: 61  ASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120
           ASKCSPLPLAAQLQSNPAQE KYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR
Sbjct: 61  ASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120

Query: 121 LANANRAMSGKPGA 132
           LANANRAMS KPGA
Sbjct: 121 LANANRAMSAKPGA 134

[Close]

BLAST of Csor.00g109770 vs. ExPASy TrEMBL
Match: A0A6J1DWP3 (uncharacterized protein LOC111025099 OS=Momordica charantia OX=3673 GN=LOC111025099 PE=4 SV=1)

HSP 1 Score: 204 bits (518), Expect = 2.54e-65
Identity = 105/137 (76.64%), Postives = 115/137 (83.94%), Query Frame = 0


Query: 1   MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M Q LTFLF LSS  FLS+ RAEGRAPHGLVYE+P+AFSPMAYDFFHP  ++ NA+DPC 
Sbjct: 1   MTQMLTFLFCLSSSTFLSVARAEGRAPHGLVYESPLAFSPMAYDFFHPSAQNSNAKDPCA 60

Query: 61  ASKCSPLPLAAQLQSNPAQEGKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120
           ASKCSPLPLAAQ+QS PAQ+ KYST  QKGE   G GG+LGIV GI FAVFLAMGVYYVL
Sbjct: 61  ASKCSPLPLAAQVQSTPAQQSKYSTAVQKGEHGLGAGGVLGIVLGIMFAVFLAMGVYYVL 120

Query: 121 RTRLANANRAMSGKPGA 132
           RTR ANANRAMS +PGA
Sbjct: 121 RTRQANANRAMSTQPGA 137

[Close]

BLAST of Csor.00g109770 vs. ExPASy TrEMBL
Match: A0A5A7SXJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00600 PE=4 SV=1)

HSP 1 Score: 200 bits (508), Expect = 8.75e-64
Identity = 103/132 (78.03%), Postives = 113/132 (85.61%), Query Frame = 0


Query: 1   MAQTLTFLFYLSSF--LSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M + LTFLF LSSF  LS+ RA+GRAPHGLVYE+PVAFSPMAYDFFHP T++PN +DPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  ASKCSPLPLAAQLQSNPAQEGKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQ+QS PA+E KYSTT Q  +   G GGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRLANANRAMS 127
           RTR ANANRAMS
Sbjct: 121 RTRQANANRAMS 132

[Close]

BLAST of Csor.00g109770 vs. ExPASy TrEMBL
Match: A0A1S3C6E2 (uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=4 SV=1)

HSP 1 Score: 200 bits (508), Expect = 8.75e-64
Identity = 103/132 (78.03%), Postives = 113/132 (85.61%), Query Frame = 0


Query: 1   MAQTLTFLFYLSSF--LSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M + LTFLF LSSF  LS+ RA+GRAPHGLVYE+PVAFSPMAYDFFHP T++PN +DPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  ASKCSPLPLAAQLQSNPAQEGKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQ+QS PA+E KYSTT Q  +   G GGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRLANANRAMS 127
           RTR ANANRAMS
Sbjct: 121 RTRQANANRAMS 132

[Close]

BLAST of Csor.00g109770 vs. TAIR 10
Match: AT2G28410.1 (unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-18
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 0


Query: 1   MAQTLTFLFYLSSFL--SIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAE-DPC 60
           M      +F+ SS +  +   A+ RAPHGL YE PVAFSP A+DFFH +  +P+   +PC
Sbjct: 1   MTSKTCLVFFFSSLILTNFALAQDRAPHGLAYETPVAFSPSAFDFFHTQPENPDPTFNPC 60

Query: 61  GASKCSPLPLAAQLQ--SNPAQEG---KYSTTTQKGEGVGGILGIVFGITFAVFL 108
             S CSPLP+AA++Q  S  AQE      ST T+ G    G++GI+FG+ FAV +
Sbjct: 61  SESGCSPLPVAAKVQGASAKAQESDIVSISTGTRSGIEEHGVVGIIFGLAFAVMM 115

[Close]

BLAST of Csor.00g109770 vs. TAIR 10
Match: AT5G60650.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-14
Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 1   MAQTLTFLFYLSSFLSIVRAEGRAP-HGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGA 60
           +  +L F F   S L  V   G  P HG  Y NP AFSP AYDFFHP++   +  +P  +
Sbjct: 4   LTHSLLFFFSCLSMLLCVSIAGSRPVHGPAYTNPSAFSPQAYDFFHPKSSLSDHNNPPKS 63

Query: 61  S----KCSPLPLAAQLQSNPAQEGKYST-------TTQKGEGVGGILGIVFGITFAVFLA 120
           S      SP P    +    +Q  K S+       + ++ EG G  +G+V G++F  FL+
Sbjct: 64  SPSPLSLSPSPSKTSIVEPDSQGSKVSSDEHTTSESRREEEGRGETIGVVLGLSFIAFLS 123

Query: 121 MGVYYVLRTRLANANRAM 127
           +G+Y+V++ + AN  R +
Sbjct: 124 LGIYFVIKKQRANIIRTI 141

The following BLAST results are available for this feature:

BLAST of Csor.00g109770 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g109770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593424.1	3.60e-89	100.00	hypothetical protein SDJN03_12900, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023524574.1	2.06e-84	96.27	uncharacterized protein LOC111788471 [Cucurbita pepo subsp. pepo]	[more]
XP_022949574.1	4.16e-84	95.52	uncharacterized protein LOC111452884 [Cucurbita moschata]	[more]
XP_022998560.1	1.39e-82	94.03	uncharacterized protein LOC111493157 [Cucurbita maxima]	[more]
KAG7019217.1	3.30e-68	81.48	hypothetical protein SDJN02_18175, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Csor.00g109770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GD80	2.01e-84	95.52	uncharacterized protein LOC111452884 OS=Cucurbita moschata OX=3662 GN=LOC1114528...	[more]
A0A6J1KCV5	6.75e-83	94.03	uncharacterized protein LOC111493157 OS=Cucurbita maxima OX=3661 GN=LOC111493157...	[more]
A0A6J1DWP3	2.54e-65	76.64	uncharacterized protein LOC111025099 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5A7SXJ1	8.75e-64	78.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C6E2	8.75e-64	78.03	uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=...	[more]

BLAST of Csor.00g109770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28410.1	1.1e-18	45.22	unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bact...	[more]
AT5G60650.1	2.1e-14	34.06	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35718	EXPRESSED PROTEIN	coord: 5..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g109770.m01	Csor.00g109770.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane