Csor.00g109450 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g109450
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Polyadenylate-binding protein
Location	Csor_Chr20: 155504 .. 158021 (+)
RNA-Seq Expression	Csor.00g109450
Synteny	Csor.00g109450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTGGGAAATCTGCTCGTCCAGATTTCCATGGGAGTTGGATGATACGGAATCCATGGTTTACCCTGCGTACGTTTTGGTGATTCTCCTCTCCAATAGCGAAGCCAATCACAGATCAAGATCCCGCCGATTCGGTGGTGCTCTCCTCAAGTTCATAGGAATTGGTGAGCCATAAAAGATCCGTCGGAAAACCCTAGAAAAGGACTACGTCTTCTTCCCCGTCCTCTTCTTCTAATCACTAGAAAAGAAAAGAAGAATGGAAAAATCGAAGTCAAATTTCGTATGTCCCCTGCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCTCTCTCTCTTTTCGAGAATTGAAAATTGGAATAGTAGAAAGAAACTGTTCTGTCATTTTGTTGGAAAGGCGGGTAAGTAATACCCAATCTCAAGTTTCGCGCGTGATATGAACGTGGAGTGGACACGTGGCGCTCTAAGATTGTGGATGTGAATGGACGATCGTGATCGAAACGGGAGCCGTCGGAGGTTATCAAAAGGATTATTCCAGATTAAGCGTAGAAATCTTGTATAATAGTGTTGCAATGAATTTAATTAAAACATGTCCCTAAATTTGCAGAATAAGAATCAGGACTAAATTGGTAAAAATCAAACATTCTTCTTTTTTGGTTATTTTTACAGCTCACATATTACCAAAATAAACAACTGGATCTTAAAAGGAAACAGCCACAATGGCATTATAAACTGTTTGATCTTTGACTAACAATCTACTTTTTAAAACCGTAAAATCACATAAAATCAATTAATTCAGAGTGCACTGAGGGAGTGATGAAGTAGAATGTGAAATTAGAGAAAAGGAATAAAAATCGGAAGAAAAAGAAAATAGAGGATTTGGACCGCTAATCCTCTAAACATACGTACGGACGTAGTAATTTGGTCGTAATTTATAATTACCTTTAATTAATTTTAATTTTAATTTCAAATTCACAAGTTTTACTTTAATTACCCAAACTCTGAGAATAAAAGAAAAAAGCAAAGGAGGGAAAAGTAGAGAAAGAAAAAACGCGAAATTAGACATAATTTATATATATTTATTTATTCTCAAATATCAGATATTTTTGTTTTCGTTCTCTCGAAGCAAGGCGCTTTTTATCTCTCCCTCTTGTCTGCTACACGAAAATTAGGGTTCCTGGATCTTCCACTATTTTTGCGTCATTTCAGGTATCCGCGTTTTTTTTTTTTTGTTTTTTTTTCCTGTTCTTCAGGTTCTTCCCTCCTTCCCCGTCTCCGTATCTTTGTCTTTGCGTGCATTGTTATGATTTTAAACTCTTTCTTGTTTCTTGATTGTGTTTTATTTTTTTCTCACCTGGGCTTCCTTGCTGTCCTCTACTTGCTTTTGCTGCAGATCAAGATTATCCGTTTTTGTTACTTTCGTGAGTTATGTTTGTTGCGCGAAAAAGAATCTGGGATTTGAGAGCCATTAATTTTAGATTTAAAAGAGGTCGCGATTCGGATAGTTGTTTTTTTTTTTTTTTTTGGGGCTTCTTTTCGTTGATCGGAGGACGCATTTATTTCCATGTTTCCTTATTAAGTTCCTCACGAGCTCGACTTAGCTTTACATCCGAATATACTTGTGTTCACCCCTGGGTTTATGCATGCTTGAACCTTTCGTTTTCTGAGATACGGCTTTGTTCAATTTGAGTCTGAGGATTCCGCAAAAGCTGCCATAGAGTCACTGAATGGTTTTTACCATTGGGTATAAGCAGATGTAAATACAGTACTTCCTTATCATCAGCCATGCAATGATCGCCTGATGTGATGAAATATACATGAGCGTTCATAATTTGAAGTAACTGTGCAATGCTTATTATTTGTATGTATAATTAATTTACACTCACCATACATGTGTTACAGATATGTCGGTAAAAGTTTATCTGGAAGAGTGAACGAGTCCTTGCCAATCCTGATGTTAAATACACCAATTTGTATGTGAAAAATCTTGACGGGCAGAGATCGGGGAAGAGCATTTGCAGGAAAAGTTTTCTGAGTTTGGAAAAATCTCCAGCATGATTATTTCAAGGGATGAGAATGGAATGTCAAGAGGTTTTGGCTTTATAAACTTTGTAAACTCTGATGATGCGAAACGGGCATTAGAAGCACTTAATGGATCGCAACTGGGTAACAGATGCATCTTTGTCCCCTTTTGTCTTTAACTAGCATTTTTTGATGTTAACTCATATGATGTGTTTTTTTTTATCAATCACTATGTTCTTTCTTTACCAGGTTCTAAGCATATCTACATGCACGGGCGCAGAAGAAGACAGAGCGTGAGGAAGTATTACGTCGACGTTACGAAGAGAAATGTAAAGAGCAGCGTCTTAAAATATAAGGTACCATTCAAAAATTCGTCCTTTTTCATTGTTGTATAATTGTAGTCTCTTTCTCCCAATAAAACAATATCAACTATTATGTAGGGCTCAAATGTGTATGTGAGAACATTGAAGATGGTGTTACTGATGAAGAACTAA

mRNA sequence

ATGAGCTGGGAAATCTGCTCGTCCAGATTTCCATGGGAGTTGGATGATACGGAATCCATGGTTTACCCTGCGTACGTTTTGGTGATTCTCCTCTCCAATAGCGAAGCCAATCACAGATCAAGATCCCGCCGATTCGGTGGTGCTCTCCTCAAGTTCATAGGAATTGAGATCGGGGAAGAGCATTTGCAGGAAAAGTTTTCTGAGTTTGGAAAAATCTCCAGCATGATTATTTCAAGGGATGAGAATGGAATGTCAAGAGGTTTTGGCTTTATAAACTTTGTAAACTCTGATGATGCGAAACGGGCATTAGAAGCACTTAATGGATCGCAACTGGGTTCTAAGCATATCTACATGCACGGGCGCAGAAGAAGACAGAGCGTGAGGAAGTATTACGTCGACGTTACGAAGAGAAATGTAAAGAGCAGCGTCTTAAAATATAAGGGCTCAAATGTGTATGTGAGAACATTGAAGATGGTGTTACTGATGAAGAACTAA

Coding sequence (CDS)

ATGAGCTGGGAAATCTGCTCGTCCAGATTTCCATGGGAGTTGGATGATACGGAATCCATGGTTTACCCTGCGTACGTTTTGGTGATTCTCCTCTCCAATAGCGAAGCCAATCACAGATCAAGATCCCGCCGATTCGGTGGTGCTCTCCTCAAGTTCATAGGAATTGAGATCGGGGAAGAGCATTTGCAGGAAAAGTTTTCTGAGTTTGGAAAAATCTCCAGCATGATTATTTCAAGGGATGAGAATGGAATGTCAAGAGGTTTTGGCTTTATAAACTTTGTAAACTCTGATGATGCGAAACGGGCATTAGAAGCACTTAATGGATCGCAACTGGGTTCTAAGCATATCTACATGCACGGGCGCAGAAGAAGACAGAGCGTGAGGAAGTATTACGTCGACGTTACGAAGAGAAATGTAAAGAGCAGCGTCTTAAAATATAAGGGCTCAAATGTGTATGTGAGAACATTGAAGATGGTGTTACTGATGAAGAACTAA

Protein sequence

MSWEICSSRFPWELDDTESMVYPAYVLVILLSNSEANHRSRSRRFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRALEALNGSQLGSKHIYMHGRRRRQSVRKYYVDVTKRNVKSSVLKYKGSNVYVRTLKMVLLMKN

Homology

[Close]

BLAST of Csor.00g109450 vs. ExPASy Swiss-Prot
Match: P42731 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PAB2 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.6e-16
Identity = 45/127 (35.43%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 31  LSNSEANHRSRSRRFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGF 90
           L   E +  +   +F    +K +     ++ L+  F E+GKI+S ++ +D  G S+GFGF
Sbjct: 200 LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGF 259

Query: 91  INFVNSDDAKRALEALNGSQLGSKHIYMHGRRRRQSVRKYYVDVT-KRNVKSSVLKYKGS 150
           +NF N+DDA RA+E+LNG +   K  Y+ GR +++S R+  + V  ++N+K +  K++ S
Sbjct: 260 VNFENADDAARAVESLNGHKFDDKEWYV-GRAQKKSERETELRVRYEQNLKEAADKFQSS 319

Query: 151 NVYVRTL 157
           N+YV+ L
Sbjct: 320 NLYVKNL 325

[Close]

BLAST of Csor.00g109450 vs. ExPASy Swiss-Prot
Match: Q9ZQA8 (Polyadenylate-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=PAB7 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-15
Identity = 42/118 (35.59%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 44  RFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 103
           ++    +K +  ++ E+ L+EKF+EFGKI S+ I++DEN + RG+ F+NF N +DA+RA 
Sbjct: 199 KYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAA 258

Query: 104 EALNGSQLGSKHIYMHGRRRRQSVRKYYV-DVTKRNVKSSVLKYKGSNVYVRTLKMVL 161
           E +NG++ GSK +Y+ GR ++++ R+  + +  K   +   +  K SN+YV+ + + +
Sbjct: 259 ETVNGTKFGSKCLYV-GRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAV 315

[Close]

BLAST of Csor.00g109450 vs. ExPASy Swiss-Prot
Match: Q13310 (Polyadenylate-binding protein 4 OS=Homo sapiens OX=9606 GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 41/123 (33.33%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 35  EANHRSRSRRFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFV 94
           EA   ++++ F    +K  G E+ +E L+E FS+FGK  S+ + RD NG S+GFGF+++ 
Sbjct: 180 EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYE 239

Query: 95  NSDDAKRALEALNGSQLGSKHIYMHGRRRRQSVRKYYVDVTKRNVKSS-VLKYKGSNVYV 154
             +DA +A+E +NG ++  K I++ GR +++  R+  +      +K   + +Y+G N+Y+
Sbjct: 240 KHEDANKAVEEMNGKEISGKIIFV-GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 299

Query: 155 RTL 157
           + L
Sbjct: 300 KNL 301

[Close]

BLAST of Csor.00g109450 vs. ExPASy Swiss-Prot
Match: P29341 (Polyadenylate-binding protein 1 OS=Mus musculus OX=10090 GN=Pabpc1 PE=1 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 5.7e-14
Identity = 41/123 (33.33%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 35  EANHRSRSRRFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFV 94
           EA   +R++ F    +K  G ++ +E L+E F +FG   S+ +  DE+G S+GFGF++F 
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFE 239

Query: 95  NSDDAKRALEALNGSQLGSKHIYMHGRRRRQSVRKYYVDVTKRNVKSS-VLKYKGSNVYV 154
             +DA++A++ +NG +L  K IY+ GR +++  R+  +      +K   + +Y+G N+YV
Sbjct: 240 RHEDAQKAVDEMNGKELNGKQIYV-GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 299

Query: 155 RTL 157
           + L
Sbjct: 300 KNL 301

[Close]

BLAST of Csor.00g109450 vs. ExPASy Swiss-Prot
Match: Q9EPH8 (Polyadenylate-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.7e-14
Identity = 41/123 (33.33%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 35  EANHRSRSRRFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFV 94
           EA   +R++ F    +K  G ++ +E L+E F +FG   S+ +  DE+G S+GFGF++F 
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFE 239

Query: 95  NSDDAKRALEALNGSQLGSKHIYMHGRRRRQSVRKYYVDVTKRNVKSS-VLKYKGSNVYV 154
             +DA++A++ +NG +L  K IY+ GR +++  R+  +      +K   + +Y+G N+YV
Sbjct: 240 RHEDAQKAVDEMNGKELNGKQIYV-GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 299

Query: 155 RTL 157
           + L
Sbjct: 300 KNL 301

[Close]

BLAST of Csor.00g109450 vs. NCBI nr
Match: KAG6570338.1 (Polyadenylate-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 322 bits (825), Expect = 7.54e-111
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MSWEICSSRFPWELDDTESMVYPAYVLVILLSNSEANHRSRSRRFGGALLKFIGIEIGEE 60
           MSWEICSSRFPWELDDTESMVYPAYVLVILLSNSEANHRSRSRRFGGALLKFIGIEIGEE
Sbjct: 1   MSWEICSSRFPWELDDTESMVYPAYVLVILLSNSEANHRSRSRRFGGALLKFIGIEIGEE 60

Query: 61  HLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRALEALNGSQLGSKHIYMHG 120
           HLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRALEALNGSQLGSKHIYMHG
Sbjct: 61  HLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRALEALNGSQLGSKHIYMHG 120

Query: 121 RRRRQSVRKYYVDVTKRNVKSSVLKYKGSNVYVRTLKMVLLMKN 164
           RRRRQSVRKYYVDVTKRNVKSSVLKYKGSNVYVRTLKMVLLMKN
Sbjct: 121 RRRRQSVRKYYVDVTKRNVKSSVLKYKGSNVYVRTLKMVLLMKN 164

[Close]

BLAST of Csor.00g109450 vs. NCBI nr
Match: XP_022935348.1 (LOW QUALITY PROTEIN: polyadenylate-binding protein 7-like [Cucurbita moschata])

HSP 1 Score: 144 bits (362), Expect = 1.84e-36
Identity = 78/117 (66.67%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 44  RFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 103
           ++    +K +  EIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL
Sbjct: 227 KYTNLYVKNLDAEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 286

Query: 104 EALNGSQLGSKHIYMHGRR----RRQSVRKYYVDVTKRNVKSSVLKYKGSNVYVRTL 156
           EALNGSQLGSKHIY+   +    R + +R+ Y +      K  VLKYKGSNVYV+ +
Sbjct: 287 EALNGSQLGSKHIYIARAQKKTEREEVLRRRYEE----KCKEQVLKYKGSNVYVKNI 339

[Close]

BLAST of Csor.00g109450 vs. NCBI nr
Match: KAG6580648.1 (Polyadenylate-binding protein 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143 bits (360), Expect = 5.56e-36
Identity = 76/113 (67.26%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 44  RFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 103
           ++    +K +  EIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL
Sbjct: 689 KYTNLYVKNLDAEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 748

Query: 104 EALNGSQLGSKHIYMHGRRRRQSVRKYYVDVTKRNVKSSVLKYKGSNVYVRTL 156
           EALNGSQLGSKHIY                + +   K SVLKYKGSNVYV+ +
Sbjct: 749 EALNGSQLGSKHIY----------------IARAQKKQSVLKYKGSNVYVKNI 785

[Close]

BLAST of Csor.00g109450 vs. NCBI nr
Match: XP_022983173.1 (LOW QUALITY PROTEIN: polyadenylate-binding protein 7-like [Cucurbita maxima])

HSP 1 Score: 139 bits (350), Expect = 6.64e-35
Identity = 73/113 (64.60%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 44  RFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 103
           ++    +K +  EIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAK+AL
Sbjct: 191 KYTNLYVKNLDSEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKQAL 250

Query: 104 EALNGSQLGSKHIYMHGRRRRQSVRKYYVDVTKRNVKSSVLKYKGSNVYVRTL 156
           EALNGSQLGSK IY+   +++    +      +   K  VLKYKGSNVYV+ +
Sbjct: 251 EALNGSQLGSKRIYIARAQKKTEREEVLRRRDEEKCKEQVLKYKGSNVYVKNI 303

[Close]

BLAST of Csor.00g109450 vs. NCBI nr
Match: XP_023527800.1 (LOW QUALITY PROTEIN: polyadenylate-binding protein 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138 bits (348), Expect = 1.58e-34
Identity = 76/117 (64.96%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 44  RFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 103
           ++    +K +  EIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVN DDAKRAL
Sbjct: 227 KYTNLYVKNLDSEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNPDDAKRAL 286

Query: 104 EALNGSQLGSKHIYMHGRR----RRQSVRKYYVDVTKRNVKSSVLKYKGSNVYVRTL 156
           EALNGSQLGSK IY+   +    R + +R+ Y +      K  VLKYKGSNVYV+ +
Sbjct: 287 EALNGSQLGSKRIYIARAQKKTEREEVLRRRYEE----KCKEQVLKYKGSNVYVKNI 339

[Close]

BLAST of Csor.00g109450 vs. ExPASy TrEMBL
Match: A0A6J1FAA9 (Polyadenylate-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111442260 PE=3 SV=1)

HSP 1 Score: 144 bits (362), Expect = 8.91e-37
Identity = 78/117 (66.67%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 44  RFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 103
           ++    +K +  EIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL
Sbjct: 227 KYTNLYVKNLDAEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 286

Query: 104 EALNGSQLGSKHIYMHGRR----RRQSVRKYYVDVTKRNVKSSVLKYKGSNVYVRTL 156
           EALNGSQLGSKHIY+   +    R + +R+ Y +      K  VLKYKGSNVYV+ +
Sbjct: 287 EALNGSQLGSKHIYIARAQKKTEREEVLRRRYEE----KCKEQVLKYKGSNVYVKNI 339

[Close]

BLAST of Csor.00g109450 vs. ExPASy TrEMBL
Match: A0A6J1J708 (Polyadenylate-binding protein OS=Cucurbita maxima OX=3661 GN=LOC111481806 PE=3 SV=1)

HSP 1 Score: 139 bits (350), Expect = 3.22e-35
Identity = 73/113 (64.60%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 44  RFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 103
           ++    +K +  EIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAK+AL
Sbjct: 191 KYTNLYVKNLDSEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKQAL 250

Query: 104 EALNGSQLGSKHIYMHGRRRRQSVRKYYVDVTKRNVKSSVLKYKGSNVYVRTL 156
           EALNGSQLGSK IY+   +++    +      +   K  VLKYKGSNVYV+ +
Sbjct: 251 EALNGSQLGSKRIYIARAQKKTEREEVLRRRDEEKCKEQVLKYKGSNVYVKNI 303

[Close]

BLAST of Csor.00g109450 vs. ExPASy TrEMBL
Match: A0A5D3DNK0 (Polyadenylate-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003260 PE=3 SV=1)

HSP 1 Score: 135 bits (339), Expect = 1.09e-33
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 44  RFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 103
           ++    +K +  EIGEEHLQEKFSEFGKISSMIISRDENG+SRGFGFINF NSDDAKRAL
Sbjct: 191 KYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRAL 250

Query: 104 EALNGSQLGSKHIYMHGRR----RRQSVRKYYVDVTKRNVKSSVLKYKGSNVYVRTL 156
           E LNGSQLGSK IY+   +    R + +R++Y +      K  VLKYKGSNVYV+ +
Sbjct: 251 ETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEE----KCKEQVLKYKGSNVYVKNI 303

[Close]

BLAST of Csor.00g109450 vs. ExPASy TrEMBL
Match: A0A1S3B6I1 (Polyadenylate-binding protein OS=Cucumis melo OX=3656 GN=LOC103486548 PE=3 SV=1)

HSP 1 Score: 135 bits (339), Expect = 1.09e-33
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 44  RFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 103
           ++    +K +  EIGEEHLQEKFSEFGKISSMIISRDENG+SRGFGFINF NSDDAKRAL
Sbjct: 191 KYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRAL 250

Query: 104 EALNGSQLGSKHIYMHGRR----RRQSVRKYYVDVTKRNVKSSVLKYKGSNVYVRTL 156
           E LNGSQLGSK IY+   +    R + +R++Y +      K  VLKYKGSNVYV+ +
Sbjct: 251 ETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEE----KCKEQVLKYKGSNVYVKNI 303

[Close]

BLAST of Csor.00g109450 vs. ExPASy TrEMBL
Match: A0A0A0LEC2 (Polyadenylate-binding protein OS=Cucumis sativus OX=3659 GN=Csa_3G746540 PE=3 SV=1)

HSP 1 Score: 135 bits (339), Expect = 1.38e-33
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 44  RFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 103
           ++    +K +  EIGEEHLQEKFSEFGKISSMIISRDENG+SRGFGFINF NSDDAKRAL
Sbjct: 191 KYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRAL 250

Query: 104 EALNGSQLGSKHIYMHGRR----RRQSVRKYYVDVTKRNVKSSVLKYKGSNVYVRTL 156
           E LNGSQLGSK IY+   +    R + +R++Y +      K  VLKYKGSNVYV+ +
Sbjct: 251 ETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEE----KCKEQVLKYKGSNVYVKNI 303

[Close]

BLAST of Csor.00g109450 vs. TAIR 10
Match: AT4G34110.1 (poly(A) binding protein 2 )

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-17
Identity = 45/127 (35.43%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 31  LSNSEANHRSRSRRFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGF 90
           L   E +  +   +F    +K +     ++ L+  F E+GKI+S ++ +D  G S+GFGF
Sbjct: 200 LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGF 259

Query: 91  INFVNSDDAKRALEALNGSQLGSKHIYMHGRRRRQSVRKYYVDVT-KRNVKSSVLKYKGS 150
           +NF N+DDA RA+E+LNG +   K  Y+ GR +++S R+  + V  ++N+K +  K++ S
Sbjct: 260 VNFENADDAARAVESLNGHKFDDKEWYV-GRAQKKSERETELRVRYEQNLKEAADKFQSS 319

Query: 151 NVYVRTL 157
           N+YV+ L
Sbjct: 320 NLYVKNL 325

[Close]

BLAST of Csor.00g109450 vs. TAIR 10
Match: AT2G36660.1 (poly(A) binding protein 7 )

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-16
Identity = 42/118 (35.59%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 44  RFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 103
           ++    +K +  ++ E+ L+EKF+EFGKI S+ I++DEN + RG+ F+NF N +DA+RA 
Sbjct: 199 KYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAA 258

Query: 104 EALNGSQLGSKHIYMHGRRRRQSVRKYYV-DVTKRNVKSSVLKYKGSNVYVRTLKMVL 161
           E +NG++ GSK +Y+ GR ++++ R+  + +  K   +   +  K SN+YV+ + + +
Sbjct: 259 ETVNGTKFGSKCLYV-GRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAV 315

[Close]

BLAST of Csor.00g109450 vs. TAIR 10
Match: AT1G49760.1 (poly(A) binding protein 8 )

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-15
Identity = 43/114 (37.72%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 44  RFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 103
           +F    +K +   + +E L + F EFG  +S +I RD  G S+GFGF+NF NSDDA RA+
Sbjct: 222 KFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAV 281

Query: 104 EALNGSQLGSKHIYMHGRRRRQSVRKYYV-DVTKRNVKSSVLKYKGSNVYVRTL 157
           +ALNG     K  ++ G+ +++S R+  +    ++++K +  K +GSN+YV+ L
Sbjct: 282 DALNGKTFDDKEWFV-GKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNL 334

[Close]

BLAST of Csor.00g109450 vs. TAIR 10
Match: AT1G49760.2 (poly(A) binding protein 8 )

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-15
Identity = 43/114 (37.72%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 44  RFGGALLKFIGIEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRAL 103
           +F    +K +   + +E L + F EFG  +S +I RD  G S+GFGF+NF NSDDA RA+
Sbjct: 222 KFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAV 281

Query: 104 EALNGSQLGSKHIYMHGRRRRQSVRKYYV-DVTKRNVKSSVLKYKGSNVYVRTL 157
           +ALNG     K  ++ G+ +++S R+  +    ++++K +  K +GSN+YV+ L
Sbjct: 282 DALNGKTFDDKEWFV-GKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNL 334

[Close]

BLAST of Csor.00g109450 vs. TAIR 10
Match: AT2G23350.1 (poly(A) binding protein 4 )

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13
Identity = 47/146 (32.19%), Postives = 80/146 (54.79%), Query Frame = 0


Query: 14  LDDTESMVYPAYVLVILLSNSEANHRSRSRRFGGALLKFIGIEIGEEHLQEKFSEFGKIS 73
           L+D +  V P       L   E    +   +F    +K +     ++ L+  F ++G IS
Sbjct: 199 LNDKQIFVGP------FLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSIS 258

Query: 74  SMIISRDENGMSRGFGFINFVNSDDAKRALEALNGSQLGSKHIYMHGRRRRQSVRKYYVD 133
           S ++ RD +G SR FGF+NF N +DA RA+EALNG +   K  Y+ G+ +++S R+  ++
Sbjct: 259 SAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYV-GKAQKKSERE--LE 318

Query: 134 VTKRNVKSSV---LKYKGSNVYVRTL 157
           +++R  + S     K+ G N+YV+ L
Sbjct: 319 LSRRYEQGSSDGGNKFDGLNLYVKNL 335

The following BLAST results are available for this feature:

BLAST of Csor.00g109450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42731	3.6e-16	35.43	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PAB2 PE=1 SV=...	[more]
Q9ZQA8	5.2e-15	35.59	Polyadenylate-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=PAB7 PE=2 SV=...	[more]
Q13310	1.5e-14	33.33	Polyadenylate-binding protein 4 OS=Homo sapiens OX=9606 GN=PABPC4 PE=1 SV=1	[more]
P29341	5.7e-14	33.33	Polyadenylate-binding protein 1 OS=Mus musculus OX=10090 GN=Pabpc1 PE=1 SV=2	[more]
Q9EPH8	5.7e-14	33.33	Polyadenylate-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Pabpc1 PE=1 SV=...	[more]

BLAST of Csor.00g109450 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570338.1	7.54e-111	100.00	Polyadenylate-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022935348.1	1.84e-36	66.67	LOW QUALITY PROTEIN: polyadenylate-binding protein 7-like [Cucurbita moschata]	[more]
KAG6580648.1	5.56e-36	67.26	Polyadenylate-binding protein 7, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022983173.1	6.64e-35	64.60	LOW QUALITY PROTEIN: polyadenylate-binding protein 7-like [Cucurbita maxima]	[more]
XP_023527800.1	1.58e-34	64.96	LOW QUALITY PROTEIN: polyadenylate-binding protein 7-like [Cucurbita pepo subsp....	[more]

BLAST of Csor.00g109450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FAA9	8.91e-37	66.67	Polyadenylate-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111442260 PE=3...	[more]
A0A6J1J708	3.22e-35	64.60	Polyadenylate-binding protein OS=Cucurbita maxima OX=3661 GN=LOC111481806 PE=3 S...	[more]
A0A5D3DNK0	1.09e-33	63.25	Polyadenylate-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3B6I1	1.09e-33	63.25	Polyadenylate-binding protein OS=Cucumis melo OX=3656 GN=LOC103486548 PE=3 SV=1	[more]
A0A0A0LEC2	1.38e-33	63.25	Polyadenylate-binding protein OS=Cucumis sativus OX=3659 GN=Csa_3G746540 PE=3 SV...	[more]

BLAST of Csor.00g109450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34110.1	2.5e-17	35.43	poly(A) binding protein 2	[more]
AT2G36660.1	3.7e-16	35.59	poly(A) binding protein 7	[more]
AT1G49760.1	4.1e-15	37.72	poly(A) binding protein 8	[more]
AT1G49760.2	4.1e-15	37.72	poly(A) binding protein 8	[more]
AT2G23350.1	1.3e-13	32.19	poly(A) binding protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 47..119 e-value: 3.2E-15 score: 66.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 57..116 e-value: 1.5E-16 score: 60.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 42..123 score: 16.295467
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 50..130 e-value: 6.3E-19 score: 69.7
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 49..155
None	No IPR available	PANTHER	PTHR24012:SF841	POLYADENYLATE-BINDING PROTEIN	coord: 49..155
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 55..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g109450.m01	Csor.00g109450.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003730	mRNA 3'-UTR binding
molecular_function	GO:0008143	poly(A) binding
molecular_function	GO:0008266	poly(U) RNA binding
molecular_function	GO:0003676	nucleic acid binding