Csor.00g109190 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g109190
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	mitochondrial dicarboxylate/tricarboxylate transporter DTC-like
Location	Csor_Chr20: 22499 .. 24466 (-)
RNA-Seq Expression	Csor.00g109190
Synteny	Csor.00g109190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCGATTGGAAGCTCATGTCCGCCGCTGTTTGGCCCACTGTCAAGCCATTTTTTAATGGCGGTGTCTCCGGTATGCTTGCTACCTGCGTCATTCAAGGTACTCTACTTCCATCCTTCTCCTTTTCATCTCTCTCTTAATTCCTTACGTCAAATGCCAATGCCTTCTCTTTCATTGCTGCTTCTACTCTAACGCTGTTATTTACATTTTTCTCTCTGTACGATTTATTGTCTGTATTACTCGTGAATGGTCACCTTTGCATACTAAGCGTAGGCAGCCGCGTGCAGAGGAATATAACTTTTCTCATCAGTTTATCCTCTTTTGTTATCTCTTTCTTAGTAATAACCTATTCATATCATATTCACGTGTGCACAGTTTGTCTTTGTTCAAAAACAATTGCTGATAACTTAACCCTAGTCATTGTTGGTCATTAAATGATTGGATTCCTATTAGTTGTAACAACTCTATGTTAATTTTGGCAAGGTCTCTGTGGAATAATAGGCAATTTTGAGAGAGGTCAAACTGTAAGTAAGTGATTAATTAGCTCTCTTGGATATGAAATTTAGTTTAATGAGAGGATCTAAATGTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCTTATTCCTATGCTGTTTCAGTTTTTAGATATTAGATTTATGATTAGGTAGCATGTCGTATTGTGGTAATCCACAGACTTTCTTTGCTGCTTCTACTCTACCCTAAGGACTTGAACGTACTGTTCACATCTTCAGTATTACCAGCTTAGCTTATATTGCTTGAGAGGCAATAAGCTATTCAACATAAGAATTCTTCTGGAAAATTTCCGTACTCTGGTTCCTTAGATTGTGCCATGAAAACTCTCAAGGGAGGAGGGCCGTTAAAGTTTTACACTGGATTTCCAGTATACTGCGTGAGAATTGCCCCCCATATCATTGGTCTCTCTGTTCTTAGGATACCATATTTAGGATAATTAACTGAACTTTGACTTCTGACAATCGAGAGGAAATCGTCGACGAAGTAAAAAACGGTCGAAGGAAAACTCTTTGAAAGAAAAAAATAAAGGAAAACAAGGGAGAGAATATTTGCCCCAAGACCAGATTGCAGTTTATTATTCCATTAGCATATTTAAAGAACAACATATCCTAAACCTATCCTAAAAATAGAAAAGAAAATGGAAAAGAAAATGGCAAATGGCAACTAAATTAATGCCCTTCCTCTAGTGGCTATTCCACTCACTTAATTTGGGTTAGAAATAGGAATGACTTTAACAACAAAATAGGAAAGGTTTAATTAAACCATATGAATTTATCAAACAGATACTTGTGGTAGATGGTAGATGACTTGGATTTTCCTAAACCAGATTCAAAAGGTGGAAAAATTCTTTGGGTTTTGAAGGACTGACCAAGATGATGAATATCCCTTTCCAAGTTGATATCAGGCTTAAAAAACAAAGGTTTTTTTCCTTGTGGTTCTTTAGCCATGTGGTATTCTTACTTCCTTTGAATACAGATTTGTCGCCTTGAGTTTAAAAGCGTCTTAATTATATTGTTCTGCGCCAACATGGTTGTAAGGTGCAAGACTGATAGAGGTAGGAGGCGGGTATAGGATTGCTACTGTAATTAGAATGTACCAAATTCTCGCTGGGGAAAACCACGGAGTTCTTTAAACTATTACCCCACCAATTCTATTTTTATCGAGATATTTGAATGATATGAAATTAACGTCTGGAGGAAGCGGCCAATCTGCCAGTGTGAATCGTTCATGTTTGATTTAGGGTCTTAGAACTAAATGTTTCCTGACATGTTATGGGGTCTTTGTTATCATCAGCCACAGACAATCATATCAGCATTTATAAGAAAGAATATAGCTTCATTAGAAGAAATTATGAAATGGCAGAAGATATACAATCAGAAGCAAGGAAAAGGCATAATGATGATGAGAGCGACAGAAGCAATGCGGATTGA

mRNA sequence

ATGGCTGCCGATTGGAAGCTCATGTCCGCCGCTGTTTGGCCCACTGTCAAGCCATTTTTTAATGGCGGTGTCTCCGGTATGCTTGCTACCTGCGTCATTCAAGCCACAGACAATCATATCAGCATTTATAAGAAAGAATATAGCTTCATTAGAAGAAATTATGAAATGGCAGAAGATATACAATCAGAAGCAAGGAAAAGGCATAATGATGATGAGAGCGACAGAAGCAATGCGGATTGA

Coding sequence (CDS)

ATGGCTGCCGATTGGAAGCTCATGTCCGCCGCTGTTTGGCCCACTGTCAAGCCATTTTTTAATGGCGGTGTCTCCGGTATGCTTGCTACCTGCGTCATTCAAGCCACAGACAATCATATCAGCATTTATAAGAAAGAATATAGCTTCATTAGAAGAAATTATGAAATGGCAGAAGATATACAATCAGAAGCAAGGAAAAGGCATAATGATGATGAGAGCGACAGAAGCAATGCGGATTGA

Protein sequence

MAADWKLMSAAVWPTVKPFFNGGVSGMLATCVIQATDNHISIYKKEYSFIRRNYEMAEDIQSEARKRHNDDESDRSNAD

Homology

[Close]

BLAST of Csor.00g109190 vs. ExPASy Swiss-Prot
Match: Q9C5M0 (Mitochondrial dicarboxylate/tricarboxylate transporter DTC OS=Arabidopsis thaliana OX=3702 GN=DTC PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-05
Identity = 23/35 (65.71%), Postives = 25/35 (71.43%), Query Frame = 0


Query: 3  ADWKLMSAAVWPTVKPFFNGGVSGMLATCVIQATD 38
          A+ K    +VW TVKPF NGG SGMLATCVIQ  D
Sbjct: 2  AEEKKAPISVWTTVKPFVNGGASGMLATCVIQPID 36

[Close]

BLAST of Csor.00g109190 vs. NCBI nr
Match: KAG6570312.1 (Mitochondrial dicarboxylate/tricarboxylate transporter DTC, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (404), Expect = 2.34e-49
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MAADWKLMSAAVWPTVKPFFNGGVSGMLATCVIQATDNHISIYKKEYSFIRRNYEMAEDI 60
          MAADWKLMSAAVWPTVKPFFNGGVSGMLATCVIQATDNHISIYKKEYSFIRRNYEMAEDI
Sbjct: 1  MAADWKLMSAAVWPTVKPFFNGGVSGMLATCVIQATDNHISIYKKEYSFIRRNYEMAEDI 60

Query: 61 QSEARKRHNDDESDRSNAD 79
          QSEARKRHNDDESDRSNAD
Sbjct: 61 QSEARKRHNDDESDRSNAD 79

[Close]

BLAST of Csor.00g109190 vs. NCBI nr
Match: MBA0582747.1 (hypothetical protein [Gossypium raimondii])

HSP 1 Score: 59.3 bits (142), Expect = 1.80e-08
Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1  MAADWKLMSAAVWPTVKPFFNGGVSGMLATCVIQATD 37
          MA + K  SA VWPTVKPF NGG SGMLATCVIQ  D
Sbjct: 1  MAEEKKAQSAGVWPTVKPFVNGGASGMLATCVIQPID 37

[Close]

BLAST of Csor.00g109190 vs. NCBI nr
Match: XP_022958632.1 (mitochondrial dicarboxylate/tricarboxylate transporter DTC-like [Cucurbita moschata] >XP_022996246.1 mitochondrial dicarboxylate/tricarboxylate transporter DTC-like [Cucurbita maxima] >XP_023533509.1 mitochondrial dicarboxylate/tricarboxylate transporter DTC-like [Cucurbita pepo subsp. pepo] >KAG6605835.1 Mitochondrial dicarboxylate/tricarboxylate transporter DTC, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 3.34e-08
Identity = 28/37 (75.68%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1  MAADWKLMSAAVWPTVKPFFNGGVSGMLATCVIQATD 37
          MA D K  SA VWPTVKPF NGG SGMLATCVIQ  D
Sbjct: 1  MADDKKSKSAGVWPTVKPFVNGGASGMLATCVIQPID 37

[Close]

BLAST of Csor.00g109190 vs. NCBI nr
Match: KAG7035792.1 (Mitochondrial dicarboxylate/tricarboxylate transporter DTC, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.7 bits (143), Expect = 3.78e-08
Identity = 28/37 (75.68%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1  MAADWKLMSAAVWPTVKPFFNGGVSGMLATCVIQATD 37
          MA D K  SA VWPTVKPF NGG SGMLATCVIQ  D
Sbjct: 48 MADDKKSKSAGVWPTVKPFVNGGASGMLATCVIQPID 84

[Close]

BLAST of Csor.00g109190 vs. NCBI nr
Match: KJB20577.1 (hypothetical protein B456_003G154700 [Gossypium raimondii])

HSP 1 Score: 59.3 bits (142), Expect = 4.56e-08
Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1  MAADWKLMSAAVWPTVKPFFNGGVSGMLATCVIQATD 37
          MA + K  SA VWPTVKPF NGG SGMLATCVIQ  D
Sbjct: 1  MAEEKKAQSAGVWPTVKPFVNGGASGMLATCVIQPID 37

[Close]

BLAST of Csor.00g109190 vs. ExPASy TrEMBL
Match: A0A7J8P0H5 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=Gorai_024880 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.72e-09
Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1  MAADWKLMSAAVWPTVKPFFNGGVSGMLATCVIQATD 37
          MA + K  SA VWPTVKPF NGG SGMLATCVIQ  D
Sbjct: 1  MAEEKKAQSAGVWPTVKPFVNGGASGMLATCVIQPID 37

[Close]

BLAST of Csor.00g109190 vs. ExPASy TrEMBL
Match: A0A6J1K468 (mitochondrial dicarboxylate/tricarboxylate transporter DTC-like OS=Cucurbita maxima OX=3661 GN=LOC111491528 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.62e-08
Identity = 28/37 (75.68%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1  MAADWKLMSAAVWPTVKPFFNGGVSGMLATCVIQATD 37
          MA D K  SA VWPTVKPF NGG SGMLATCVIQ  D
Sbjct: 1  MADDKKSKSAGVWPTVKPFVNGGASGMLATCVIQPID 37

[Close]

BLAST of Csor.00g109190 vs. ExPASy TrEMBL
Match: A0A6J1H2C8 (mitochondrial dicarboxylate/tricarboxylate transporter DTC-like OS=Cucurbita moschata OX=3662 GN=LOC111459799 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.62e-08
Identity = 28/37 (75.68%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1  MAADWKLMSAAVWPTVKPFFNGGVSGMLATCVIQATD 37
          MA D K  SA VWPTVKPF NGG SGMLATCVIQ  D
Sbjct: 1  MADDKKSKSAGVWPTVKPFVNGGASGMLATCVIQPID 37

[Close]

BLAST of Csor.00g109190 vs. ExPASy TrEMBL
Match: A0A0D2MPE8 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G154700 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.21e-08
Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1  MAADWKLMSAAVWPTVKPFFNGGVSGMLATCVIQATD 37
          MA + K  SA VWPTVKPF NGG SGMLATCVIQ  D
Sbjct: 1  MAEEKKAQSAGVWPTVKPFVNGGASGMLATCVIQPID 37

[Close]

BLAST of Csor.00g109190 vs. ExPASy TrEMBL
Match: A0A2P5YEF7 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A03G030200v1 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.23e-08
Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1  MAADWKLMSAAVWPTVKPFFNGGVSGMLATCVIQATD 37
          MA + K  SA VWPTVKPF NGG SGMLATCVIQ  D
Sbjct: 1  MAEEKKAQSAGVWPTVKPFVNGGASGMLATCVIQPID 37

[Close]

BLAST of Csor.00g109190 vs. TAIR 10
Match: AT5G19760.1 (Mitochondrial substrate carrier family protein )

HSP 1 Score: 50.1 bits (118), Expect = 9.7e-07
Identity = 23/35 (65.71%), Postives = 25/35 (71.43%), Query Frame = 0


Query: 3  ADWKLMSAAVWPTVKPFFNGGVSGMLATCVIQATD 38
          A+ K    +VW TVKPF NGG SGMLATCVIQ  D
Sbjct: 2  AEEKKAPISVWTTVKPFVNGGASGMLATCVIQPID 36

The following BLAST results are available for this feature:

BLAST of Csor.00g109190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5M0	1.4e-05	65.71	Mitochondrial dicarboxylate/tricarboxylate transporter DTC OS=Arabidopsis thalia...	[more]

BLAST of Csor.00g109190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570312.1	2.34e-49	100.00	Mitochondrial dicarboxylate/tricarboxylate transporter DTC, partial [Cucurbita a...	[more]
MBA0582747.1	1.80e-08	72.97	hypothetical protein [Gossypium raimondii]	[more]
XP_022958632.1	3.34e-08	75.68	mitochondrial dicarboxylate/tricarboxylate transporter DTC-like [Cucurbita mosch...	[more]
KAG7035792.1	3.78e-08	75.68	Mitochondrial dicarboxylate/tricarboxylate transporter DTC, partial [Cucurbita a...	[more]
KJB20577.1	4.56e-08	72.97	hypothetical protein B456_003G154700 [Gossypium raimondii]	[more]

BLAST of Csor.00g109190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J8P0H5	8.72e-09	72.97	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=Gorai_024880 PE=3 SV=...	[more]
A0A6J1K468	1.62e-08	75.68	mitochondrial dicarboxylate/tricarboxylate transporter DTC-like OS=Cucurbita max...	[more]
A0A6J1H2C8	1.62e-08	75.68	mitochondrial dicarboxylate/tricarboxylate transporter DTC-like OS=Cucurbita mos...	[more]
A0A0D2MPE8	2.21e-08	72.97	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G154700 PE=3 ...	[more]
A0A2P5YEF7	2.23e-08	72.97	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A03G030200v1 PE...	[more]

BLAST of Csor.00g109190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19760.1	9.7e-07	65.71	Mitochondrial substrate carrier family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g109190.m01	Csor.00g109190.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006835	dicarboxylic acid transport
biological_process	GO:0015849	organic acid transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0015367	oxoglutarate:malate antiporter activity