Csor.00g108270 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g108270
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	StAR lipid transfer-like protein
Location	Csor_Chr06: 7591212 .. 7592323 (-)
RNA-Seq Expression	Csor.00g108270
Synteny	Csor.00g108270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGAACGGAGGGAGCGACGGTGGTAGCAACGCCCATTGGTGGTGGGCCTTGGCCGGCGCGACGCAGTTCGGTTGGGGTATCGCCTCTTTCCGGCGAGGAGTTATTGGCGATTCTAGCCTCATGCCCTTTAAGGCCTTCGCCGTTGCTTCGCTTTTCGTCGGCGCTGCCGCCTCGTCCGCCATCGCTTCCTTAAAGGCCGCCGGCATCCACAAGGTTTACTTCACCTTATTTCCTATTCTGCATCTAGTAGTTGCATTTCTTCTCCTTCCCTCCCCCTGATTTGGATTGGTTTAGAGGTTAATTGCGCAACTCTGATTAAGTTGGCTTTGAACTCGTGTCGTCCTCTGAAGAATTAACTCTCAAGCCAAATTTTATTCGTCGCATGTGGTGAATTCGTTTAGTTTTTAACTCTCAGTTTGATCGAAACACTGAAATTGGAAACAATTGATCGAATCAGAATTCGCGTCCATTGATTAAGAAGAAAAATATTTTTGTAGGTTTTAGATTTTTAGGTTGTGTTGGATTCTTTGCAGCTGATATTAATCATCTTGCTATTAATTTCGAGCATTTTCTCACTTAGCTTGATGTTGCTGTGAAATTCAGGTATGTTCTTGATTGAATTTAGACATTTTTTTTACATGATTTGAGCATTGATGCCATGATAGACTGAACTTATAAAAGAACTTTAGTAACGAGCATTGTTTTCATCCAATCTAATAATGGTTGCTGTTGTTGGGTAGTGGAAGAGAAATTATTTTCAGATCAGCCTCAGTTCATTGCCTTTGTAGAAATTTTCTTACTGCGTTTGTAAATCACTATCAAAATGTGTTTAAGCAGTGTTCTGATTTCTTGTTGCTCTTATGGATGAACCAAATGAAGCCATTATTGTCATTCCTCACCCAAAATCAGGGGCTTGATCTTGATTTATGTAAGAAAAAATATGTTTGGAGAAGCAATGTAATCTGGAAATTCTTGCTGAAGTCAAGTGTTTGAATACAAATTTGTGGGTTTGGTATGTTGTGTTGTATCAGGTTGAAGACGTGATGGAAGTAGGAGCTAATATCAGAACTGGTTTGGGTATTCGTCCAAGAACACGAGATGAATGA

mRNA sequence

ATGGTGGAGAACGGAGGGAGCGACGGTGGTAGCAACGCCCATTGGTGGTGGGCCTTGGCCGGCGCGACGCAGTTCGGTTGGGGTATCGCCTCTTTCCGGCGAGGAGTTATTGGCGATTCTAGCCTCATGCCCTTTAAGGCCTTCGCCGTTGCTTCGCTTTTCGTCGGCGCTGCCGCCTCGTCCGCCATCGCTTCCTTAAAGGCCGCCGGCATCCACAAGGTTGAAGACGTGATGGAAGTAGGAGCTAATATCAGAACTGGTTTGGGTATTCGTCCAAGAACACGAGATGAATGA

Coding sequence (CDS)

ATGGTGGAGAACGGAGGGAGCGACGGTGGTAGCAACGCCCATTGGTGGTGGGCCTTGGCCGGCGCGACGCAGTTCGGTTGGGGTATCGCCTCTTTCCGGCGAGGAGTTATTGGCGATTCTAGCCTCATGCCCTTTAAGGCCTTCGCCGTTGCTTCGCTTTTCGTCGGCGCTGCCGCCTCGTCCGCCATCGCTTCCTTAAAGGCCGCCGGCATCCACAAGGTTGAAGACGTGATGGAAGTAGGAGCTAATATCAGAACTGGTTTGGGTATTCGTCCAAGAACACGAGATGAATGA

Protein sequence

MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAASSAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE

Homology

[Close]

BLAST of Csor.00g108270 vs. NCBI nr
Match: KAG6597040.1 (hypothetical protein SDJN03_10220, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192 bits (489), Expect = 9.15e-62
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 60
          MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS
Sbjct: 1  MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 60

Query: 61 SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 97
          SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE
Sbjct: 61 SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 97

[Close]

BLAST of Csor.00g108270 vs. NCBI nr
Match: XP_023540026.1 (uncharacterized protein LOC111800524 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192 bits (488), Expect = 1.52e-61
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1   MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 60
           MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS
Sbjct: 6   MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 65

Query: 61  SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 97
           SAIASLKAAGIHKVEDVMEVGANIRTGLG+RPRTRDE
Sbjct: 66  SAIASLKAAGIHKVEDVMEVGANIRTGLGVRPRTRDE 102

[Close]

BLAST of Csor.00g108270 vs. NCBI nr
Match: XP_022941577.1 (uncharacterized protein LOC111446882 isoform X2 [Cucurbita moschata] >KAG7028515.1 hypothetical protein SDJN02_09696, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192 bits (489), Expect = 2.16e-61
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1   MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 60
           MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS
Sbjct: 28  MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 87

Query: 61  SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 97
           SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE
Sbjct: 88  SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 124

[Close]

BLAST of Csor.00g108270 vs. NCBI nr
Match: XP_022974845.1 (uncharacterized protein LOC111473617 isoform X1 [Cucurbita maxima] >XP_022975308.1 uncharacterized protein LOC111474468 isoform X1 [Cucurbita maxima])

HSP 1 Score: 187 bits (475), Expect = 2.95e-59
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1   MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 60
           MVENGGSDGGSNAHWWWALAGATQ GWGIASFRRGVIGDSSLMPFKAFAVASLFVGAA+S
Sbjct: 28  MVENGGSDGGSNAHWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAASS 87

Query: 61  SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 97
           SAIASLKAAGIHKVEDVMEVGANIR GLGIRPRTRDE
Sbjct: 88  SAIASLKAAGIHKVEDVMEVGANIRNGLGIRPRTRDE 124

[Close]

BLAST of Csor.00g108270 vs. NCBI nr
Match: XP_022145350.1 (uncharacterized protein LOC111014824 [Momordica charantia])

HSP 1 Score: 172 bits (436), Expect = 1.08e-53
Identity = 84/96 (87.50%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 2  VENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAASS 61
          +E+ G DGGSNAHWWWALAGATQFGWGIASFRRG IG+SSLMPFKAFAVASLFVGAAASS
Sbjct: 1  MEDNGGDGGSNAHWWWALAGATQFGWGIASFRRGFIGNSSLMPFKAFAVASLFVGAAASS 60

Query: 62 AIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 97
          AIASLKA+GIHKVEDVME+GA+IR+GLG+RPR RDE
Sbjct: 61 AIASLKASGIHKVEDVMEIGASIRSGLGVRPRARDE 96

[Close]

BLAST of Csor.00g108270 vs. ExPASy TrEMBL
Match: A0A6J1FMU0 (uncharacterized protein LOC111446882 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446882 PE=4 SV=1)

HSP 1 Score: 192 bits (489), Expect = 1.05e-61
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1   MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 60
           MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS
Sbjct: 28  MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 87

Query: 61  SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 97
           SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE
Sbjct: 88  SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 124

[Close]

BLAST of Csor.00g108270 vs. ExPASy TrEMBL
Match: A0A6J1IIU1 (uncharacterized protein LOC111473617 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111474468 PE=4 SV=1)

HSP 1 Score: 187 bits (475), Expect = 1.43e-59
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1   MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 60
           MVENGGSDGGSNAHWWWALAGATQ GWGIASFRRGVIGDSSLMPFKAFAVASLFVGAA+S
Sbjct: 28  MVENGGSDGGSNAHWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAASS 87

Query: 61  SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 97
           SAIASLKAAGIHKVEDVMEVGANIR GLGIRPRTRDE
Sbjct: 88  SAIASLKAAGIHKVEDVMEVGANIRNGLGIRPRTRDE 124

[Close]

BLAST of Csor.00g108270 vs. ExPASy TrEMBL
Match: A0A6J1CU84 (uncharacterized protein LOC111014824 OS=Momordica charantia OX=3673 GN=LOC111014824 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 5.24e-54
Identity = 84/96 (87.50%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 2  VENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAASS 61
          +E+ G DGGSNAHWWWALAGATQFGWGIASFRRG IG+SSLMPFKAFAVASLFVGAAASS
Sbjct: 1  MEDNGGDGGSNAHWWWALAGATQFGWGIASFRRGFIGNSSLMPFKAFAVASLFVGAAASS 60

Query: 62 AIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 97
          AIASLKA+GIHKVEDVME+GA+IR+GLG+RPR RDE
Sbjct: 61 AIASLKASGIHKVEDVMEIGASIRSGLGVRPRARDE 96

[Close]

BLAST of Csor.00g108270 vs. ExPASy TrEMBL
Match: A0A1S3AUW2 (uncharacterized protein LOC103483131 OS=Cucumis melo OX=3656 GN=LOC103483131 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 2.07e-50
Identity = 82/97 (84.54%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1   MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 60
           M ENGGSDGGSNAHWWWA AGA Q GWGIASFRRG +GDSS MP KAFAVASLFVGAAAS
Sbjct: 29  MEENGGSDGGSNAHWWWAFAGAGQLGWGIASFRRGFVGDSSTMPLKAFAVASLFVGAAAS 88

Query: 61  SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 97
           SAIASLKA+GIHKVEDVMEVGA IR+GLGIR R +D+
Sbjct: 89  SAIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 125

[Close]

BLAST of Csor.00g108270 vs. ExPASy TrEMBL
Match: A0A6J1E8F9 (uncharacterized protein LOC111431802 OS=Cucurbita moschata OX=3662 GN=LOC111431802 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 5.26e-50
Identity = 81/97 (83.51%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1   MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 60
           M ENGGSDG SNAHWWWAL GATQ GWGIASFRRG+IG+SSLMP KAFAVASLFVG  AS
Sbjct: 14  MEENGGSDGVSNAHWWWALPGATQLGWGIASFRRGLIGNSSLMPLKAFAVASLFVGGGAS 73

Query: 61  SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 97
            AIASLKA+GIHKVED+MEVGA+IR+GLGIRPR +DE
Sbjct: 74  CAIASLKASGIHKVEDMMEVGASIRSGLGIRPRPQDE 110

[Close]

BLAST of Csor.00g108270 vs. TAIR 10
Match: AT3G60480.1 (unknown protein; Has 17 Blast hits to 17 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.9 bits (250), Expect = 5.9e-22
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 3   ENGGSDGGSNA------HWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVG 62
           +N G+  G ++      HWWWAL    Q  WGI   RRG  GD  LMP KAF VASLFVG
Sbjct: 4   QNAGTGAGESSLLDGSGHWWWALGSGAQIMWGIRLIRRGYAGDVRLMPLKAFGVASLFVG 63

Query: 63  AAASSAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 98
           + A+S++A ++A GIH V+D +++GANIRT LG+ P+  D+
Sbjct: 64  SLATSSVALVRATGIHTVQDAIDLGANIRTNLGVTPQIPDK 104

The following BLAST results are available for this feature:

BLAST of Csor.00g108270 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g108270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597040.1	9.15e-62	100.00	hypothetical protein SDJN03_10220, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023540026.1	1.52e-61	98.97	uncharacterized protein LOC111800524 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022941577.1	2.16e-61	100.00	uncharacterized protein LOC111446882 isoform X2 [Cucurbita moschata] >KAG7028515...	[more]
XP_022974845.1	2.95e-59	96.91	uncharacterized protein LOC111473617 isoform X1 [Cucurbita maxima] >XP_022975308...	[more]
XP_022145350.1	1.08e-53	87.50	uncharacterized protein LOC111014824 [Momordica charantia]	[more]

BLAST of Csor.00g108270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FMU0	1.05e-61	100.00	uncharacterized protein LOC111446882 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IIU1	1.43e-59	96.91	uncharacterized protein LOC111473617 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1CU84	5.24e-54	87.50	uncharacterized protein LOC111014824 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A1S3AUW2	2.07e-50	84.54	uncharacterized protein LOC103483131 OS=Cucumis melo OX=3656 GN=LOC103483131 PE=...	[more]
A0A6J1E8F9	5.26e-50	83.51	uncharacterized protein LOC111431802 OS=Cucurbita moschata OX=3662 GN=LOC1114318...	[more]

BLAST of Csor.00g108270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60480.1	5.9e-22	49.50	unknown protein; Has 17 Blast hits to 17 proteins in 8 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37744	STAR LIPID TRANSFER-LIKE PROTEIN	coord: 2..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g108270.m02	Csor.00g108270.m02	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane