Csor.00g108010 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g108010
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S acidic ribosomal protein P1-like
Location	Csor_Chr06: 7360702 .. 7362872 (+)
RNA-Seq Expression	Csor.00g108010
Synteny	Csor.00g108010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAAAAGATTCAAAGAGGTCGCTCTTTAACTAATAAATGTCCAAAAGATGAATTTCAATTACTCATCACTAAGATTGTCGTTCATGAATGGATCATTATGTTATAAATAAATTCAAATAACTCTTGTAGACGAAGAGATGACGTGTAACGGTCTAAGCCCACCCTAGTAGATATTGTCCTCTTTCGGCTTTCTCTCTCGGACTTCCCCTTAAAAATTTTAAAAGGCGTCTTATAGAAAAAAGTTTCCACACCCTTATAAATAATTCTTAGTTATCTTCCCAAACCAATGGAGATCTCACAACCAACCCTCCTTTAGGGCCAGCGTCTTCATTGGCACTCGTTTCCTTCTTCAATCAGTGTGGGATCCCCCAATCCACCCTTTTTGGGGTCAAGTGTTCTTGCTGACACACCGCCTCGTGTCCACCCCCTTCGGGGCTCAGCCTCCTCACGAGCACATCGCCTGGTGTTTGGCTTTGATACCATTTGTATTAGCTCAAGTCCACCACTAGCATCGTCCTATTTGAGCTTTCGCTTCTAAGCTTTCCCTCAAGATTTTTAAAACTGGTATAATAGGGAGAGGTTTCCAGACCCTTATAAAAAATGATTTGTTCTCCTCCCTAACTAATGTGGAATCTCTCGTGACGACCTTTCAAACTCTAGAAAGGATATTGTTACTTAAAGATCTGATGAAGAAGTCTTCGTTGCCGAAAATTTGGAGACTTGGACTAGAGTAAGGGGGAGACATTGCCCTTATTTCGCTCGAGAAACAAATGCCTCTTTACAGCTTGTTAAACGACGAATTGTGCTCGAACAATGTCGTTGAATATCCAAAATCTTGGCTAGAACGAACATTTTGCATTGTCACAAGTAAATTATACCACCAATGGAAGATGAACATCAAGAAATAAACATGATCTTCGATTGGGATTAGCCTCTCATAGACCATCTTTAACATGGGAAGCTTCCCACAAATCCTGACATAAGGTTGATGTCTGAAAGGTGTAAGCCCTGGTCCAATAAGTCCAAGCCTAGTTTTAACCATAATTGGGCCGTGGCAAGAACGAGGCCGTGCCTGGATCTGGGCCTGTCCATGCTGGGCTCCACAAATAAAGGAAGCCCACATATGAAGCTTCAATAAAAACCCTACCTTGGTGAGTTTCTCAAACCCTAGAACGCATTCGTGTTGCGCAGCGAAGAACAGACTGCTTAGAGCCTCGCCGTCGCTCATACTTCTGGTTGGAAAGCTCTCTCCTTCAATCCTCAATTGTTTTTCCTGATTGATTTTTCTGTAATGCGTTCAAATTCTAATGATTCAGGATTTGTGTTCTTTTTCTGATTTCTTCTTCTGTAATTTTTATCGCTTTTGAACGTGCAGTGAAAATGTCGGTCGGTGAAATTGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGACAACATCCCCGTCACCGTATGTTTCTCTTCAATCATGACATTCTCCTTCAATATTTATGTTCTTTATCAGTACTTACCTTTCGGGATCTCGTTTACCGATTTCTAAGTAATTAGTAGGGAGATTATCATGTGTTATTCAAAAGGATTGTTGTGAATGTTGTCCGTTTTCGAACTGTTTCTTCGTCTTAATTTCATATTATATATAGAACGACGCTTACAATCTAGATATTGTTTTTCTGTTATTACACATTTTCTTGTATGTTTATGAAATTTGTTCCAATGTGTGACGATTGTTTTTTGTTATGAATTTCTGTGATAGCGTTTGTTATATCATCTGTATTGGAATAAGATTTCGAAATGTGTTTCTTTTAACAGGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGAAGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGTATGGCGATAGAGCAATTTCAATTCTGAGAATAATACTGTTATCCGTTCATGTACATCGTCATGACATGGGATTGTTTTTGTAACTTGCAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAG

mRNA sequence

ATGTCCAAAAGATTCAAAGAGAGCCTCGCCGTCGCTCATACTTCTGTGAAAATGTCGGTCGGTGAAATTGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGACAACATCCCCGTCACCGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGAAGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAG

Coding sequence (CDS)

ATGTCCAAAAGATTCAAAGAGAGCCTCGCCGTCGCTCATACTTCTGTGAAAATGTCGGTCGGTGAAATTGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGACAACATCCCCGTCACCGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGAAGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAG

Protein sequence

MSKRFKESLAVAHTSVKMSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD

Homology

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BLAST of Csor.00g108010 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.6e-33
Identity = 82/112 (73.21%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 18  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 77
           M+ GE+AC YAALIL DD I +TAEK+AT+VKAA ++ ESYW +LFAKL EKRN+ DLI+
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 78  NVGAGGGAA-VAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 129
           +VG+GGGAA VAAA P   AGGAAAAAAP  EEKKEE KEESDDDMGFSLFD
Sbjct: 61  SVGSGGGAAPVAAAAP---AGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109

[Close]

BLAST of Csor.00g108010 vs. ExPASy Swiss-Prot
Match: O23095 (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 4.0e-31
Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 19  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 78
           +VGE+ACSYA +IL D+ I +T++K+ATLVKAAGVE ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 79  VGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 129
           VGA   GGGA V+AA PA  A G AAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGGAPVSAAAPA--AAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Csor.00g108010 vs. ExPASy Swiss-Prot
Match: Q8LEQ0 (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-30
Identity = 78/112 (69.64%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 19  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 78
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 79  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 129
           VGA  GGGA VAAA PA G GGAAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAG-GGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Csor.00g108010 vs. ExPASy Swiss-Prot
Match: Q8LCW9 (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 3.4e-30
Identity = 77/112 (68.75%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 19  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 78
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 79  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 129
           VGA  GGGA VAAA PA G G AAA AA   E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAGGGAAAAPAA--EEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of Csor.00g108010 vs. ExPASy Swiss-Prot
Match: P29763 (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.8e-27
Identity = 70/111 (63.06%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 18  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 77
           MS  E+AC+YAALIL+DD + +TA+ + T+ KAAGVE E YW +LFAKL  K+++ DLI 
Sbjct: 1   MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60

Query: 78  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 129
           NVGAGGGAA AAA PA  AGGA AA A P +E+K+EP EE  +DMGFSLFD
Sbjct: 61  NVGAGGGAAPAAAAPA--AGGAPAAGAAPKKEEKKEPSEE--EDMGFSLFD 107

[Close]

BLAST of Csor.00g108010 vs. NCBI nr
Match: KAG6597015.1 (60S acidic ribosomal protein P1-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236 bits (601), Expect = 7.36e-78
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSKRFKESLAVAHTSVKMSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWF 60
           MSKRFKESLAVAHTSVKMSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWF
Sbjct: 1   MSKRFKESLAVAHTSVKMSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWF 60

Query: 61  SLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDD 120
           SLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDD
Sbjct: 61  SLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDD 120

Query: 121 DMGFSLFD 128
           DMGFSLFD
Sbjct: 121 DMGFSLFD 128

[Close]

BLAST of Csor.00g108010 vs. NCBI nr
Match: XP_022951343.1 (60S acidic ribosomal protein P1-like [Cucurbita moschata] >KAG7028491.1 60S acidic ribosomal protein P1-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 205 bits (521), Expect = 6.69e-66
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 18  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 77
           MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM
Sbjct: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 60

Query: 78  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 128
           NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of Csor.00g108010 vs. NCBI nr
Match: XP_022974253.1 (60S acidic ribosomal protein P1-like [Cucurbita maxima] >XP_022975257.1 60S acidic ribosomal protein P1-like [Cucurbita maxima] >XP_023538866.1 60S acidic ribosomal protein P1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204 bits (518), Expect = 1.92e-65
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 18  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 77
           MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV+AESYWFSLFAKLAEKRNIGDLIM
Sbjct: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60

Query: 78  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 128
           NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of Csor.00g108010 vs. NCBI nr
Match: XP_038883955.1 (60S acidic ribosomal protein P1-like [Benincasa hispida])

HSP 1 Score: 182 bits (462), Expect = 7.03e-57
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 18  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLI 77
           MS GEIACSYAALILYDDNIP+TAEK+AT+VKAA V + ESYWF LFAKLAEKRNIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATIVKAANVPDVESYWFGLFAKLAEKRNIGDLI 60

Query: 78  MNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 128
           +NVGAGGGAAVAAAVPA G AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPASGVAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Csor.00g108010 vs. NCBI nr
Match: XP_008437779.1 (PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo] >KAA0048820.1 60S acidic ribosomal protein P1-like [Cucumis melo var. makuwa] >TYK20773.1 60S acidic ribosomal protein P1-like [Cucumis melo var. makuwa])

HSP 1 Score: 182 bits (461), Expect = 9.99e-57
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 18  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLI 77
           MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V + ESYW+SLFAKLAEKRNIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 78  MNVGAGGGAAVAAAVPAGGAG-GAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 128
           +NVGAGGGAAVAAAVPAGGA  G AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Csor.00g108010 vs. ExPASy TrEMBL
Match: A0A6J1GHG1 (60S acidic ribosomal protein P1-like OS=Cucurbita moschata OX=3662 GN=LOC111454200 PE=3 SV=1)

HSP 1 Score: 205 bits (521), Expect = 3.24e-66
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 18  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 77
           MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM
Sbjct: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 60

Query: 78  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 128
           NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of Csor.00g108010 vs. ExPASy TrEMBL
Match: A0A6J1ICK4 (60S acidic ribosomal protein P1-like OS=Cucurbita maxima OX=3661 GN=LOC111474378 PE=3 SV=1)

HSP 1 Score: 204 bits (518), Expect = 9.28e-66
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 18  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 77
           MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV+AESYWFSLFAKLAEKRNIGDLIM
Sbjct: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60

Query: 78  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 128
           NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of Csor.00g108010 vs. ExPASy TrEMBL
Match: A0A5D3DB57 (60S acidic ribosomal protein P1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00330 PE=3 SV=1)

HSP 1 Score: 182 bits (461), Expect = 4.84e-57
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 18  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLI 77
           MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V + ESYW+SLFAKLAEKRNIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 78  MNVGAGGGAAVAAAVPAGGAG-GAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 128
           +NVGAGGGAAVAAAVPAGGA  G AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Csor.00g108010 vs. ExPASy TrEMBL
Match: A0A1S3AUG9 (60S acidic ribosomal protein P1-like OS=Cucumis melo OX=3656 GN=LOC103483111 PE=3 SV=1)

HSP 1 Score: 182 bits (461), Expect = 4.84e-57
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 18  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLI 77
           MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V + ESYW+SLFAKLAEKRNIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 78  MNVGAGGGAAVAAAVPAGGAG-GAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 128
           +NVGAGGGAAVAAAVPAGGA  G AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Csor.00g108010 vs. ExPASy TrEMBL
Match: A0A0A0L5M7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116860 PE=3 SV=1)

HSP 1 Score: 178 bits (452), Expect = 1.14e-55
Identity = 99/113 (87.61%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 18  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLI 77
           MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V + ESYW+ LFAKLAEKR+IGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 78  MNVGAGGGAAVAAAVPAGGA-GGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 128
           +NVGAGGGAAVAAA PAGGA GG AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Csor.00g108010 vs. TAIR 10
Match: AT4G00810.1 (60S acidic ribosomal protein family )

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-32
Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 19  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 78
           +VGE+ACSYA +IL D+ I +T++K+ATLVKAAGVE ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 79  VGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 129
           VGA   GGGA V+AA PA  A G AAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGGAPVSAAAPA--AAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Csor.00g108010 vs. TAIR 10
Match: AT4G00810.2 (60S acidic ribosomal protein family )

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-32
Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 19  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 78
           +VGE+ACSYA +IL D+ I +T++K+ATLVKAAGVE ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 79  VGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 129
           VGA   GGGA V+AA PA  A G AAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGGAPVSAAAPA--AAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Csor.00g108010 vs. TAIR 10
Match: AT5G47700.1 (60S acidic ribosomal protein family )

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-31
Identity = 78/112 (69.64%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 19  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 78
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 79  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 129
           VGA  GGGA VAAA PA G GGAAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAG-GGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Csor.00g108010 vs. TAIR 10
Match: AT5G47700.2 (60S acidic ribosomal protein family )

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-31
Identity = 78/112 (69.64%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 19  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 78
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 79  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 129
           VGA  GGGA VAAA PA G GGAAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAG-GGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Csor.00g108010 vs. TAIR 10
Match: AT1G01100.1 (60S acidic ribosomal protein family )

HSP 1 Score: 132.5 bits (332), Expect = 2.4e-31
Identity = 77/112 (68.75%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 19  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 78
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 79  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 129
           VGA  GGGA VAAA PA G G AAA AA   E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAGGGAAAAPAA--EEKKKDEPAEESDGDLGFGLFD 112

The following BLAST results are available for this feature:

BLAST of Csor.00g108010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52855	5.6e-33	73.21	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]
O23095	4.0e-31	69.03	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 ...	[more]
Q8LEQ0	1.5e-30	69.64	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 ...	[more]
Q8LCW9	3.4e-30	68.75	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 ...	[more]
P29763	7.8e-27	63.06	60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1	[more]

BLAST of Csor.00g108010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597015.1	7.36e-78	100.00	60S acidic ribosomal protein P1-2, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022951343.1	6.69e-66	100.00	60S acidic ribosomal protein P1-like [Cucurbita moschata] >KAG7028491.1 60S acid...	[more]
XP_022974253.1	1.92e-65	99.10	60S acidic ribosomal protein P1-like [Cucurbita maxima] >XP_022975257.1 60S acid...	[more]
XP_038883955.1	7.03e-57	89.38	60S acidic ribosomal protein P1-like [Benincasa hispida]	[more]
XP_008437779.1	9.99e-57	89.38	PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo] >KAA0048820.1 60S...	[more]

BLAST of Csor.00g108010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GHG1	3.24e-66	100.00	60S acidic ribosomal protein P1-like OS=Cucurbita moschata OX=3662 GN=LOC1114542...	[more]
A0A6J1ICK4	9.28e-66	99.10	60S acidic ribosomal protein P1-like OS=Cucurbita maxima OX=3661 GN=LOC111474378...	[more]
A0A5D3DB57	4.84e-57	89.38	60S acidic ribosomal protein P1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3AUG9	4.84e-57	89.38	60S acidic ribosomal protein P1-like OS=Cucumis melo OX=3656 GN=LOC103483111 PE=...	[more]
A0A0A0L5M7	1.14e-55	87.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116860 PE=3 SV=1	[more]

BLAST of Csor.00g108010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00810.1	2.9e-32	69.03	60S acidic ribosomal protein family	[more]
AT4G00810.2	2.9e-32	69.03	60S acidic ribosomal protein family	[more]
AT5G47700.1	1.1e-31	69.64	60S acidic ribosomal protein family	[more]
AT5G47700.2	1.1e-31	69.64	60S acidic ribosomal protein family	[more]
AT1G01100.1	2.4e-31	68.75	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 18..80 e-value: 6.6E-30 score: 104.8
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 39..127 e-value: 9.7E-26 score: 90.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..122
None	No IPR available	PANTHER	PTHR45696	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 18..128
None	No IPR available	PANTHER	PTHR45696:SF22	60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED	coord: 18..128
None	No IPR available	CDD	cd05831	Ribosomal_P1	coord: 22..127 e-value: 1.33139E-25 score: 90.8439
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 23..128 score: 14.878532

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g108010.m01	Csor.00g108010.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032147	activation of protein kinase activity
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0030295	protein kinase activator activity
molecular_function	GO:0043021	ribonucleoprotein complex binding
molecular_function	GO:0003735	structural constituent of ribosome