Csor.00g104610 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g104610
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	methyl-CPG-binding domain 11
Location	Csor_Chr17: 7843965 .. 7844369 (+)
RNA-Seq Expression	Csor.00g104610
Synteny	Csor.00g104610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGTAGCACCCACGGGCGAGGAGATCAGTAATAGAAAACAGCTTGAGCAGTACTTGAAATCGCATTCCGAAGACGTTGCAGTATCGGATTTTGATTGGAGTACTGGTGTAACACCCAGGAGATCTGCTAGGATTAGTGAGAAGGCAAAGCAACTCCACCACAGGAAGAGCCTCCATGGAAACGAGTGAGATAATCTCCAAGTTCAAAAAAGAAGGAACACAACGAAGCAGAGAAAGGTATTGATTCATGCTGTATGAAACAGGAAAAGGCAGACGTTTGTAATATTGAGGAAAATGGGGCTGCTGGACAAGAGAATTGCAGTAGAATTGAAAAAACACCAGCATCCGATGGAACGATCACAGGAAAGGAAGACACACAAAGACGGAAAACACGATATCTAG

mRNA sequence

ATGTTCGTAGCACCCACGGGCGAGGAGATCAGTAATAGAAAACAGCTTGAGCAGTACTTGAAATCGCATTCCGAAGACGTTGCAGTATCGGATTTTGATTGGAGTACTGGTGTAACACCCAGGAGATCTGCTAGGATTAGTGAGAAGGCAAAGCAACTCCACCACAGGAAGAGCCTCCATGGAAACGAGAAAAGGCAGACGTTTGTAATATTGAGGAAAATGGGGCTGCTGGACAAGAGAATTGCAGTAGAATTGAAAAAACACCAGCATCCGATGGAACGATCACAGGAAAGGAAGACACACAAAGACGGAAAACACGATATCTAG

Coding sequence (CDS)

ATGTTCGTAGCACCCACGGGCGAGGAGATCAGTAATAGAAAACAGCTTGAGCAGTACTTGAAATCGCATTCCGAAGACGTTGCAGTATCGGATTTTGATTGGAGTACTGGTGTAACACCCAGGAGATCTGCTAGGATTAGTGAGAAGGCAAAGCAACTCCACCACAGGAAGAGCCTCCATGGAAACGAGAAAAGGCAGACGTTTGTAATATTGAGGAAAATGGGGCTGCTGGACAAGAGAATTGCAGTAGAATTGAAAAAACACCAGCATCCGATGGAACGATCACAGGAAAGGAAGACACACAAAGACGGAAAACACGATATCTAG

Protein sequence

MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLHGNEKRQTFVILRKMGLLDKRIAVELKKHQHPMERSQERKTHKDGKHDI

Homology

[Close]

BLAST of Csor.00g104610 vs. ExPASy Swiss-Prot
Match: Q9LW00 (Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=MBD11 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-15
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 52
          +FVAPTGEEISNRKQLEQYLKSH  + A+++FDW+T  TPRRSARISEK K
Sbjct: 36 VFVAPTGEEISNRKQLEQYLKSHPGNPAIAEFDWTTSGTPRRSARISEKTK 86

[Close]

BLAST of Csor.00g104610 vs. ExPASy Swiss-Prot
Match: Q9XI36 (Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=MBD10 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-14
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 52
          +FVAPTGEEIS+RKQLEQYLK+H  +  +S+F+W+TG TPRRS+RIS+K K
Sbjct: 36 VFVAPTGEEISSRKQLEQYLKAHPGNPVISEFEWTTGETPRRSSRISQKVK 86

[Close]

BLAST of Csor.00g104610 vs. NCBI nr
Match: KAG6575596.1 (Methyl-CpG-binding domain-containing protein 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215 bits (547), Expect = 2.90e-70
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLH 60
           MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLH
Sbjct: 1   MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLH 60

Query: 61  GNEKRQTFVILRKMGLLDKRIAVELKKHQHPMERSQERKTHKDGKHDI 108
           GNEKRQTFVILRKMGLLDKRIAVELKKHQHPMERSQERKTHKDGKHDI
Sbjct: 61  GNEKRQTFVILRKMGLLDKRIAVELKKHQHPMERSQERKTHKDGKHDI 108

[Close]

BLAST of Csor.00g104610 vs. NCBI nr
Match: KAG7014138.1 (Methyl-CpG-binding domain-containing protein 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.8 bits (242), Expect = 2.91e-24
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 17 EQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLHGNE 63
          E YLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLHGNE
Sbjct: 24 EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLHGNE 70

[Close]

BLAST of Csor.00g104610 vs. NCBI nr
Match: XP_023004320.1 (methyl-CpG-binding domain-containing protein 11-like isoform X5 [Cucurbita maxima])

HSP 1 Score: 97.1 bits (240), Expect = 2.39e-21
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 51
           +F+APTGEEISNRKQLEQYLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 53  IFIAPTGEEISNRKQLEQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Csor.00g104610 vs. NCBI nr
Match: XP_023004319.1 (methyl-CpG-binding domain-containing protein 11-like isoform X4 [Cucurbita maxima])

HSP 1 Score: 97.1 bits (240), Expect = 2.39e-21
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 51
           +F+APTGEEISNRKQLEQYLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 53  IFIAPTGEEISNRKQLEQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Csor.00g104610 vs. NCBI nr
Match: XP_023004318.1 (methyl-CpG-binding domain-containing protein 11-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 97.1 bits (240), Expect = 2.45e-21
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 51
           +F+APTGEEISNRKQLEQYLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 53  IFIAPTGEEISNRKQLEQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Csor.00g104610 vs. ExPASy TrEMBL
Match: A0A6J1KVX9 (methyl-CpG-binding domain-containing protein 11-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111497674 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.16e-21
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 51
           +F+APTGEEISNRKQLEQYLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 53  IFIAPTGEEISNRKQLEQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Csor.00g104610 vs. ExPASy TrEMBL
Match: A0A6J1KU91 (methyl-CpG-binding domain-containing protein 11-like isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111497674 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.16e-21
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 51
           +F+APTGEEISNRKQLEQYLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 53  IFIAPTGEEISNRKQLEQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Csor.00g104610 vs. ExPASy TrEMBL
Match: A0A6J1KZ45 (methyl-CpG-binding domain-containing protein 11-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111497674 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.19e-21
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 51
           +F+APTGEEISNRKQLEQYLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 53  IFIAPTGEEISNRKQLEQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Csor.00g104610 vs. ExPASy TrEMBL
Match: A0A6J1KQ36 (methyl-CpG-binding domain-containing protein 11-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497674 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.23e-21
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 51
           +F+APTGEEISNRKQLEQYLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 53  IFIAPTGEEISNRKQLEQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Csor.00g104610 vs. ExPASy TrEMBL
Match: A0A6J1KRS8 (methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497674 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.48e-21
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 51
           +F+APTGEEISNRKQLEQYLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 53  IFIAPTGEEISNRKQLEQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Csor.00g104610 vs. TAIR 10
Match: AT3G15790.1 (methyl-CPG-binding domain 11 )

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-16
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 52
          +FVAPTGEEISNRKQLEQYLKSH  + A+++FDW+T  TPRRSARISEK K
Sbjct: 36 VFVAPTGEEISNRKQLEQYLKSHPGNPAIAEFDWTTSGTPRRSARISEKTK 86

[Close]

BLAST of Csor.00g104610 vs. TAIR 10
Match: AT1G15340.1 (methyl-CPG-binding domain 10 )

HSP 1 Score: 78.6 bits (192), Expect = 3.5e-15
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 52
          +FVAPTGEEIS+RKQLEQYLK+H  +  +S+F+W+TG TPRRS+RIS+K K
Sbjct: 36 VFVAPTGEEISSRKQLEQYLKAHPGNPVISEFEWTTGETPRRSSRISQKVK 86

[Close]

BLAST of Csor.00g104610 vs. TAIR 10
Match: AT1G15340.2 (methyl-CPG-binding domain 10 )

HSP 1 Score: 44.3 bits (103), Expect = 7.3e-05
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1  MFVAPTGEEISNRKQLEQYLKSHSE 26
          +FVAPTGEEIS+RKQLEQYLK + E
Sbjct: 36 VFVAPTGEEISSRKQLEQYLKDNKE 60

The following BLAST results are available for this feature:

BLAST of Csor.00g104610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW00	2.0e-15	76.47	Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9XI36	4.9e-14	68.63	Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Csor.00g104610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575596.1	2.90e-70	100.00	Methyl-CpG-binding domain-containing protein 11, partial [Cucurbita argyrosperma...	[more]
KAG7014138.1	2.91e-24	97.87	Methyl-CpG-binding domain-containing protein 11 [Cucurbita argyrosperma subsp. a...	[more]
XP_023004320.1	2.39e-21	90.20	methyl-CpG-binding domain-containing protein 11-like isoform X5 [Cucurbita maxim...	[more]
XP_023004319.1	2.39e-21	90.20	methyl-CpG-binding domain-containing protein 11-like isoform X4 [Cucurbita maxim...	[more]
XP_023004318.1	2.45e-21	90.20	methyl-CpG-binding domain-containing protein 11-like isoform X3 [Cucurbita maxim...	[more]

BLAST of Csor.00g104610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KVX9	1.16e-21	90.20	methyl-CpG-binding domain-containing protein 11-like isoform X4 OS=Cucurbita max...	[more]
A0A6J1KU91	1.16e-21	90.20	methyl-CpG-binding domain-containing protein 11-like isoform X5 OS=Cucurbita max...	[more]
A0A6J1KZ45	1.19e-21	90.20	methyl-CpG-binding domain-containing protein 11-like isoform X3 OS=Cucurbita max...	[more]
A0A6J1KQ36	1.23e-21	90.20	methyl-CpG-binding domain-containing protein 11-like isoform X2 OS=Cucurbita max...	[more]
A0A6J1KRS8	1.48e-21	90.20	methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita max...	[more]

BLAST of Csor.00g104610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15790.1	1.4e-16	76.47	methyl-CPG-binding domain 11	[more]
AT1G15340.1	3.5e-15	68.63	methyl-CPG-binding domain 10	[more]
AT1G15340.2	7.3e-05	80.00	methyl-CPG-binding domain 10	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 2..39 e-value: 7.1E-6 score: 25.6
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 1..39 score: 9.940513
None	No IPR available	GENE3D	3.30.890.10		coord: 1..68 e-value: 5.1E-6 score: 28.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..108
IPR039622	Methyl-CpG-binding domain-containing protein 10/11	PANTHER	PTHR33729	METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 1..66
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 2..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g104610.m01	Csor.00g104610.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding