Csor.00g108520 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g108520
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionKrueppel-like factor
LocationCsor_Chr06: 7753623 .. 7754470 (+)
RNA-Seq ExpressionCsor.00g108520
SyntenyCsor.00g108520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAAGAGGCAAAAGACCCTTTCAAGGGAGTCGATTGGAAAGCCGTGGGTGGCGATATGCAGAAAGATCCCAGCTCTATAAACATTTTAAAGAAAAGGCGTCCAACAAAAGTTAGGCAAATTCCAGAGTATTATTTTCTTCCTAGAAGATCCCTTCCCTCGGTCCTTGCATTCTATGGGGCGTGTATTGCAGGTGGAATTGGAGCTGGGATGCTGGTGGAGATATGGATTAAGGATAAAGTTAAAAGTAAGCTTTGAATTTGCTTTTAATAGTCTTACTTCATAATCCTAGCAATACCATTAACCTTATCCATAATTCGTAGCTTTTTTATTTCCTCTGTTTTTCTTTTAGTTAAATTATCGATAGGTTTCTCAAACTTGGAAAAGACCTTTAGAAGTGTCCGATACGATAGATATTTAAACTTTCAATCTTGTGTCCAATAGAACCTACTCGACATAAAATTGAAACTTTAAAATCATTCGTGCTTTTTAAAATTTATGATCCTACATGACATGAAATTGAAATTTTAAAGTCTTCATTCAATTCTATATCTAATTGATCAATTAGTTTATTAAATTTTCAAATATGTTAGGGACATATAAGAAACTAAATGGAAAATTCAAGAGCCTACTCGATATTTCTAAAATTAAGGGACCTATTAGATACACTTTTTTATGTAAAAAAATGTCTTGAACACAAATTGATAGTTCAATGACAAAATCTATGACTTAACATTTTCTTTTTGATGTGTATAAGAAATAGACAGTGTGATTGACTATTGAAGTTTCTTTTTCGATGTGTTCTTGCAGAGGATGGAGGTGTGGTCTGGGAGTTTGACAAGTAG

mRNA sequence

ATGGCAGAAGAGGCAAAAGACCCTTTCAAGGGAGTCGATTGGAAAGCCGTGGGTGGCGATATGCAGAAAGATCCCAGCTCTATAAACATTTTAAAGAAAAGGCGTCCAACAAAAGTTAGGCAAATTCCAGAGTATTATTTTCTTCCTAGAAGATCCCTTCCCTCGGTCCTTGCATTCTATGGGGCGTGTATTGCAGGTGGAATTGGAGCTGGGATGCTGGTGGAGATATGGATTAAGGATAAAGTTAAAAAGGATGGAGGTGTGGTCTGGGAGTTTGACAAGTAG

Coding sequence (CDS)

ATGGCAGAAGAGGCAAAAGACCCTTTCAAGGGAGTCGATTGGAAAGCCGTGGGTGGCGATATGCAGAAAGATCCCAGCTCTATAAACATTTTAAAGAAAAGGCGTCCAACAAAAGTTAGGCAAATTCCAGAGTATTATTTTCTTCCTAGAAGATCCCTTCCCTCGGTCCTTGCATTCTATGGGGCGTGTATTGCAGGTGGAATTGGAGCTGGGATGCTGGTGGAGATATGGATTAAGGATAAAGTTAAAAAGGATGGAGGTGTGGTCTGGGAGTTTGACAAGTAG

Protein sequence

MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK
Homology
BLAST of Csor.00g108520 vs. NCBI nr
Match: XP_022942020.1 (uncharacterized protein LOC111447184 [Cucurbita moschata] >KAG6597065.1 hypothetical protein SDJN03_10245, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028536.1 hypothetical protein SDJN02_09717 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197 bits (501), Expect = 1.08e-63
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60
          MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60

Query: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94
          GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

BLAST of Csor.00g108520 vs. NCBI nr
Match: XP_023522177.1 (uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195 bits (496), Expect = 6.28e-63
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0

Query: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60
          MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60

Query: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94
          GACIAGGIGAGMLVEIWI DKVKKDGGVVWEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWINDKVKKDGGVVWEFDK 94

BLAST of Csor.00g108520 vs. NCBI nr
Match: XP_022975548.1 (uncharacterized protein LOC111475080 [Cucurbita maxima])

HSP 1 Score: 194 bits (493), Expect = 1.80e-62
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0

Query: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60
          MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSL SVLAFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFY 60

Query: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94
          GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

BLAST of Csor.00g108520 vs. NCBI nr
Match: XP_004133805.1 (uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hypothetical protein Csa_009724 [Cucumis sativus])

HSP 1 Score: 179 bits (455), Expect = 1.50e-56
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 0

Query: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGAC 63
           E KDP KGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPSV+AFYGAC
Sbjct: 13  EQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGAC 72

Query: 64  IAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94
           IAGGIGAGMLVEIWI DK+KKDGGV+WEFDK
Sbjct: 73  IAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

BLAST of Csor.00g108520 vs. NCBI nr
Match: XP_008437869.1 (PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo] >KAA0048876.1 uncharacterized protein E6C27_scaffold171G00910 [Cucumis melo var. makuwa] >TYK20827.1 uncharacterized protein E5676_scaffold291G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (447), Expect = 2.49e-55
Identity = 79/91 (86.81%), Postives = 86/91 (94.51%), Query Frame = 0

Query: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGAC 63
           E KDPFKGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRR LP V+AFYGAC
Sbjct: 13  EQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYGAC 72

Query: 64  IAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94
           IAGGIGAGMLVE+WI DK+KKDGGV+WEFDK
Sbjct: 73  IAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

BLAST of Csor.00g108520 vs. ExPASy TrEMBL
Match: A0A6J1FVE8 (uncharacterized protein LOC111447184 OS=Cucurbita moschata OX=3662 GN=LOC111447184 PE=4 SV=1)

HSP 1 Score: 197 bits (501), Expect = 5.25e-64
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60
          MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60

Query: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94
          GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

BLAST of Csor.00g108520 vs. ExPASy TrEMBL
Match: A0A6J1IJJ2 (uncharacterized protein LOC111475080 OS=Cucurbita maxima OX=3661 GN=LOC111475080 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 8.73e-63
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0

Query: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60
          MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSL SVLAFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFY 60

Query: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94
          GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

BLAST of Csor.00g108520 vs. ExPASy TrEMBL
Match: A0A0A0L8I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1)

HSP 1 Score: 179 bits (455), Expect = 7.27e-57
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 0

Query: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGAC 63
           E KDP KGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPSV+AFYGAC
Sbjct: 13  EQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGAC 72

Query: 64  IAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94
           IAGGIGAGMLVEIWI DK+KKDGGV+WEFDK
Sbjct: 73  IAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

BLAST of Csor.00g108520 vs. ExPASy TrEMBL
Match: A0A5D3DB39 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00890 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 1.21e-55
Identity = 79/91 (86.81%), Postives = 86/91 (94.51%), Query Frame = 0

Query: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGAC 63
           E KDPFKGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRR LP V+AFYGAC
Sbjct: 13  EQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYGAC 72

Query: 64  IAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94
           IAGGIGAGMLVE+WI DK+KKDGGV+WEFDK
Sbjct: 73  IAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

BLAST of Csor.00g108520 vs. ExPASy TrEMBL
Match: A0A1S3AV52 (uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 1.21e-55
Identity = 79/91 (86.81%), Postives = 86/91 (94.51%), Query Frame = 0

Query: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGAC 63
           E KDPFKGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRR LP V+AFYGAC
Sbjct: 13  EQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYGAC 72

Query: 64  IAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94
           IAGGIGAGMLVE+WI DK+KKDGGV+WEFDK
Sbjct: 73  IAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

BLAST of Csor.00g108520 vs. TAIR 10
Match: AT5G16950.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-19
Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 2  AEEAKDPFKGVDWKAVGGDMQKDPSS----INILKKRRPTKVRQIPEYYFLPRRSLPSVL 61
          +E AKDP+KG +W       +K  +S    +   +K+ P  +    E YFLPR+  P  L
Sbjct: 3  SEGAKDPWKGEEWGTENEKTKKPTTSGVKTVTRARKQIPRGLEDKYEAYFLPRKPWPRAL 62

Query: 62 AFYGACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          A+YG+ I GGIGAGM++E WI  KVK+DGGV+WEFDK
Sbjct: 63 AYYGSFILGGIGAGMVIEAWINKKVKEDGGVIWEFDK 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022942020.11.08e-63100.00uncharacterized protein LOC111447184 [Cucurbita moschata] >KAG6597065.1 hypothet... [more]
XP_023522177.16.28e-6398.94uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo][more]
XP_022975548.11.80e-6298.94uncharacterized protein LOC111475080 [Cucurbita maxima][more]
XP_004133805.11.50e-5689.01uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hypothetical ... [more]
XP_008437869.12.49e-5586.81PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo] >KAA0048876.1 unc... [more]
Match NameE-valueIdentityDescription
A0A6J1FVE85.25e-64100.00uncharacterized protein LOC111447184 OS=Cucurbita moschata OX=3662 GN=LOC1114471... [more]
A0A6J1IJJ28.73e-6398.94uncharacterized protein LOC111475080 OS=Cucurbita maxima OX=3661 GN=LOC111475080... [more]
A0A0A0L8I77.27e-5789.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1[more]
A0A5D3DB391.21e-5586.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AV521.21e-5586.81uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=... [more]
Match NameE-valueIdentityDescription
AT5G16950.11.2e-1947.42unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36797OS01G0258600 PROTEINcoord: 2..94
NoneNo IPR availablePANTHERPTHR36797:SF3OS01G0258600 PROTEINcoord: 2..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g108520.m01Csor.00g108520.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane