Csor.00g103250 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g103250
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Ycf54-like protein
Location	Csor_Chr20: 1523412 .. 1525312 (+)
RNA-Seq Expression	Csor.00g103250
Synteny	Csor.00g103250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCAGTGTGCTGCCGTGAAATCTCTTGCGAGCTCCAAAATTGGTCTCCACAACCACTGCCGAACGTTTTCATTGCCTTTGGGATTGGCTTCTGCTTCTGGTTCCAGCGCTTTCTTCTCGTCTCATCGAGGTTCTTCTCTTTCTTTGCGGTTCAACACAGCAATCGCCGCCGTTAACTCCGATCAAATTGTATCCTCCGATTCGACGGACAAGGTAATCGTTAGCTTCTGAGTTTTTTCCGCATTTCTCTTGCCTTCAATTTCTAAACTCCGACGATGCGCGTTATTGTTCATATCTAGGTATAAATTAATCAATTATCACGGGTTAGATTTTTAAAATTGTTGATATCCATGGAAATCTAGGGAAATTGTATGTATTGTCGATGTCGAGACGTTTACATTAAACCGCGGATTTGATCCGAATTCGTCTTGCTTTATGTCCACCGTGTGTTTGCCCTAGATCGTTCTGGAAATTGGGGATTGTAGTAGCCAAATTCACTGGTTCTATGATCTTTCCAATGCAGGAAGAATCGAACAAGTATTATTTTCTAGTTGCAAATGCGAAGTTCATGCTTGATGAGGAGGAGCATTTCAAAGAACTTCTGTTCGAGCGGCTTCGGAACTATGGCGAGCGTAACAAGGAGCAGGATTTTTGGCTGGTCATTGAGCCTAAGTTCTTGGACAAGTTTCCTAATATCACAAAGAGATTGCAGAGACCTGCCGTCGCTCTTGTTTCAACCAACAGTACCTGGATTACGTAAGCTACCTGTTCTTATTTGCATTCTTGGTTTTTCTTTATGACATTACATAGGTTGAATCATAAAAAAATCCCCTCACAGTGTCATTTGTTTCAAAATACTTGGAATATTGCTCTTACTTTTTCATACACTTTCAAAACTATAGTAGAAATTCTTTAGAACTTTCAAAAGATGCAACATTACCCTTAATCTTTTACAAGTGTTTTGAAACTATCTTTGGAGTAGAAATCGCTTGAATTTCGAATAAGGCTGAGATCTAGAATAGTGTGACGGTGACCTAGGGGTACTTTTCGAACCAAGGTAAACTTCAATAGTATCCTTTTTATATAATTTAGCCTATTAAATAAAGGGTGAGGACTCGACACTTACAACCTTACGAATGTGTGGGGGTGTGTGAGATCCCAAACTGGTTGGAGAGGAGAACAAAACATTCTTTAAGGGTGTTGAAATCTCTCCCTACCAACACGTTTTAAAAACCTTGAAGGGAAGCCGAAAGGGGAAAGCAAAAAATGGACAATATCTATTTGCAGTGGGCTTGAGCCGTTACAAGGTGACTTGTAACTTAGATGTACTTTTCAAATAAATGGCTATTAAATAAAGGGTGAGGACCCGACTCTTACAACCTCACGAATGCGGGCATAACAAATAAGTCCCGTTTACATCACTTGCATTGGTACATTCAGTTGTTGCAGCTCATTGATAATAGGATTCTTCATATGCGTTTCACTGCTGCTTATGTATACACTCGTAGTTTCTATTCAGTGGTGTGCTTAGAGTTACAGTAGGAAAAGGGACATGAAAATGGTTGCAGCCACTGTAAAAGGACCTCAAAACTCGAACATTCTTTCATGTATGCCAACAATGTGTTTGCTTGACTGCGCCATCTTGGTCCCCTTTTCTTGTTGATATGGGCAGGTTCATGAAGCTGAGACTGGACCGAGTTTTGGCCGAAAGTTACGAAGCCAATAGCTTAGAAGAAGCATTGGCTTCTACGCCCACCAACCTCGAGTTTGAGAAGCCTGAAAAGTGGGTGGCTCCCTATTCCAAGTATGAATACGGATGGTGGGAGGCTTTCTTGCCGCCGGTGGCAAAAGCTGAAGCAAAAGTATAA

mRNA sequence

ATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCAGTGTGCTGCCGTGAAATCTCTTGCGAGCTCCAAAATTGGTCTCCACAACCACTGCCGAACGTTTTCATTGCCTTTGGGATTGGCTTCTGCTTCTGGTTCCAGCGCTTTCTTCTCGTCTCATCGAGGTTCTTCTCTTTCTTTGCGGTTCAACACAGCAATCGCCGCCGTTAACTCCGATCAAATTGTATCCTCCGATTCGACGGACAAGGAAGAATCGAACAAGTATTATTTTCTAGTTGCAAATGCGAAGTTCATGCTTGATGAGGAGGAGCATTTCAAAGAACTTCTGTTCGAGCGGCTTCGGAACTATGGCGAGCGTAACAAGGAGCAGGATTTTTGGCTGGTCATTGAGCCTAAGTTCTTGGACAAGTTTCCTAATATCACAAAGAGATTGCAGAGACCTGCCGTCGCTCTTGTTTCAACCAACAGTACCTGGATTACGTTCATGAAGCTGAGACTGGACCGAGTTTTGGCCGAAAGTTACGAAGCCAATAGCTTAGAAGAAGCATTGGCTTCTACGCCCACCAACCTCGAGTTTGAGAAGCCTGAAAAGTGGGTGGCTCCCTATTCCAAGTATGAATACGGATGGTGGGAGGCTTTCTTGCCGCCGGTGGCAAAAGCTGAAGCAAAAGTATAA

Coding sequence (CDS)

ATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCAGTGTGCTGCCGTGAAATCTCTTGCGAGCTCCAAAATTGGTCTCCACAACCACTGCCGAACGTTTTCATTGCCTTTGGGATTGGCTTCTGCTTCTGGTTCCAGCGCTTTCTTCTCGTCTCATCGAGGTTCTTCTCTTTCTTTGCGGTTCAACACAGCAATCGCCGCCGTTAACTCCGATCAAATTGTATCCTCCGATTCGACGGACAAGGAAGAATCGAACAAGTATTATTTTCTAGTTGCAAATGCGAAGTTCATGCTTGATGAGGAGGAGCATTTCAAAGAACTTCTGTTCGAGCGGCTTCGGAACTATGGCGAGCGTAACAAGGAGCAGGATTTTTGGCTGGTCATTGAGCCTAAGTTCTTGGACAAGTTTCCTAATATCACAAAGAGATTGCAGAGACCTGCCGTCGCTCTTGTTTCAACCAACAGTACCTGGATTACGTTCATGAAGCTGAGACTGGACCGAGTTTTGGCCGAAAGTTACGAAGCCAATAGCTTAGAAGAAGCATTGGCTTCTACGCCCACCAACCTCGAGTTTGAGAAGCCTGAAAAGTGGGTGGCTCCCTATTCCAAGTATGAATACGGATGGTGGGAGGCTTTCTTGCCGCCGGTGGCAAAAGCTGAAGCAAAAGTATAA

Protein sequence

MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV

Homology

[Close]

BLAST of Csor.00g103250 vs. ExPASy Swiss-Prot
Match: P72777 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1780 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.2e-15
Identity = 48/102 (47.06%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 88  YYFLVANAKFMLDEEEHFKELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRP 147
           YY+ +A+ KF+L EEE F+E+L ER R+YGE+NKE DFW VI+P FL+       + + P
Sbjct: 31  YYYALASQKFLL-EEEPFEEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAP 90

Query: 148 A--VALVSTNSTWITFMKLRLDRVLAESYEA--NSLEEALAS 186
              VA+VSTN ++I ++KLRL+ VL   +EA  +++ + LAS
Sbjct: 91  EKNVAIVSTNKSFIVWVKLRLEYVLTGEFEAPSDAIPDPLAS 131

[Close]

BLAST of Csor.00g103250 vs. ExPASy Swiss-Prot
Match: P51204 (Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.2e-10
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 88  YYFLVANAKFMLDEEEHFKELLFERLRNYGERNKEQDFWLVIEPKFLD-----KFPNITK 147
           YYF +A+  F+L EE   +E+  ER+  Y   NKE DFWL+  PKFL+     KF N+  
Sbjct: 4   YYFALASQNFLLSEEP-LEEVFRERINYYQSNNKEIDFWLIPNPKFLNKPAMIKFKNL-- 63

Query: 148 RLQRPAVALVSTNSTWITFMKLRLDRVLAESYE 176
            +   A+A++STNS +I ++KLR+  V    +E
Sbjct: 64  -VPNEAIAIISTNSIFINWLKLRIGYVCIGQFE 92

[Close]

BLAST of Csor.00g103250 vs. ExPASy Swiss-Prot
Match: Q1XDT3 (Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-08
Identity = 34/92 (36.96%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 88  YYFLVANAKFMLDEEEHFKELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKR--LQ 147
           YYF +A+  F+L  +E  +E+  ER+  Y   NK  DFWL+  P FL+K   I+ +  + 
Sbjct: 4   YYFALASQNFLL-VQEPLEEVFRERVNYYQSNNKAIDFWLIPNPSFLEKPEMISFKNLVP 63

Query: 148 RPAVALVSTNSTWITFMKLRLDRVLAESYEAN 178
           + AVA++STN  +I ++KLR+  +    +E N
Sbjct: 64  KDAVAIISTNPIFINWLKLRIGYICIGQFEDN 94

[Close]

BLAST of Csor.00g103250 vs. NCBI nr
Match: KAG6570612.1 (putative protein ycf54, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 432 bits (1112), Expect = 1.27e-152
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL 60
           MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL
Sbjct: 1   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL 60

Query: 61  RFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN 120
           RFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN
Sbjct: 61  RFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN 120

Query: 121 KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE 180
           KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE
Sbjct: 121 KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE 180

Query: 181 EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 224
           EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV
Sbjct: 181 EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 224

[Close]

BLAST of Csor.00g103250 vs. NCBI nr
Match: KAG7010462.1 (putative protein ycf54 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 431 bits (1108), Expect = 6.89e-152
Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL 60
           MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL
Sbjct: 9   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL 68

Query: 61  RFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN 120
           RFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN
Sbjct: 69  RFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN 128

Query: 121 KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE 180
           KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE
Sbjct: 129 KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE 188

Query: 181 EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 224
           EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAK EAKV
Sbjct: 189 EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV 232

[Close]

BLAST of Csor.00g103250 vs. NCBI nr
Match: XP_022944632.1 (uncharacterized protein LOC111449035 [Cucurbita moschata] >XP_023512536.1 uncharacterized protein LOC111777251 [Cucurbita pepo subsp. pepo] >XP_023512537.1 uncharacterized protein LOC111777251 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 431 bits (1107), Expect = 9.79e-152
Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL 60
           MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL
Sbjct: 9   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL 68

Query: 61  RFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN 120
           RFNTAIAAVNSDQIVSSDS DKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN
Sbjct: 69  RFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN 128

Query: 121 KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE 180
           KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE
Sbjct: 129 KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE 188

Query: 181 EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 224
           EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV
Sbjct: 189 EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 232

[Close]

BLAST of Csor.00g103250 vs. NCBI nr
Match: XP_022986936.1 (uncharacterized protein LOC111484525 [Cucurbita maxima])

HSP 1 Score: 420 bits (1079), Expect = 1.88e-147
Identity = 219/225 (97.33%), Postives = 221/225 (98.22%), Query Frame = 0


Query: 1   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLS- 60
           MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSS+FF SHRGSSLS 
Sbjct: 9   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSSFFLSHRGSSLSF 68

Query: 61  LRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGER 120
           LRF TA+AAVNSDQIVSSDS DKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGER
Sbjct: 69  LRFKTAVAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGER 128

Query: 121 NKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSL 180
           NKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSL
Sbjct: 129 NKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSL 188

Query: 181 EEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 224
           EEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV
Sbjct: 189 EEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 233

[Close]

BLAST of Csor.00g103250 vs. NCBI nr
Match: XP_038900405.1 (uncharacterized protein LOC120087636 [Benincasa hispida])

HSP 1 Score: 373 bits (957), Expect = 5.72e-129
Identity = 197/224 (87.95%), Postives = 203/224 (90.62%), Query Frame = 0


Query: 1   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL 60
           MGSSSAAMATPT C AVKSLASS+IG H+HCRT SLPLGL S+S SS+ F S  GSSLS 
Sbjct: 9   MGSSSAAMATPTHCTAVKSLASSRIGYHSHCRTISLPLGLPSSSISSSCFLSPPGSSLSS 68

Query: 61  RFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN 120
            FNT IAAVN      SDS DK+ESNKYYF+VANAKFMLDEEEHFKELLFERLRNYGERN
Sbjct: 69  PFNTEIAAVN------SDSADKQESNKYYFVVANAKFMLDEEEHFKELLFERLRNYGERN 128

Query: 121 KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE 180
           KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE
Sbjct: 129 KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE 188

Query: 181 EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 224
           EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV KAEAKV
Sbjct: 189 EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 226

[Close]

BLAST of Csor.00g103250 vs. ExPASy TrEMBL
Match: A0A6J1FW50 (uncharacterized protein LOC111449035 OS=Cucurbita moschata OX=3662 GN=LOC111449035 PE=4 SV=1)

HSP 1 Score: 431 bits (1107), Expect = 4.74e-152
Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL 60
           MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL
Sbjct: 9   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL 68

Query: 61  RFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN 120
           RFNTAIAAVNSDQIVSSDS DKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN
Sbjct: 69  RFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN 128

Query: 121 KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE 180
           KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE
Sbjct: 129 KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE 188

Query: 181 EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 224
           EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV
Sbjct: 189 EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 232

[Close]

BLAST of Csor.00g103250 vs. ExPASy TrEMBL
Match: A0A6J1JCP0 (uncharacterized protein LOC111484525 OS=Cucurbita maxima OX=3661 GN=LOC111484525 PE=4 SV=1)

HSP 1 Score: 420 bits (1079), Expect = 9.11e-148
Identity = 219/225 (97.33%), Postives = 221/225 (98.22%), Query Frame = 0


Query: 1   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLS- 60
           MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSS+FF SHRGSSLS 
Sbjct: 9   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSSFFLSHRGSSLSF 68

Query: 61  LRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGER 120
           LRF TA+AAVNSDQIVSSDS DKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGER
Sbjct: 69  LRFKTAVAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGER 128

Query: 121 NKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSL 180
           NKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSL
Sbjct: 129 NKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSL 188

Query: 181 EEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 224
           EEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV
Sbjct: 189 EEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 233

[Close]

BLAST of Csor.00g103250 vs. ExPASy TrEMBL
Match: A0A6J1D8T3 (uncharacterized protein LOC111017973 OS=Momordica charantia OX=3673 GN=LOC111017973 PE=4 SV=1)

HSP 1 Score: 362 bits (929), Expect = 6.31e-125
Identity = 187/224 (83.48%), Postives = 200/224 (89.29%), Query Frame = 0


Query: 1   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL 60
           MGSSSAAM TP Q AAVKSLAS++   H HCRT SLPLG A+ASGS++ F   RGSS S 
Sbjct: 9   MGSSSAAMVTPAQFAAVKSLASARASHHTHCRTLSLPLGFANASGSTSCFLPSRGSSPSS 68

Query: 61  RFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN 120
            F+TAIAAVNS+Q+VSSD  DK+E+NKYYFLVANAKFMLDEEEHFKELLFERLR YGERN
Sbjct: 69  PFSTAIAAVNSNQLVSSDPADKQEANKYYFLVANAKFMLDEEEHFKELLFERLRYYGERN 128

Query: 121 KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE 180
           KEQDFWLVIEPKFL+KFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANS E
Sbjct: 129 KEQDFWLVIEPKFLEKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSFE 188

Query: 181 EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 224
           EA+AS PTN+EFEKPEKWVAPY KYEYGWWE FLPPV KAEAKV
Sbjct: 189 EAMASNPTNIEFEKPEKWVAPYPKYEYGWWETFLPPVTKAEAKV 232

[Close]

BLAST of Csor.00g103250 vs. ExPASy TrEMBL
Match: A0A6J1G6K2 (uncharacterized protein LOC111451246 OS=Cucurbita moschata OX=3662 GN=LOC111451246 PE=4 SV=1)

HSP 1 Score: 343 bits (881), Expect = 1.20e-117
Identity = 181/223 (81.17%), Postives = 197/223 (88.34%), Query Frame = 0


Query: 1   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL 60
           MGSSSAAM T TQC A+KSLAS +IG H+HCR  SLP GL SASG S+ F + RGSS   
Sbjct: 9   MGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFASRGSS--- 68

Query: 61  RFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN 120
            FNTAIAAVN DQIVSSDS D++ESNKYYF+VANAKFMLDEEEHF+ELLFERLR Y ER+
Sbjct: 69  PFNTAIAAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYYAERS 128

Query: 121 KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE 180
           KEQDFWLVIEPKFL++FPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA+SLE
Sbjct: 129 KEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADSLE 188

Query: 181 EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAK 223
           +ALAS PTN+EFEKPEKWVAPY KYEYGWWE FLPPV K EA+
Sbjct: 189 QALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAE 227

[Close]

BLAST of Csor.00g103250 vs. ExPASy TrEMBL
Match: A0A5A7SVU2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00710 PE=4 SV=1)

HSP 1 Score: 336 bits (861), Expect = 1.16e-114
Identity = 186/224 (83.04%), Postives = 193/224 (86.16%), Query Frame = 0


Query: 1   MGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSL 60
           MGSSSAA+AT T  AAVKSL +S IG HN   T SLPL L S S  S+ F S   SSLS 
Sbjct: 9   MGSSSAAVATSTHFAAVKSLPTSGIGHHNRFPTPSLPLLLPSTSIFSSCFLSSPLSSLSS 68

Query: 61  RFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN 120
            FNTAIAAVN      SDS DK+ES KYYFLVANAKFMLDEEEHFKELLFERLRNYGERN
Sbjct: 69  PFNTAIAAVN------SDSADKQESIKYYFLVANAKFMLDEEEHFKELLFERLRNYGERN 128

Query: 121 KEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLE 180
           KEQDFWLVIEPKFLDKFPNITKRL+RPAVALVST+STWITFMKLRLDRVLAESYEANS+E
Sbjct: 129 KEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAESYEANSIE 188

Query: 181 EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 224
           EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV KAEAKV
Sbjct: 189 EALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 226

[Close]

BLAST of Csor.00g103250 vs. TAIR 10
Match: AT5G58250.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 221.9 bits (564), Expect = 5.3e-58
Identity = 118/180 (65.56%), Postives = 135/180 (75.00%), Query Frame = 0


Query: 43  ASGSSAFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEE 102
           +S S +  SSH  SS    F TA  ++         S +K ES KY+FLVANAKFMLDEE
Sbjct: 40  SSPSLSLPSSHFSSS----FKTAATSIE-----QQSSVNKGESTKYHFLVANAKFMLDEE 99

Query: 103 EHFKELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFM 162
           EHF+E LFERLR +GER   QDFWLVIEPKFLD FP IT+RL+RPAVALVSTN TWITFM
Sbjct: 100 EHFQEQLFERLRYFGERELVQDFWLVIEPKFLDNFPKITQRLRRPAVALVSTNGTWITFM 159

Query: 163 KLRLDRVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEA 222
           KLRLDRVL +S+EA SL+EALAS PT LEF+KP+ WVAPY KYE GWW+ FLP V +  A
Sbjct: 160 KLRLDRVLYDSFEATSLDEALASNPTTLEFDKPKNWVAPYPKYEPGWWDTFLPKVTQESA 210

The following BLAST results are available for this feature:

BLAST of Csor.00g103250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P72777	9.2e-15	47.06	Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
P51204	5.2e-10	40.86	Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1	[more]
Q1XDT3	2.2e-08	36.96	Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1	[more]

BLAST of Csor.00g103250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570612.1	1.27e-152	100.00	putative protein ycf54, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7010462.1	6.89e-152	99.55	putative protein ycf54 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022944632.1	9.79e-152	99.55	uncharacterized protein LOC111449035 [Cucurbita moschata] >XP_023512536.1 unchar...	[more]
XP_022986936.1	1.88e-147	97.33	uncharacterized protein LOC111484525 [Cucurbita maxima]	[more]
XP_038900405.1	5.72e-129	87.95	uncharacterized protein LOC120087636 [Benincasa hispida]	[more]

BLAST of Csor.00g103250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FW50	4.74e-152	99.55	uncharacterized protein LOC111449035 OS=Cucurbita moschata OX=3662 GN=LOC1114490...	[more]
A0A6J1JCP0	9.11e-148	97.33	uncharacterized protein LOC111484525 OS=Cucurbita maxima OX=3661 GN=LOC111484525...	[more]
A0A6J1D8T3	6.31e-125	83.48	uncharacterized protein LOC111017973 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1G6K2	1.20e-117	81.17	uncharacterized protein LOC111451246 OS=Cucurbita moschata OX=3662 GN=LOC1114512...	[more]
A0A5A7SVU2	1.16e-114	83.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Csor.00g103250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58250.1	5.3e-58	65.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019616	Ycf54 protein	PFAM	PF10674	Ycf54	coord: 87..176 e-value: 3.7E-35 score: 120.1
IPR019616	Ycf54 protein	PANTHER	PTHR35319	FAMILY NOT NAMED	coord: 28..220
IPR038409	Ycf54-like superfamily	GENE3D	3.30.70.1860	Uncharacterised protein family Ycf54	coord: 85..197 e-value: 1.5E-38 score: 133.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g103250.m01	Csor.00g103250.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015995	chlorophyll biosynthetic process
molecular_function	GO:0048529	magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity