Csor.00g105250 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g105250
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	CCR4-NOT transcription complex subunit like
Location	Csor_Chr17: 8160820 .. 8162886 (+)
RNA-Seq Expression	Csor.00g105250
Synteny	Csor.00g105250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCTTCTTTCAGGTATCCATCGTTTAACCAGTCCTATTCGATTCCTCGCATTCAATTTAAATGATCTCTCAGGAGATATCGGGATTTCTATATATGCTGGAATGTGACTAGTGAGCTCGTTAGCAATGAAGTCCATCTGATAATTAATTCTGTAAAGTGGATCGGCTTTGATTCTTTTGTTGAAAATGGAATTTCCATTTTAGCAGGTAGTTGCTAATTCCTAATTGCTTTTGGCTGCTAACGCCAAGTGCTTCTACTGGTATTAGGTATTGTTTTTCAGAATTCTTATATTAGAAGTTTACTTGAGCAGTTTTCTTCGATCCCTCGCATTCAACGTTTAGAATCACATAGGATATACAGATCGTAATGTGTTGAATTGAGCATGTTTGCAGAATCCTATTGCATTTCTGTGTTGAAAATGGAATTGGACGATAGCTGCTGCCTTGCTGATTCTTAATTGGTTTCGGCTACTAAAGCAAACAGCTTATACTAAATCCTGGTTGGTTTTGTTTTGGCAAGTAGCGAAAAAGAGCTTATACTAATATTAGGATTGAGGCTTTATTTTGCTGATCTTGTTCGACATCTAATAGGATGAATCTTTGATTTGCTACCCAATTGGTCCCTGAACGAGCATGTATAGAATTTTGTCCACCAATTTTTTGGTTTCCGGATAAGACTCTTATTAGTTCTTCCTGAAAGCTCTTCTTTGATAGGGAAGTAGTTATAATTAATATGTTCGGGAAATGATTGTCCTGAAATGGCCTATATGGTATCTTGAAAAAGAATTTGGATTTTTTTGGGTTAACCACAGCTGAAGCGAAGGGGCAGGAAATAGCAGACCCAGAATCCGTCAACGGAGCTGCTAGTCCAACTTCTTGTTGCATGCACAAAGCATGCTCTTGTTGATGCACAAAAACTGTTAAAATCTTGAAAGATTAACTAAATCCAATTGTTTCTCAAGTAGTCAAGTAGTCAGTTGACTGAAAAATGAAGTGAAATGAGTCTGTAACAGCCCAAGCCCACCGCTAGCAGCTATTGTCCGCTTTGGACCGTTGTGTATTGTCGTCAGTCTCACGGTTTTTAAAACGCGTTTGTTAGGGAGAGGTTTCCACACTCTTATAAGGAATGTTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCCTTGGGGGTCTAGCGTCCTCGTTGGCATACCGCTCGGTGTCTGGCTTTGATACCATTTGTAACAGCCCAAACCCACCACTAATAGATATTATCCGTTTTACCTCATTACGTATTACCATCAGCCTCATAATTTTTAGAACGCGTCGGTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCATTCTTCTCTCCAACCGACGTGGGATCTCACATAATCAAACCCATGAGTGTCTCTAAATTCTTACAAGCCAAGGGGATTCTCTCTTTTCAATGATATGGAGTTTCCTCTTTAAAATCCTCTGGAAGTACTGTAGTGGAAAATACAGGTTCCTATCATTCCTGGTTCCATCTTCATTGTCCTTTGTTCTTCGTTTAGGTTTTCGCTTTTTCGCTTTTTCTCTTTTTTCTTTTCGCTTGATCTACAAATCTAAATTCTAGACACAGTGAGCCTGAGATGACTGATATTTGTTTTCACAATATTGCTACTCAGATTAGTGCTTGCGTGATTCCTTTTATGCAGGTACAGGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACCGAAACTCCATCAAGGAGGAAAATGGTTCGAGTAAAGCAAGTAGTGATGCCCAAGGTCCTCCATTCCTTACTATCTTGGCTGGAATTTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGTCGTCAAGCTGATCTCAACAAAGTAG

mRNA sequence

ATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCTTCTTTCAGGTACAGGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACCGAAACTCCATCAAGGAGGAAAATGGTTCGAGTAAAGCAAGTAGTGATGCCCAAGGTCCTCCATTCCTTACTATCTTGGCTGGAATTTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGTCGTCAAGCTGATCTCAACAAAGTAG

Coding sequence (CDS)

ATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCTTCTTTCAGGTACAGGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACCGAAACTCCATCAAGGAGGAAAATGGTTCGAGTAAAGCAAGTAGTGATGCCCAAGGTCCTCCATTCCTTACTATCTTGGCTGGAATTTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGTCGTCAAGCTGATCTCAACAAAGTAG

Protein sequence

MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVVKLISTK

Homology

[Close]

BLAST of Csor.00g105250 vs. NCBI nr
Match: KAG6575660.1 (hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014210.1 hypothetical protein SDJN02_24385 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234 bits (596), Expect = 3.67e-77
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60
           MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60

Query: 61  SITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV
Sbjct: 61  SITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLISTK 126
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Csor.00g105250 vs. NCBI nr
Match: XP_022953425.1 (uncharacterized protein LOC111455984 [Cucurbita moschata])

HSP 1 Score: 230 bits (586), Expect = 1.23e-75
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60
           MASIF+APPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF
Sbjct: 1   MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60

Query: 61  SITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSD NSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV
Sbjct: 61  SITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLISTK 126
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Csor.00g105250 vs. NCBI nr
Match: XP_023547947.1 (uncharacterized protein LOC111806743 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228 bits (580), Expect = 1.01e-74
Identity = 123/126 (97.62%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60
           MASIFAAPPSRLNLTSRPSLIHGAVLPSS AGIQYHSNAFPIPSF YRNTKGLELRQRSF
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSTAGIQYHSNAFPIPSFSYRNTKGLELRQRSF 60

Query: 61  SITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSDRNSIKEENGSSKAS DAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV
Sbjct: 61  SITASNSSDRNSIKEENGSSKASRDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLISTK 126
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Csor.00g105250 vs. NCBI nr
Match: XP_022991945.1 (uncharacterized protein LOC111488436 [Cucurbita maxima])

HSP 1 Score: 223 bits (568), Expect = 6.62e-73
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60
           MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLEL  RSF
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF 60

Query: 61  SITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSD NSI+EENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV
Sbjct: 61  SITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLIST 125
           KLIST
Sbjct: 121 KLIST 125

[Close]

BLAST of Csor.00g105250 vs. NCBI nr
Match: XP_038899532.1 (uncharacterized protein LOC120086813 isoform X1 [Benincasa hispida])

HSP 1 Score: 196 bits (498), Expect = 3.21e-62
Identity = 106/126 (84.13%), Postives = 112/126 (88.89%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60
           MASIFAAP  RLNLTSRPSLIH A LPSSI  IQ+HSNA P PSFRYRNT+GLELRQRSF
Sbjct: 1   MASIFAAPSFRLNLTSRPSLIHRAALPSSIDAIQFHSNASPFPSFRYRNTRGLELRQRSF 60

Query: 61  SITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSD NSIKEENGSSKAS+DAQGPPFLTILAGIFVFSL+LW+ SS  TS + LVV
Sbjct: 61  SITASNSSDGNSIKEENGSSKASTDAQGPPFLTILAGIFVFSLVLWIFSSVVTSFLSLVV 120

Query: 121 KLISTK 126
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Csor.00g105250 vs. ExPASy TrEMBL
Match: A0A6J1GPL5 (uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC111455984 PE=4 SV=1)

HSP 1 Score: 230 bits (586), Expect = 5.96e-76
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60
           MASIF+APPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF
Sbjct: 1   MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60

Query: 61  SITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSD NSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV
Sbjct: 61  SITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLISTK 126
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Csor.00g105250 vs. ExPASy TrEMBL
Match: A0A6J1JUC2 (uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436 PE=4 SV=1)

HSP 1 Score: 223 bits (568), Expect = 3.20e-73
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60
           MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLEL  RSF
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF 60

Query: 61  SITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSD NSI+EENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV
Sbjct: 61  SITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLIST 125
           KLIST
Sbjct: 121 KLIST 125

[Close]

BLAST of Csor.00g105250 vs. ExPASy TrEMBL
Match: A0A6J1KVQ7 (uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 3.06e-53
Identity = 95/127 (74.80%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRS 60
           MAS+FAAPPS+L L+S RPSL H A LPS I G+++H N FPIPSFRY+NTKGL+LRQRS
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPS-IVGVKFHRNGFPIPSFRYKNTKGLKLRQRS 60

Query: 61  FSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLV 120
           FSITASNSSD NS KEEN  SK + DAQGPPFLTILAG FVFSL+LW++SS+ T+LI LV
Sbjct: 61  FSITASNSSDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALV 120

Query: 121 VKLISTK 126
           VKLISTK
Sbjct: 121 VKLISTK 126

[Close]

BLAST of Csor.00g105250 vs. ExPASy TrEMBL
Match: A0A6J1H506 (uncharacterized protein LOC111460632 OS=Cucurbita moschata OX=3662 GN=LOC111460632 PE=4 SV=1)

HSP 1 Score: 169 bits (429), Expect = 5.06e-52
Identity = 93/127 (73.23%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRS 60
           MAS+FAAPPS+L L+S RPSL H A LPS I G+++H N FPIPSFRY+NTKGL+LRQRS
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPS-IVGVKFHRNGFPIPSFRYKNTKGLKLRQRS 60

Query: 61  FSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLV 120
           FSITASNSSD NS KE+N  SK + DAQGPPFLTILAG FVFSL+LW++SS+ T+LI L 
Sbjct: 61  FSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALA 120

Query: 121 VKLISTK 126
           VKLISTK
Sbjct: 121 VKLISTK 126

[Close]

BLAST of Csor.00g105250 vs. ExPASy TrEMBL
Match: A0A0A0K9W1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429580 PE=4 SV=1)

HSP 1 Score: 165 bits (417), Expect = 3.40e-50
Identity = 98/128 (76.56%), Postives = 105/128 (82.03%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELRQRS 60
           MAS+FAAPPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLELRQRS
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60

Query: 61  FSITASNSSDRNSIKEENGSSKASSD-AQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120
             I AS S+D NSIKEEN SSKASSD AQGPPFLTILAG FV SL+LW+ SSA TSL+GL
Sbjct: 61  --IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGL 120

Query: 121 VVKLISTK 126
           VVKLIS K
Sbjct: 121 VVKLISAK 126

The following BLAST results are available for this feature:

BLAST of Csor.00g105250 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g105250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575660.1	3.67e-77	100.00	hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022953425.1	1.23e-75	98.41	uncharacterized protein LOC111455984 [Cucurbita moschata]	[more]
XP_023547947.1	1.01e-74	97.62	uncharacterized protein LOC111806743 [Cucurbita pepo subsp. pepo]	[more]
XP_022991945.1	6.62e-73	96.80	uncharacterized protein LOC111488436 [Cucurbita maxima]	[more]
XP_038899532.1	3.21e-62	84.13	uncharacterized protein LOC120086813 isoform X1 [Benincasa hispida]	[more]

BLAST of Csor.00g105250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPL5	5.96e-76	98.41	uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC1114559...	[more]
A0A6J1JUC2	3.20e-73	96.80	uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436...	[more]
A0A6J1KVQ7	3.06e-53	74.80	uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025...	[more]
A0A6J1H506	5.06e-52	73.23	uncharacterized protein LOC111460632 OS=Cucurbita moschata OX=3662 GN=LOC1114606...	[more]
A0A0A0K9W1	3.40e-50	76.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429580 PE=4 SV=1	[more]

BLAST of Csor.00g105250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g105250.m01	Csor.00g105250.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane