Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATCTTCCTCGTTTTGGTCGAACATGGAACCGTTTCTCTTCGCTGCCCCGCCCTGGCACGGCCCCACGGCTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTATCCATCGGCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCCAGCACTTCGCCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGAGCAGTGCTTTAGCTTCTCCCAAAACGTTCAAAACTACTTATACCTCTCCGCCACGATCACCGGCGAAGCATAAATATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAATGGTTCGACCCAGGAGCCCACCGGAGGTTAGTTCCATCACCATTAAAATACCTTATTTAATCAATTATAATTTATATTTAATTTATTTTTATATACATTCTTGTCACTTTTCTTGATAAGAATATAATATAATAATTTAACCTTTGACACAAAAATTTATATTTCTTAATTAATAATTGAACTATACTTTTTTTCTGCCAAAACATGGAGGACTTTAATATGTACATTGTACTTTCTTAATTAATTAACATATATACATATATATATATATATATATATATATATATATATATATATATATGTATATGCATATCAAAAATGTAAGAGTCTTGTTTTTTTCGATCTTACAATCCACCTTCTTTGTGGTCCAGCGTTCTCGCTAACACTCGTTCACTTTTTTAATCGATGTGGGACCCTCCCAATTCATCTCATTCGAGGCTCGTTGCTGGGCACATCGCCTCGTGTTTACCCCATTCCAATCGATGTGAGACTCCTCCCAATCCACCTCTTTCAAGGCCCAACGTCTTTGCTGGCACACTGCCTTGTGTCCAACCCCTTTGGAGTTTAGCATTCTAGTTGGCACATCACCAAAAGTGTTTTGTTCTTCTACCCAACCGATGTCGAATCTCACAATCCACTCTCTTTCAAGACCCAGCATTCTCGCTGGCACTTGTTTCCTTCTCTAATCGATGTGGGACCCTCCTAATCCACCCTTCAGGGCCCAGTATCTTTGTTGGCACTCGTTCCCTTCTCTAATCGATGTGAGACCCTCCCAATCCACTCTCTTCAAGGCCCAACATCCTCGCTGGCACTTGTTACCTTCTCTAATCGATGTGGGACCCTCTCAATCCACCCCCTTCGGGACCCAGTGTCTTTGTTGGCACACTACCTCGTGTTGACCCCCTTTCAGGGTTCAGCCTTCTCGCTGGCACATAGCTCGGTATCTATCTCTGATACCAACTATAACAGTCCAAACCCACCGCTAGCATATATTGTCTTATCGAGAGATTTCCACTCTTATAAAGAATGTTTGTTCTCCTTCCTAACAGTTCTGGGATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAACTAGGATTTATTTTTTCCGTCTTAGTGTTATGATCTTATATTGTTAAACAGGTCCAGCAGAAATCCGTCCTTTACCAGAAGACAACTAGCGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAACAAACGCATCAGCAGCAAAGTGATGTTATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCGAGGCACTGA
mRNA sequence
ATGGCAAATCTTCCTCGTTTTGGTCGAACATGGAACCGTTTCTCTTCGCTGCCCCGCCCTGGCACGGCCCCACGGCTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTATCCATCGGCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCCAGCACTTCGCCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGAGCAGTGCTTTAGCTTCTCCCAAAACGTTCAAAACTACTTATACCTCTCCGCCACGATCACCGGCGAAGCATAAATATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAATGGTTCGACCCAGGAGCCCACCGGAGGTCCAGCAGAAATCCGTCCTTTACCAGAAGACAACTAGCGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAACAAACGCATCAGCAGCAAAGTGATGTTATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCGAGGCACTGA
Coding sequence (CDS)
ATGGCAAATCTTCCTCGTTTTGGTCGAACATGGAACCGTTTCTCTTCGCTGCCCCGCCCTGGCACGGCCCCACGGCTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTATCCATCGGCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCCAGCACTTCGCCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGAGCAGTGCTTTAGCTTCTCCCAAAACGTTCAAAACTACTTATACCTCTCCGCCACGATCACCGGCGAAGCATAAATATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAATGGTTCGACCCAGGAGCCCACCGGAGGTCCAGCAGAAATCCGTCCTTTACCAGAAGACAACTAGCGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAACAAACGCATCAGCAGCAAAGTGATGTTATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCGAGGCACTGA
Protein sequence
MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSPRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH
Homology
BLAST of Csor.00g108450 vs. NCBI nr
Match:
KAG6597058.1 (hypothetical protein SDJN03_10238, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 583 bits (1503), Expect = 1.51e-209
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0
Query: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP
Sbjct: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
Query: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT
Sbjct: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
Query: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
Query: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH
Sbjct: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
Query: 301 DSRH 304
DSRH
Sbjct: 301 DSRH 304
BLAST of Csor.00g108450 vs. NCBI nr
Match:
XP_022945677.1 (DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata])
HSP 1 Score: 582 bits (1499), Expect = 6.13e-209
Identity = 303/304 (99.67%), Postives = 304/304 (100.00%), Query Frame = 0
Query: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP
Sbjct: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
Query: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT
Sbjct: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEP+VRPRSPPEVQQKSVLYQKTTSEK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTSEK 180
Query: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
Query: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH
Sbjct: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
Query: 301 DSRH 304
DSRH
Sbjct: 301 DSRH 304
BLAST of Csor.00g108450 vs. NCBI nr
Match:
XP_023538835.1 (proline-rich extensin-like protein EPR1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 573 bits (1476), Expect = 1.96e-205
Identity = 298/304 (98.03%), Postives = 300/304 (98.68%), Query Frame = 0
Query: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAA SEPEVYP PRTANVLQTSPIKERSP
Sbjct: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAAASEPEVYPPPPRTANVLQTSPIKERSP 60
Query: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
RI SPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERR+SALASPKTFKTTYT
Sbjct: 61 RIPSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRTSALASPKTFKTTYT 120
Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
SPPRSPAKHKYSTST+QAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK
Sbjct: 121 SPPRSPAKHKYSTSTLQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
Query: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
Query: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH
Sbjct: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
Query: 301 DSRH 304
DSRH
Sbjct: 301 DSRH 304
BLAST of Csor.00g108450 vs. NCBI nr
Match:
XP_022974814.1 (DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_022974815.1 DNA-directed RNA polymerase II subunit 1-like isoform X3 [Cucurbita maxima])
HSP 1 Score: 570 bits (1468), Expect = 3.26e-204
Identity = 298/304 (98.03%), Postives = 299/304 (98.36%), Query Frame = 0
Query: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
MANLPRFGRTWNRFSSLPRP TAPR DVPPPAATSEPEV+ SAP TANVLQTSPIKERSP
Sbjct: 1 MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
Query: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSA ASPKTFKTTYT
Sbjct: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
Query: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
Query: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH
Sbjct: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
Query: 301 DSRH 304
DSRH
Sbjct: 301 DSRH 304
BLAST of Csor.00g108450 vs. NCBI nr
Match:
XP_022974813.1 (DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita maxima])
HSP 1 Score: 566 bits (1459), Expect = 7.66e-203
Identity = 297/304 (97.70%), Postives = 298/304 (98.03%), Query Frame = 0
Query: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
MANLPRFGRTWNRFSSLPRP TAPR DVPPPAATSEPEV+ SAP TANVLQTSPIKERSP
Sbjct: 1 MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
Query: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
RITSPVRKY SPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSA ASPKTFKTTYT
Sbjct: 61 RITSPVRKYHSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
Query: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
Query: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH
Sbjct: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
Query: 301 DSRH 304
DSRH
Sbjct: 301 DSRH 304
BLAST of Csor.00g108450 vs. ExPASy TrEMBL
Match:
A0A6J1G1L2 (DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=LOC111449836 PE=4 SV=1)
HSP 1 Score: 582 bits (1499), Expect = 2.97e-209
Identity = 303/304 (99.67%), Postives = 304/304 (100.00%), Query Frame = 0
Query: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP
Sbjct: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
Query: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT
Sbjct: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEP+VRPRSPPEVQQKSVLYQKTTSEK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTSEK 180
Query: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
Query: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH
Sbjct: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
Query: 301 DSRH 304
DSRH
Sbjct: 301 DSRH 304
BLAST of Csor.00g108450 vs. ExPASy TrEMBL
Match:
A0A6J1IEX0 (DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111473598 PE=4 SV=1)
HSP 1 Score: 570 bits (1468), Expect = 1.58e-204
Identity = 298/304 (98.03%), Postives = 299/304 (98.36%), Query Frame = 0
Query: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
MANLPRFGRTWNRFSSLPRP TAPR DVPPPAATSEPEV+ SAP TANVLQTSPIKERSP
Sbjct: 1 MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
Query: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSA ASPKTFKTTYT
Sbjct: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
Query: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
Query: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH
Sbjct: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
Query: 301 DSRH 304
DSRH
Sbjct: 301 DSRH 304
BLAST of Csor.00g108450 vs. ExPASy TrEMBL
Match:
A0A6J1IHF4 (DNA-directed RNA polymerase II subunit 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473598 PE=4 SV=1)
HSP 1 Score: 566 bits (1459), Expect = 3.71e-203
Identity = 297/304 (97.70%), Postives = 298/304 (98.03%), Query Frame = 0
Query: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
MANLPRFGRTWNRFSSLPRP TAPR DVPPPAATSEPEV+ SAP TANVLQTSPIKERSP
Sbjct: 1 MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
Query: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
RITSPVRKY SPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSA ASPKTFKTTYT
Sbjct: 61 RITSPVRKYHSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
Query: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
Query: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH
Sbjct: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
Query: 301 DSRH 304
DSRH
Sbjct: 301 DSRH 304
BLAST of Csor.00g108450 vs. ExPASy TrEMBL
Match:
A0A5A7TZ60 (Microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00750 PE=4 SV=1)
HSP 1 Score: 400 bits (1028), Expect = 1.87e-137
Identity = 218/309 (70.55%), Postives = 254/309 (82.20%), Query Frame = 0
Query: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPP-AATSEPEVYPSAPRTANVLQTSPIKERS 60
M+NLPRFGRTWNRFSSLPRP TA R + P A +EPEV+PSA T N LQTSP+K+R+
Sbjct: 1 MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60
Query: 61 PRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTY 120
PR++SPV+K+PSPP+SPKY A + SPRKPLSPP TYNR+DGERR+SA SPKTFK TY
Sbjct: 61 PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120
Query: 121 TSPPRSPAKHKYSTS-TVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTS 180
SPP SP K K+ST+ TV APLSPLALP E R EPE +RPRSPPE++QK +LYQ TT+
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180
Query: 181 EKPAKTDHRASE-YSSGKPQQKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKKKP 240
EKP KTD+R ++ Y + KPQQKQ HQQ QSDVINIKG+NVGAVMHITQSSD +E KKKP
Sbjct: 181 EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP 240
Query: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKK-PTH 300
+V S ENE+ +NKS+SN PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLA++ K P H
Sbjct: 241 SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH 300
Query: 301 ADSVHDSRH 304
DS+H+SRH
Sbjct: 301 GDSIHESRH 309
BLAST of Csor.00g108450 vs. ExPASy TrEMBL
Match:
A0A1S3AVJ6 (microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=3656 GN=LOC103483157 PE=4 SV=1)
HSP 1 Score: 400 bits (1028), Expect = 1.87e-137
Identity = 218/309 (70.55%), Postives = 254/309 (82.20%), Query Frame = 0
Query: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPP-AATSEPEVYPSAPRTANVLQTSPIKERS 60
M+NLPRFGRTWNRFSSLPRP TA R + P A +EPEV+PSA T N LQTSP+K+R+
Sbjct: 1 MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60
Query: 61 PRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTY 120
PR++SPV+K+PSPP+SPKY A + SPRKPLSPP TYNR+DGERR+SA SPKTFK TY
Sbjct: 61 PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120
Query: 121 TSPPRSPAKHKYSTS-TVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTS 180
SPP SP K K+ST+ TV APLSPLALP E R EPE +RPRSPPE++QK +LYQ TT+
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180
Query: 181 EKPAKTDHRASE-YSSGKPQQKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKKKP 240
EKP KTD+R ++ Y + KPQQKQ HQQ QSDVINIKG+NVGAVMHITQSSD +E KKKP
Sbjct: 181 EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP 240
Query: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKK-PTH 300
+V S ENE+ +NKS+SN PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLA++ K P H
Sbjct: 241 SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH 300
Query: 301 ADSVHDSRH 304
DS+H+SRH
Sbjct: 301 GDSIHESRH 309
BLAST of Csor.00g108450 vs. TAIR 10
Match:
AT2G46630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). )
HSP 1 Score: 73.2 bits (178), Expect = 4.1e-13
Identity = 105/364 (28.85%), Postives = 149/364 (40.93%), Query Frame = 0
Query: 18 PRPGTAPRLDVPPPAATSEP--EVYPSAPRTANVLQTSPIKERSPRITSPVRKYP----- 77
PRP + L V PPA P + P +P + P +++ P +T P +K P
Sbjct: 29 PRPTSRSSLVVRPPAKQPSPPRQRQPRSPPRQQDPPSPPRQQQQP-LTPPRQKAPPTSPP 88
Query: 78 ---SPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYTSPPR--- 137
SP SP R +P T P+ PPP RSS + P + PPR
Sbjct: 89 QERSPYHSPPSRHMSPPTPPKAATPPPP-------PPRSSYTSPPSPKEVQEALPPRKPN 148
Query: 138 SPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSP-----------PEVQQKSVLY 197
SP +S+ + + PS + H P R SP E QK++L
Sbjct: 149 SPPSPAHSSRSTTSESVKTRSPSESENHRKAPSPRVLSPYSLPASLLHSERETTQKNILT 208
Query: 198 QKTTSEKPAKTDHRAS---------------EYSSGKPQQ----KQTHQQQSD------- 257
+ TS+ H + Y+ + Q K+ H+Q S
Sbjct: 209 AEKTSQTHETNHHNQNHNHDYNQNHNYNQNHSYNQNQNHQGNNPKKMHRQPSSSDSENIM 268
Query: 258 ---VINIKGENVGAVMHITQSSDATET-----------------HKKKPTVSYSSENEKD 303
VI I GEN GAVM I +S +T ++ + S SS +E +
Sbjct: 269 STRVITIAGENKGAVMEILRSPQGNKTGGSGTHSSRVSHGTGEKGRRLQSSSSSSSDEGE 328
BLAST of Csor.00g108450 vs. TAIR 10
Match:
AT1G75260.1 (oxidoreductases, acting on NADH or NADPH )
HSP 1 Score: 43.1 bits (100), Expect = 4.6e-04
Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = 0
Query: 208 VINIKGENVGAVMHITQSSDAT--ETH----------KKKPTVSYSSENEKDSNKSSSNM 267
V + GEN GA M I D E H + T + +EN KD +++
Sbjct: 345 VYTLTGENKGATMGIGSEKDKKDGEVHIRRGYRSNPDESSNTTATETENPKD-DEAEEEA 404
Query: 268 PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF 290
+++N N QG+NNSI+ SS+S DPG+H++F
Sbjct: 405 SFTAYINGNTQGINNSIVVESSVSENDPGVHMSF 437
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6597058.1 | 1.51e-209 | 100.00 | hypothetical protein SDJN03_10238, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022945677.1 | 6.13e-209 | 99.67 | DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata] | [more] |
XP_023538835.1 | 1.96e-205 | 98.03 | proline-rich extensin-like protein EPR1 [Cucurbita pepo subsp. pepo] | [more] |
XP_022974814.1 | 3.26e-204 | 98.03 | DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_... | [more] |
XP_022974813.1 | 7.66e-203 | 97.70 | DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1G1L2 | 2.97e-209 | 99.67 | DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=L... | [more] |
A0A6J1IEX0 | 1.58e-204 | 98.03 | DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=... | [more] |
A0A6J1IHF4 | 3.71e-203 | 97.70 | DNA-directed RNA polymerase II subunit 1-like isoform X1 OS=Cucurbita maxima OX=... | [more] |
A0A5A7TZ60 | 1.87e-137 | 70.55 | Microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo var. m... | [more] |
A0A1S3AVJ6 | 1.87e-137 | 70.55 | microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=365... | [more] |
Match Name | E-value | Identity | Description | |
AT2G46630.1 | 4.1e-13 | 28.85 | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXP... | [more] |
AT1G75260.1 | 4.6e-04 | 34.04 | oxidoreductases, acting on NADH or NADPH | [more] |