Csor.00g108250 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g108250
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Phosphoglycerate mutase family protein
Location	Csor_Chr06: 7561807 .. 7562127 (+)
RNA-Seq Expression	Csor.00g108250
Synteny	Csor.00g108250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAACCAATGAAGCAATCAGGCCTAATGTTGAACCAAAGGATAGGAACTGGGATTTCGATATCCCTCAGCTTGAAGCCATTTTACCCGTCGGGACGGTTGACCATTCTATAGAACGTGTCTATAAAGAGGTATGTAAACAAAATCGTTATCAAACGAAGCTTCAACCCGTTTAAGTAAACAATGTTTCTCGAAAACTTCAGATGCTTCCATGGGAAGGATCAGCAGCAGTTACTCATCGTCGGTACATCCAACTATTCCATACGCTTTCCGATAAATACCCGACGGAGAACTTGCTACTTGTCACACATGGTAAGTAG

mRNA sequence

ATGCTAACCAATGAAGCAATCAGGCCTAATGTTGAACCAAAGGATAGGAACTGGGATTTCGATATCCCTCAGCTTGAAGCCATTTTACCCGTCGGGACGGTTGACCATTCTATAGAACGTGTCTATAAAGAGATGCTTCCATGGGAAGGATCAGCAGCAGTTACTCATCGTCGGTACATCCAACTATTCCATACGCTTTCCGATAAATACCCGACGGAGAACTTGCTACTTGTCACACATGGTAAGTAG

Coding sequence (CDS)

ATGCTAACCAATGAAGCAATCAGGCCTAATGTTGAACCAAAGGATAGGAACTGGGATTTCGATATCCCTCAGCTTGAAGCCATTTTACCCGTCGGGACGGTTGACCATTCTATAGAACGTGTCTATAAAGAGATGCTTCCATGGGAAGGATCAGCAGCAGTTACTCATCGTCGGTACATCCAACTATTCCATACGCTTTCCGATAAATACCCGACGGAGAACTTGCTACTTGTCACACATGGTAAGTAG

Protein sequence

MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYIQLFHTLSDKYPTENLLLVTHGK

Homology

[Close]

BLAST of Csor.00g108250 vs. NCBI nr
Match: KAG6597038.1 (hypothetical protein SDJN03_10218, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177 bits (448), Expect = 5.57e-56
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI 60
          MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI
Sbjct: 1  MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI 60

Query: 61 QLFHTLSDKYPTENLLLVTHGK 82
          QLFHTLSDKYPTENLLLVTHGK
Sbjct: 61 QLFHTLSDKYPTENLLLVTHGK 82

[Close]

BLAST of Csor.00g108250 vs. NCBI nr
Match: KAG6597037.1 (hypothetical protein SDJN03_10217, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174 bits (440), Expect = 6.68e-54
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI 60
          MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRY+
Sbjct: 1  MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYV 60

Query: 61 QLFHTLSDKYPTENLLLVTHGK 82
          QLFHTL+DKYPTENLLLVTHG+
Sbjct: 61 QLFHTLADKYPTENLLLVTHGE 82

[Close]

BLAST of Csor.00g108250 vs. NCBI nr
Match: XP_022944754.1 (uncharacterized protein LOC111449111 [Cucurbita moschata])

HSP 1 Score: 174 bits (440), Expect = 2.36e-52
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI 60
           MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRY+
Sbjct: 118 MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYV 177

Query: 61  QLFHTLSDKYPTENLLLVTHGK 82
           QLFHTL+DKYPTENLLLVTHG+
Sbjct: 178 QLFHTLADKYPTENLLLVTHGE 199

[Close]

BLAST of Csor.00g108250 vs. NCBI nr
Match: KAG6597036.1 (hypothetical protein SDJN03_10216, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028513.1 hypothetical protein SDJN02_09694 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174 bits (440), Expect = 2.36e-52
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI 60
           MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRY+
Sbjct: 118 MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYV 177

Query: 61  QLFHTLSDKYPTENLLLVTHGK 82
           QLFHTL+DKYPTENLLLVTHG+
Sbjct: 178 QLFHTLADKYPTENLLLVTHGE 199

[Close]

BLAST of Csor.00g108250 vs. NCBI nr
Match: XP_023540071.1 (uncharacterized protein LOC111800554 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172 bits (435), Expect = 1.35e-51
Identity = 78/82 (95.12%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI 60
           MLTNEAIRPNVEPKDRNWDF+IPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRY+
Sbjct: 118 MLTNEAIRPNVEPKDRNWDFNIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYV 177

Query: 61  QLFHTLSDKYPTENLLLVTHGK 82
           QLFHTL+DKYPTENLLLVTHG+
Sbjct: 178 QLFHTLADKYPTENLLLVTHGE 199

[Close]

BLAST of Csor.00g108250 vs. ExPASy TrEMBL
Match: A0A6J1FYZ4 (uncharacterized protein LOC111449111 OS=Cucurbita moschata OX=3662 GN=LOC111449111 PE=4 SV=1)

HSP 1 Score: 174 bits (440), Expect = 1.14e-52
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI 60
           MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRY+
Sbjct: 118 MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYV 177

Query: 61  QLFHTLSDKYPTENLLLVTHGK 82
           QLFHTL+DKYPTENLLLVTHG+
Sbjct: 178 QLFHTLADKYPTENLLLVTHGE 199

[Close]

BLAST of Csor.00g108250 vs. ExPASy TrEMBL
Match: A0A6J1IE93 (ubiquitin-associated and SH3 domain-containing protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111474791 PE=4 SV=1)

HSP 1 Score: 172 bits (435), Expect = 6.53e-52
Identity = 78/82 (95.12%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI 60
           MLTNEAIRPNVEPKDRNWDF+IPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRY+
Sbjct: 118 MLTNEAIRPNVEPKDRNWDFNIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYV 177

Query: 61  QLFHTLSDKYPTENLLLVTHGK 82
           QLFHTL+DKYPTENLLLVTHG+
Sbjct: 178 QLFHTLADKYPTENLLLVTHGE 199

[Close]

BLAST of Csor.00g108250 vs. ExPASy TrEMBL
Match: A0A5A7U5U0 (Phosphoglycerate mutase family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G00520 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 6.43e-43
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 1   MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI 60
           MLT+EAIRP V PKD NW FDIPQLEAILP GTVDHSIERVYKEMLPWEG+  VTHRRY+
Sbjct: 113 MLTSEAIRPKVAPKDLNWGFDIPQLEAILPSGTVDHSIERVYKEMLPWEGTTVVTHRRYV 172

Query: 61  QLFHTLSDKYPTENLLLVTHGK 82
            LF TL+DKYP+ENLLLVTHG+
Sbjct: 173 HLFQTLADKYPSENLLLVTHGE 194

[Close]

BLAST of Csor.00g108250 vs. ExPASy TrEMBL
Match: A0A1S3AV13 (uncharacterized protein LOC103483134 OS=Cucumis melo OX=3656 GN=LOC103483134 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 6.43e-43
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 1   MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI 60
           MLT+EAIRP V PKD NW FDIPQLEAILP GTVDHSIERVYKEMLPWEG+  VTHRRY+
Sbjct: 113 MLTSEAIRPKVAPKDLNWGFDIPQLEAILPSGTVDHSIERVYKEMLPWEGTTVVTHRRYV 172

Query: 61  QLFHTLSDKYPTENLLLVTHGK 82
            LF TL+DKYP+ENLLLVTHG+
Sbjct: 173 HLFQTLADKYPSENLLLVTHGE 194

[Close]

BLAST of Csor.00g108250 vs. ExPASy TrEMBL
Match: A0A0A0L5Q1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118040 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 1.19e-42
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1   MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI 60
           MLT+EAIRP V PKD NW FDIPQLEAILP GTVDHS+ERV+KEMLPWEG+A VTHRRY+
Sbjct: 110 MLTSEAIRPKVAPKDLNWGFDIPQLEAILPSGTVDHSVERVHKEMLPWEGTAVVTHRRYV 169

Query: 61  QLFHTLSDKYPTENLLLVTHGK 82
            LF TL+DKYP+ENLLLVTHG+
Sbjct: 170 HLFQTLADKYPSENLLLVTHGE 191

[Close]

BLAST of Csor.00g108250 vs. TAIR 10
Match: AT3G60440.1 (Phosphoglycerate mutase family protein )

HSP 1 Score: 97.8 bits (242), Expect = 4.2e-21
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 1   MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI 60
           ML + AI+P + PKD  +DF I +LEAI P G VDHS++ VYKEM  WE +      R++
Sbjct: 145 MLNSIAIKPEIAPKDGKFDFMISELEAIFPDGMVDHSVDPVYKEMPQWEETVEGCTDRFL 204

Query: 61  QLFHTLSDKYPTENLLLVTHGK 83
            L  TL+DKYP+ENLLLVTHG+
Sbjct: 205 SLIKTLADKYPSENLLLVTHGE 226

[Close]

BLAST of Csor.00g108250 vs. TAIR 10
Match: AT3G60420.2 (Phosphoglycerate mutase family protein )

HSP 1 Score: 94.4 bits (233), Expect = 4.7e-20
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 1   MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI 60
           ML + A +P V PKD  +DF I +LEA+ P G VDH+++ VYKEM  WE +    + RY+
Sbjct: 213 MLNSIAFKPEVAPKDGKFDFKISELEAMFPDGMVDHNVDPVYKEMPQWEETLESCNNRYV 272

Query: 61  QLFHTLSDKYPTENLLLVTH 81
            L  TL+DKYP ENLLLVTH
Sbjct: 273 NLVKTLADKYPCENLLLVTH 292

[Close]

BLAST of Csor.00g108250 vs. TAIR 10
Match: AT3G60420.3 (Phosphoglycerate mutase family protein )

HSP 1 Score: 94.4 bits (233), Expect = 4.7e-20
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 1   MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI 60
           ML + A +P V PKD  +DF I +LEA+ P G VDH+++ VYKEM  WE +    + RY+
Sbjct: 121 MLNSIAFKPEVAPKDGKFDFKISELEAMFPDGMVDHNVDPVYKEMPQWEETLESCNNRYV 180

Query: 61  QLFHTLSDKYPTENLLLVTH 81
            L  TL+DKYP ENLLLVTH
Sbjct: 181 NLVKTLADKYPCENLLLVTH 200

[Close]

BLAST of Csor.00g108250 vs. TAIR 10
Match: AT3G60450.1 (Phosphoglycerate mutase family protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-18
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 1   MLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYI 60
           ML + AIR  + PKD  +DF +  +E + P G VDH+++ VYKE+  WE S      RY+
Sbjct: 122 MLNSVAIRRELAPKDGKFDFTVSDIETMFPEGMVDHNVDMVYKELPKWEESVEGCRDRYV 181

Query: 61  QLFHTLSDKYPTENLLLVTHGK 83
           ++   L+DKYP ENLLLVTHG+
Sbjct: 182 KVVKALADKYPEENLLLVTHGE 203

[Close]

BLAST of Csor.00g108250 vs. TAIR 10
Match: AT3G60420.1 (Phosphoglycerate mutase family protein )

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-15
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 7   IRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYIQLFHTL 66
           I+  V PKD  +DF I  LEA+ P GTVD +++ VYKE+  W  SA     RY +    L
Sbjct: 127 IKSEVAPKDGKFDFKISDLEAMFPEGTVDSNVDMVYKEVPEWGESAQAFEDRYYKTVKIL 186

Query: 67  SDKYPTENLLLVTH 81
           ++KYP+ENLLLVTH
Sbjct: 187 AEKYPSENLLLVTH 200

The following BLAST results are available for this feature:

BLAST of Csor.00g108250 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g108250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597038.1	5.57e-56	100.00	hypothetical protein SDJN03_10218, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6597037.1	6.68e-54	96.34	hypothetical protein SDJN03_10217, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022944754.1	2.36e-52	96.34	uncharacterized protein LOC111449111 [Cucurbita moschata]	[more]
KAG6597036.1	2.36e-52	96.34	hypothetical protein SDJN03_10216, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023540071.1	1.35e-51	95.12	uncharacterized protein LOC111800554 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g108250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYZ4	1.14e-52	96.34	uncharacterized protein LOC111449111 OS=Cucurbita moschata OX=3662 GN=LOC1114491...	[more]
A0A6J1IE93	6.53e-52	95.12	ubiquitin-associated and SH3 domain-containing protein A-like OS=Cucurbita maxim...	[more]
A0A5A7U5U0	6.43e-43	81.71	Phosphoglycerate mutase family protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3AV13	6.43e-43	81.71	uncharacterized protein LOC103483134 OS=Cucumis melo OX=3656 GN=LOC103483134 PE=...	[more]
A0A0A0L5Q1	1.19e-42	80.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118040 PE=4 SV=1	[more]

BLAST of Csor.00g108250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60440.1	4.2e-21	54.88	Phosphoglycerate mutase family protein	[more]
AT3G60420.2	4.7e-20	53.75	Phosphoglycerate mutase family protein	[more]
AT3G60420.3	4.7e-20	53.75	Phosphoglycerate mutase family protein	[more]
AT3G60450.1	1.2e-18	47.56	Phosphoglycerate mutase family protein	[more]
AT3G60420.1	2.7e-15	50.00	Phosphoglycerate mutase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR16469:SF49	PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN	coord: 1..81
None	No IPR available	PANTHER	PTHR16469	FAMILY NOT NAMED	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g108250.m01	Csor.00g108250.m01	mRNA