Csor.00g106170 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g106170
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Transcription factor UPBEAT1
Location	Csor_Chr17: 8644409 .. 8644792 (-)
RNA-Seq Expression	Csor.00g106170
Synteny	Csor.00g106170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCTTTCCCAAACACCCTTTTGCTCCTTCAACTCAACATGGAAGAACCAACACAAGATATCATCATCAATGGATCCATATTGAAGAAATCATCCATGGAAGAAGAACAAAAAAACAACAAAAGTTGCAGAAGAAGAAGAAGAACAAGCAAATCATTGGCCAAGAAGACAAGAAGATCATCAACTAGAATAGTGCAAAGGGTCACCACTTTGAGAAACCTCGTACCCAACATGAACAACGACAACGACAATGACAACAACGATGGCTCGTTAGAACAGCTTTTCACTCACACAGCTGACTACATATTGTCGTTGCAAACAAGAGTGAGATTCATGAGGACTTTGGTCGATGTCTTGTCCGGTTCTTCTTCAAGAATTTGA

mRNA sequence

ATGGGAGCTTTCCCAAACACCCTTTTGCTCCTTCAACTCAACATGGAAGAACCAACACAAGATATCATCATCAATGGATCCATATTGAAGAAATCATCCATGGAAGAAGAACAAAAAAACAACAAAAGTTGCAGAAGAAGAAGAAGAACAAGCAAATCATTGGCCAAGAAGACAAGAAGATCATCAACTAGAATAGTGCAAAGGGTCACCACTTTGAGAAACCTCGTACCCAACATGAACAACGACAACGACAATGACAACAACGATGGCTCGTTAGAACAGCTTTTCACTCACACAGCTGACTACATATTGTCGTTGCAAACAAGAGTGAGATTCATGAGGACTTTGGTCGATGTCTTGTCCGGTTCTTCTTCAAGAATTTGA

Coding sequence (CDS)

ATGGGAGCTTTCCCAAACACCCTTTTGCTCCTTCAACTCAACATGGAAGAACCAACACAAGATATCATCATCAATGGATCCATATTGAAGAAATCATCCATGGAAGAAGAACAAAAAAACAACAAAAGTTGCAGAAGAAGAAGAAGAACAAGCAAATCATTGGCCAAGAAGACAAGAAGATCATCAACTAGAATAGTGCAAAGGGTCACCACTTTGAGAAACCTCGTACCCAACATGAACAACGACAACGACAATGACAACAACGATGGCTCGTTAGAACAGCTTTTCACTCACACAGCTGACTACATATTGTCGTTGCAAACAAGAGTGAGATTCATGAGGACTTTGGTCGATGTCTTGTCCGGTTCTTCTTCAAGAATTTGA

Protein sequence

MGAFPNTLLLLQLNMEEPTQDIIINGSILKKSSMEEEQKNNKSCRRRRRTSKSLAKKTRRSSTRIVQRVTTLRNLVPNMNNDNDNDNNDGSLEQLFTHTADYILSLQTRVRFMRTLVDVLSGSSSRI

Homology

[Close]

BLAST of Csor.00g106170 vs. NCBI nr
Match: KAG6575752.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231 bits (590), Expect = 3.25e-76
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MGAFPNTLLLLQLNMEEPTQDIIINGSILKKSSMEEEQKNNKSCRRRRRTSKSLAKKTRR 60
           MGAFPNTLLLLQLNMEEPTQDIIINGSILKKSSMEEEQKNNKSCRRRRRTSKSLAKKTRR
Sbjct: 1   MGAFPNTLLLLQLNMEEPTQDIIINGSILKKSSMEEEQKNNKSCRRRRRTSKSLAKKTRR 60

Query: 61  SSTRIVQRVTTLRNLVPNMNNDNDNDNNDGSLEQLFTHTADYILSLQTRVRFMRTLVDVL 120
           SSTRIVQRVTTLRNLVPNMNNDNDNDNNDGSLEQLFTHTADYILSLQTRVRFMRTLVDVL
Sbjct: 61  SSTRIVQRVTTLRNLVPNMNNDNDNDNNDGSLEQLFTHTADYILSLQTRVRFMRTLVDVL 120

Query: 121 SGSSSRI 127
           SGSSSRI
Sbjct: 121 SGSSSRI 127

[Close]

BLAST of Csor.00g106170 vs. NCBI nr
Match: KAG7025601.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129 bits (323), Expect = 1.45e-35
Identity = 85/132 (64.39%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 1   MGAFPNTLLLLQLNMEEPTQDIIINGSILKKSSMEEEQKNN-----KSCRRRRRTSKSLA 60
           MG +P TLLL+QLNM+EP+QD         ++SMEE+Q+       KS  RRRR+S SL 
Sbjct: 1   MGVYPETLLLVQLNMKEPSQD---------ETSMEEQQQEQQEAIAKSFNRRRRSSNSLM 60

Query: 61  KKTR-RSSTRIVQRVTTLRNLVPNMNNDNDNDNND-GSLEQLFTHTADYILSLQTRVRFM 120
           KK R RSSTRI QRV+TLRNLVPNMNN+N+N  +  GSLEQLFT TADYILSLQTRVRFM
Sbjct: 61  KKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQTRVRFM 120

Query: 121 RTLVDVLSGSSS 125
           + LVDVLS SS+
Sbjct: 121 KNLVDVLSASSN 123

[Close]

BLAST of Csor.00g106170 vs. NCBI nr
Match: KAG6593250.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127 bits (318), Expect = 9.69e-35
Identity = 85/137 (62.04%), Postives = 100/137 (72.99%), Query Frame = 0


Query: 1   MGAFPNTLLLLQLNMEEPTQDIIINGSILKKSSMEEEQKNN----------KSCRRRRRT 60
           MG +P TLLL+QLNM+EP+QD         ++SMEE+Q+            KS  RRRR+
Sbjct: 1   MGVYPETLLLVQLNMKEPSQD---------ETSMEEQQEQQEQQEQQEAIAKSFNRRRRS 60

Query: 61  SKSLAKKTR-RSSTRIVQRVTTLRNLVPNMNNDNDNDNND-GSLEQLFTHTADYILSLQT 120
           S SL KK R RSSTRI QRV+TLRNLVPNMNN+N+N  +  GSLEQLFT TADYILSLQT
Sbjct: 61  SNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQT 120

Query: 121 RVRFMRTLVDVLSGSSS 125
           RVRFM+ LVDVLS SS+
Sbjct: 121 RVRFMKNLVDVLSASSN 128

[Close]

BLAST of Csor.00g106170 vs. NCBI nr
Match: XP_031744332.1 (transcription factor UPBEAT1 [Cucumis sativus] >KGN45028.1 hypothetical protein Csa_016025 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 4.70e-22
Identity = 82/165 (49.70%), Postives = 99/165 (60.00%), Query Frame = 0


Query: 1   MGAFPNTLLLLQLNMEE--PTQDIIIN-----------GSILKKSSMEEEQ--------K 60
           MG    TLL +QLNME+   TQD II+            S  KK+SM+EE+        K
Sbjct: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK 60

Query: 61  NNKSC----------RRRRRTSKSLAKKTRRSST----RIVQRVTTLRNLVPNMNNDNDN 120
           ++KS           RR R  S  L K++RRSS+    RI QRV TLR+LVPN +N N +
Sbjct: 61  DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHD 120

Query: 121 DNND---GSLEQLFTHTADYILSLQTRVRFMRTLVDVLSGSSSRI 127
           D ++   GSLEQLFT TADYILSLQTRVR M+TLVDVLS  SS I
Sbjct: 121 DQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSI 165

[Close]

BLAST of Csor.00g106170 vs. NCBI nr
Match: KAA0046707.1 (transcription factor UPBEAT1 [Cucumis melo var. makuwa] >TYK18243.1 transcription factor UPBEAT1 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 8.46e-21
Identity = 82/170 (48.24%), Postives = 95/170 (55.88%), Query Frame = 0


Query: 1   MGAFPNTLLLLQLNMEE--PTQDIII-----------NGSILKKSSMEEEQ--------- 60
           MG    TLL +QLNME+   TQD II           + SI KK SM+EE          
Sbjct: 1   MGVSQETLLQIQLNMEDHKTTQDRIIIIKEIRNDSSNDQSIWKKKSMKEEVGEEEDQEIN 60

Query: 61  ---KNNKSC----------RRRRRTSKSLAKKTRRSST------RIVQRVTTLRNLVPNM 120
              K+  +C          RR R  S  L K++RRSS+      RI QRV  LRNLVPN 
Sbjct: 61  SKGKDKSTCNNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSTSRIEQRVNILRNLVPNN 120

Query: 121 NNDNDNDNN--DGSLEQLFTHTADYILSLQTRVRFMRTLVDVLSGSSSRI 127
           +N  D+D +   GSLEQLFT TADYILSLQTRVR M+TLVDVLS  SS I
Sbjct: 121 DNHQDDDESCTAGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSI 170

[Close]

BLAST of Csor.00g106170 vs. ExPASy TrEMBL
Match: A0A0A0K6D9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.27e-22
Identity = 82/165 (49.70%), Postives = 99/165 (60.00%), Query Frame = 0


Query: 1   MGAFPNTLLLLQLNMEE--PTQDIIIN-----------GSILKKSSMEEEQ--------K 60
           MG    TLL +QLNME+   TQD II+            S  KK+SM+EE+        K
Sbjct: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK 60

Query: 61  NNKSC----------RRRRRTSKSLAKKTRRSST----RIVQRVTTLRNLVPNMNNDNDN 120
           ++KS           RR R  S  L K++RRSS+    RI QRV TLR+LVPN +N N +
Sbjct: 61  DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHD 120

Query: 121 DNND---GSLEQLFTHTADYILSLQTRVRFMRTLVDVLSGSSSRI 127
           D ++   GSLEQLFT TADYILSLQTRVR M+TLVDVLS  SS I
Sbjct: 121 DQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSI 165

[Close]

BLAST of Csor.00g106170 vs. ExPASy TrEMBL
Match: A0A5A7TXU1 (Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001830 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.10e-21
Identity = 82/170 (48.24%), Postives = 95/170 (55.88%), Query Frame = 0


Query: 1   MGAFPNTLLLLQLNMEE--PTQDIII-----------NGSILKKSSMEEEQ--------- 60
           MG    TLL +QLNME+   TQD II           + SI KK SM+EE          
Sbjct: 1   MGVSQETLLQIQLNMEDHKTTQDRIIIIKEIRNDSSNDQSIWKKKSMKEEVGEEEDQEIN 60

Query: 61  ---KNNKSC----------RRRRRTSKSLAKKTRRSST------RIVQRVTTLRNLVPNM 120
              K+  +C          RR R  S  L K++RRSS+      RI QRV  LRNLVPN 
Sbjct: 61  SKGKDKSTCNNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSTSRIEQRVNILRNLVPNN 120

Query: 121 NNDNDNDNN--DGSLEQLFTHTADYILSLQTRVRFMRTLVDVLSGSSSRI 127
           +N  D+D +   GSLEQLFT TADYILSLQTRVR M+TLVDVLS  SS I
Sbjct: 121 DNHQDDDESCTAGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSI 170

[Close]

BLAST of Csor.00g106170 vs. ExPASy TrEMBL
Match: A0A445BD20 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g041547 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.68e-07
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 60  RSSTRIVQRVTTLRNLVPNMNNDNDNDNNDGSLEQLFTHTADYILSLQTRVRFMRTLVDV 119
           +S+  I  RV TL+NL+PN      +DNN G L+ LF  TA+YILSLQ RVR M+ +V V
Sbjct: 63  KSNNGIQSRVRTLKNLIPN------SDNNMG-LDGLFRETANYILSLQNRVRVMQVMVKV 119

Query: 120 LSGS 123
           L+GS
Sbjct: 123 LTGS 119

[Close]

BLAST of Csor.00g106170 vs. ExPASy TrEMBL
Match: A0A444XT61 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g099168 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.68e-07
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 60  RSSTRIVQRVTTLRNLVPNMNNDNDNDNNDGSLEQLFTHTADYILSLQTRVRFMRTLVDV 119
           +S+  I  RV TL+NL+PN      +DNN G L+ LF  TA+YILSLQ RVR M+ +V V
Sbjct: 63  KSNNGIQSRVRTLKNLIPN------SDNNMG-LDGLFRETANYILSLQNRVRVMQVMVKV 119

Query: 120 LSGS 123
           L+GS
Sbjct: 123 LTGS 119

[Close]

BLAST of Csor.00g106170 vs. ExPASy TrEMBL
Match: A0A6A4QW51 (Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00047543 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.31e-07
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 59  RRSSTRIVQRVTTLRNLVPNMNNDNDNDNNDGSLEQLFTHTADYILSLQTRVRFMRTLVD 118
           RR    I +RV TL+ LVPN  +          L+ LFT TADYIL+LQTRVR M+ +V+
Sbjct: 57  RRGVKGIQRRVRTLKRLVPNSES--------LELDGLFTETADYILALQTRVRIMQVMVN 113

Query: 119 VLSGS 123
           VL+GS
Sbjct: 117 VLTGS 113

[Close]

BLAST of Csor.00g106170 vs. TAIR 10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 42.4 bits (98), Expect = 3.3e-04
Identity = 33/87 (37.93%), Postives = 47/87 (54.02%), Query Frame = 0


Query: 46  RRRRTSKSLAKK-----------TRRSSTRIVQRVTTLRNLVPNMNNDNDNDNNDGSLEQ 105
           RR+R  ++L KK           +RR    I +RV TL+ LVPN             L+ 
Sbjct: 18  RRQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSE-------GLDG 77

Query: 106 LFTHTADYILSLQTRVRFMRTLVDVLS 122
           LF  TADYIL+L+ +V+ M+T+V VL+
Sbjct: 78  LFRQTADYILALEMKVKVMQTMVQVLT 97

The following BLAST results are available for this feature:

BLAST of Csor.00g106170 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g106170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575752.1	3.25e-76	100.00	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7025601.1	1.45e-35	64.39	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6593250.1	9.69e-35	62.04	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_031744332.1	4.70e-22	49.70	transcription factor UPBEAT1 [Cucumis sativus] >KGN45028.1 hypothetical protein ...	[more]
KAA0046707.1	8.46e-21	48.24	transcription factor UPBEAT1 [Cucumis melo var. makuwa] >TYK18243.1 transcriptio...	[more]

BLAST of Csor.00g106170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6D9	2.27e-22	49.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1	[more]
A0A5A7TXU1	4.10e-21	48.24	Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A445BD20	5.68e-07	53.13	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g041547 PE=4 SV=1	[more]
A0A444XT61	5.68e-07	53.13	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g099168 PE=4 SV=1	[more]
A0A6A4QW51	9.31e-07	50.77	Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein OS=Lu...	[more]

BLAST of Csor.00g106170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47270.1	3.3e-04	37.93	sequence-specific DNA binding transcription factors;transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 46..118 e-value: 3.1E-6 score: 29.2
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 45..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..63
None	No IPR available	PANTHER	PTHR33124:SF39	TRANSCRIPTION FACTOR UPBEAT1	coord: 29..122
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 29..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g106170.m01	Csor.00g106170.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0046983	protein dimerization activity